plant genome

Summary

Summary: The genetic complement of a plant (PLANTS) as represented in its DNA.

Top Publications

  1. ncbi The Sorghum bicolor genome and the diversification of grasses
    Andrew H Paterson
    Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA
    Nature 457:551-6. 2009
  2. ncbi MicroRNAS and their regulatory roles in plants
    Matthew W Jones-Rhoades
    Whitehead Institute for Biomedical Research, Department of Biology, Massachusetts Institute of Technology, and Howard Hughes Medical Institute, Cambridge, Massachusetts 02142, USA
    Annu Rev Plant Biol 57:19-53. 2006
  3. ncbi MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    Oliver Thimm
    Max Planck Institute for Molecular Plant Physiology, Golm, Germany
    Plant J 37:914-39. 2004
  4. ncbi The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    Olivier Jaillon
    Genoscope CEA and UMR 8030 CNRS Genoscope Université d Evry, 2 rue Gaston Cremieux, BP5706, 91057 Evry, France
    Nature 449:463-7. 2007
  5. ncbi Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    T Thiel
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Theor Appl Genet 106:411-22. 2003
  6. pmc The TIGR Rice Genome Annotation Resource: improvements and new features
    Shu Ouyang
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Nucleic Acids Res 35:D883-7. 2007
  7. pmc Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    Ramanjulu Sunkar
    Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, California 92521, USA
    Plant Cell 16:2001-19. 2004
  8. pmc PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
    Magali Lescot
    Vakgroep Moleculaire Genetica, Departement Plantengenetica, Vlaams Interuniversitair Instituut voor Biotechnologie, Universiteit Gent, K L Ledeganckstraat 35, B 9000 Gent, Belgium
    Nucleic Acids Res 30:325-7. 2002
  9. ncbi Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
    Xiaoyu Zhang
    Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095, USA
    Cell 126:1189-201. 2006
  10. ncbi The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    G A Tuskan
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    Science 313:1596-604. 2006

Research Grants

Detail Information

Publications283 found, 100 shown here

  1. ncbi The Sorghum bicolor genome and the diversification of grasses
    Andrew H Paterson
    Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA
    Nature 457:551-6. 2009
    ..About 24% of genes are grass-specific and 7% are sorghum-specific. Recent gene and microRNA duplications may contribute to sorghum's drought tolerance...
  2. ncbi MicroRNAS and their regulatory roles in plants
    Matthew W Jones-Rhoades
    Whitehead Institute for Biomedical Research, Department of Biology, Massachusetts Institute of Technology, and Howard Hughes Medical Institute, Cambridge, Massachusetts 02142, USA
    Annu Rev Plant Biol 57:19-53. 2006
    ....
  3. ncbi MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    Oliver Thimm
    Max Planck Institute for Molecular Plant Physiology, Golm, Germany
    Plant J 37:914-39. 2004
    ....
  4. ncbi The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    Olivier Jaillon
    Genoscope CEA and UMR 8030 CNRS Genoscope Université d Evry, 2 rue Gaston Cremieux, BP5706, 91057 Evry, France
    Nature 449:463-7. 2007
    ..Furthermore, we explain the chronology of previously described whole-genome duplication events in the evolution of flowering plants...
  5. ncbi Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    T Thiel
    Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, D 06466 Gatersleben, Germany
    Theor Appl Genet 106:411-22. 2003
    ....
  6. pmc The TIGR Rice Genome Annotation Resource: improvements and new features
    Shu Ouyang
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Nucleic Acids Res 35:D883-7. 2007
    ..Enhanced data access is available through web interfaces, FTP downloads and a Data Extractor tool developed in order to support discrete dataset downloads...
  7. pmc Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    Ramanjulu Sunkar
    Institute for Integrative Genome Biology and Department of Botany and Plant Sciences, University of California, Riverside, California 92521, USA
    Plant Cell 16:2001-19. 2004
    ....
  8. pmc PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
    Magali Lescot
    Vakgroep Moleculaire Genetica, Departement Plantengenetica, Vlaams Interuniversitair Instituut voor Biotechnologie, Universiteit Gent, K L Ledeganckstraat 35, B 9000 Gent, Belgium
    Nucleic Acids Res 30:325-7. 2002
    ..New regulatory elements can be sent automatically and will be added to the database after curation. The PlantCARE relational database is available via the World Wide Web at http://sphinx.rug.ac.be:8080/PlantCARE/...
  9. ncbi Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
    Xiaoyu Zhang
    Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095, USA
    Cell 126:1189-201. 2006
    ....
  10. ncbi The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    G A Tuskan
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    Science 313:1596-604. 2006
    ..Overrepresented exceptions in Populus include genes associated with lignocellulosic wall biosynthesis, meristem development, disease resistance, and metabolite transport...
  11. ncbi The B73 maize genome: complexity, diversity, and dynamics
    Patrick S Schnable
    Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA
    Science 326:1112-5. 2009
    ..These analyses inform and set the stage for further investigations to improve our understanding of the domestication and agricultural improvements of maize...
  12. pmc The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana
    Steven B Cannon
    Plant Biology Department, University of Minnesota, St, Paul, MN 55108, USA
    BMC Plant Biol 4:10. 2004
    ....
  13. pmc Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
    Brian J Haas
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Nucleic Acids Res 31:5654-66. 2003
    ..The algorithm of the Program to Assemble Spliced Alignments (PASA) tool is described, as well as the results of automated updates to Arabidopsis gene annotations...
  14. pmc The Arabidopsis Information Resource (TAIR): gene structure and function annotation
    David Swarbreck
    Carnegie Institution, Department of Plant Biology, 260 Panama St, Stanford, CA 94305, USA
    Nucleic Acids Res 36:D1009-14. 2008
    ..A total of 681 new genes and 1002 new splice variants were added. Overall, 10,098 loci (one-third of all loci from the previous TAIR6 release) were updated for the TAIR7 release...
  15. ncbi Synteny and collinearity in plant genomes
    Haibao Tang
    Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA
    Science 320:486-8. 2008
    ..Because of variability in DNA substitution rates among taxa and genes, deviation from collinearity might be a more reliable phylogenetic character...
  16. ncbi Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    Daniel Zilberman
    Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA
    Nat Genet 39:61-9. 2007
    ..Our results indicate that genic transcription and DNA methylation are closely interwoven processes...
  17. ncbi Genome-wide insertional mutagenesis of Arabidopsis thaliana
    Jose M Alonso
    Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA
    Science 301:653-7. 2003
    ..Insertion mutations were identified in genes that are regulated in response to the plant hormone ethylene...
  18. pmc Sequencing of natural strains of Arabidopsis thaliana with short reads
    Stephan Ossowski
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Tubingen, Germany
    Genome Res 18:2024-33. 2008
    ..Our pipeline for aligning reads and predicting SNPs and indels, SHORE, is available for download at http://1001genomes.org...
  19. pmc Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
    Haibao Tang
    Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA
    Genome Res 18:1944-54. 2008
    ..Comparative analysis of inferred homologous genes derived from this model shows patterns of preferential gene retention or loss after polyploidy and reveals large variability of nucleotide substitution rates among plant nuclear genomes...
  20. pmc Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    Ryan Lister
    Plant Biology Laboratory, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA
    Cell 133:523-36. 2008
    ..Finally, strand-specific mRNA-seq revealed altered transcript abundance of hundreds of genes, transposons, and unannotated intergenic transcripts upon modification of the DNA methylation state...
  21. pmc F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
    Mukesh Jain
    Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110 021, India
    Plant Physiol 143:1467-83. 2007
    ..The structure and function of F-box proteins in plants is discussed in light of these results and the published information. These data will be useful for prioritization of F-box proteins for functional validation in rice...
  22. pmc Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Shawn J Cokus
    Department of Molecular, Cell, and Developmental Biology, University of California at Los Angeles, Los Angeles, California 90095, USA
    Nature 452:215-9. 2008
    ....
  23. pmc Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses
    Bjorn Usadel
    Max Planck Institute of Molecular Plant Physiology, 14476 Golm, Germany
    Plant Physiol 138:1195-204. 2005
    ....
  24. pmc Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
    Blake C Meyers
    Department of Vegetable Crops, University of California, Davis, California 95616, USA
    Plant Cell 15:809-34. 2003
    ..The observed diversity of these NBS-LRR proteins indicates the variety of recognition molecules available in an individual genotype to detect diverse biotic challenges...
  25. pmc Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
    Claire Lurin
    Unite de Recherche en Genomique Vegetale, Institut National de la Recherche Agronomique Centre National de la Recherche Scientifique Université d Evry Val d Essone, CP 5708, 91057 Evry Cedex, France
    Plant Cell 16:2089-103. 2004
    ..These results confirm, but massively extend, the very sparse observations previously obtained from detailed characterization of individual mutants in other organisms...
  26. pmc High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
    Gyorgy Szittya
    School of Biological Sciences, University of East Anglia, Norwich, UK
    BMC Genomics 9:593. 2008
    ..High-throughput sequencing technology is capable to identify novel short RNAs in plant species. We used Solexa sequencing to find new microRNAs in one of the model legume species, barrel medic (Medicago truncatula)...
  27. pmc Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
    Isobel A P Parkin
    Department of Agronomy, University of Wisconsin, Madison, 53706, USA
    Genetics 171:765-81. 2005
    ..The comparative map assists in exploiting the Arabidopsis genomic sequence for marker and candidate gene identification within the larger, intractable genomes of the Brassica polyploids...
  28. pmc Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    Tomasz Czechowski
    Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
    Plant Physiol 139:5-17. 2005
    ..The developed PCR primers or hybridization probes for the novel reference genes will enable better normalization and quantification of transcript levels in Arabidopsis in the future...
  29. pmc Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome
    Akio Miyao
    Molecular Genetics Department, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305 8602, Japan
    Plant Cell 15:1771-80. 2003
    ..The nucleotide sequence data were uploaded to the DDBJ, EMBL, and GenBank nucleotide sequence databases under accession numbers AG020727 to AG025611 and AG205093 to AG215049...
  30. pmc A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    Qian Hao Zhu
    CSIRO Plant Industry, Canberra, ACT 2601, Australia
    Genome Res 18:1456-65. 2008
    ..Comparison of the population of miRNAs and miRNA-like siRNAs in grains to those in other parts of the rice plant reveals that many are expressed in an organ-specific manner...
  31. pmc Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    William Martin
    Institut fur Botanik, Heinrich Heine Universitat, Universitatsstrasse 1, 40225 Dusseldorf, Germany
    Proc Natl Acad Sci U S A 99:12246-51. 2002
    ....
  32. pmc Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    Simon Moxon
    School of Computing, University of East Anglia, Norwich NR4 7TJ, United Kingdom
    Genome Res 18:1602-9. 2008
    ..This study opens a new avenue in the field of fleshy fruit biology by raising the possibility that fruit development and ripening may be under miRNA regulation...
  33. ncbi The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes
    M Eric Schranz
    Department of Biology, Duke University, Durham, NC 27708, USA
    Trends Plant Sci 11:535-42. 2006
    ..thaliana, Arabidopsis lyrata, Capsella rubella and Brassica rapa. A framework for comparison between species is timely because several crucifer genome-sequencing projects are underway...
  34. ncbi Mutation pressure and the evolution of organelle genomic architecture
    Michael Lynch
    Department of Biology, Indiana University, Bloomington, IN 47405, USA
    Science 311:1727-30. 2006
    ..These observations provide support for the hypothesis that the fundamental features of genome evolution are largely defined by the relative power of two nonadaptive forces: random genetic drift and mutation pressure...
  35. pmc Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
    Robert T Gaeta
    Department of Agronomy, University of Wisconsin, Madison, Wisconsin, USA
    Plant Cell 19:3403-17. 2007
    ..Our data indicate that exchanges among homoeologous chromosomes are a major mechanism creating novel allele combinations and phenotypic variation in newly formed B. napus polyploids...
  36. ncbi The advantages and disadvantages of being polyploid
    Luca Comai
    Department of Biology, Box 355325, University of Washington, Seattle, Washington 98195, USA
    Nat Rev Genet 6:836-46. 2005
    ..These interactions can be related to the phenotypes and evolutionary fates of polyploids. Here, I consider the advantages and challenges of polyploidy, and its evolutionary potential...
  37. ncbi The effects of artificial selection on the maize genome
    Stephen I Wright
    Department of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697, USA
    Science 308:1310-4. 2005
    ..If we assume that our sample of genes is representative, approximately 1200 genes throughout the maize genome have been affected by artificial selection...
  38. pmc The Rice Annotation Project Database (RAP-DB): 2008 update
    Tsuyoshi Tanaka
    National Institute of Agrobiological Sciences, Ibaraki 305 8602, Japan
    Nucleic Acids Res 36:D1028-33. 2008
    ..We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/...
  39. ncbi A physical map of the 1-gigabase bread wheat chromosome 3B
    Etienne Paux
    Institut National de la Recherche Agronomique, Université Blaise Pascal INRA UBP, UMR 1095, Genetics Diversity and Ecophysiology of Cereals, Clermont Ferrand, France
    Science 322:101-4. 2008
    ..This physical map establishes a template for the remaining wheat chromosomes and demonstrates the feasibility of constructing physical maps in large, complex, polyploid genomes with a chromosome-based approach...
  40. pmc Diversity Arrays Technology (DArT) for whole-genome profiling of barley
    Peter Wenzl
    Center for the Application of Molecular Biology to International Agriculture, G P O Box 3200, Canberra, ACT 2601, Australia
    Proc Natl Acad Sci U S A 101:9915-20. 2004
    ..These results highlight the potential of DArT as a generic technique for genome profiling in the context of molecular breeding and genomics...
  41. pmc Genetic design and statistical power of nested association mapping in maize
    Jianming Yu
    Institute for Genomic Diversity, Cornell University, Ithaca, New York 14853 2703, USA
    Genetics 178:539-51. 2008
    ..By integrating genetic design, natural diversity, and genomics technologies, this new complex trait dissection strategy should greatly facilitate endeavors to link molecular variation with phenotypic variation for various complex traits...
  42. pmc A microsatellite map of wheat
    M S Roder
    Institut für Pflanzengenetik und Kulturpflanzenforschung IPK, 06466 Gatersleben, Germany
    Genetics 149:2007-23. 1998
    ..Ninety-three loci were mapped to the A genome, 115 to the B genome, and 71 to the D genome. The markers are randomly distributed along the linkage map, with clustering in several centromeric regions...
  43. ncbi The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
    Stefan A Rensing
    Plant Biotechnology, Faculty of Biology, University of Freiburg, Schaenzlestrasse 1, D 79104 Freiburg, Germany
    Science 319:64-9. 2008
    ..The Physcomitrella genome provides a resource for phylogenetic inferences about gene function and for experimental analysis of plant processes through this plant's unique facility for reverse genetics...
  44. pmc Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes
    Priya Panjabi
    Centre for Genetic Manipulation of Crop Plants, University of Delhi South Campus, Benito Juarez Road, New Delhi 110021, India
    BMC Genomics 9:113. 2008
    ..thaliana and analyzed the arrangement of 24 (previously described) genomic block segments in the A, B and C Brassica genomes to study the evolutionary events contributing to karyotype variations in the three diploid Brassica genomes...
  45. pmc Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula
    Carine Ameline-Torregrosa
    Laboratoire des Interactions Plantes Microorganismes, UMR CNRS INRA 442 2594, 31326, Castanet Tolosan, France
    Plant Physiol 146:5-21. 2008
    ..This analysis shows the gene family not only is important functionally and agronomically, but also plays a structural role in the genome...
  46. ncbi Epigenetic regulation of transposable elements in plants
    Damon Lisch
    Department of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA
    Annu Rev Plant Biol 60:43-66. 2009
    ..Together, these observations suggest that naturally occurring changes in transposon activity may have had an important impact on the causes and consequences of epigenetic silencing in plants...
  47. pmc Gene finding in novel genomes
    Ian Korf
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK
    BMC Bioinformatics 5:59. 2004
    ..Computational gene prediction continues to be an important problem, especially for genomes with little experimental data...
  48. ncbi The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants
    Timothy W Chumley
    The University of Texas at Austin, TX, USA
    Mol Biol Evol 23:2175-90. 2006
    ..We propose simple models that account for the major rearrangements with a minimum of 8 IR boundary changes and 12 inversions in addition to several insertions of duplicated sequence...
  49. ncbi Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes
    J L Riechmann
    Mendel Biotechnology, 21375 Cabot Boulevard, Hayward, CA 94545, USA
    Science 290:2105-10. 2000
    ..The genome-wide comparison reveals the evolutionary generation of diversity in the regulation of transcription...
  50. pmc A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions
    L Fishman
    Department of Biology, Duke University, Durham, North Carolina 27708, USA
    Genetics 159:1701-16. 2001
    ..We discuss possible causes of the unequal representation of parental genomes in the F(2) generation...
  51. ncbi A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
    Stephen A Goff
    Torrey Mesa Research Institute, Syngenta, 3115 Merryfield Row, San Diego, CA 92121, USA
    Science 296:92-100. 2002
    ..Assignment of candidate rice orthologs to Arabidopsis genes is possible in many cases. The rice genome sequence provides a foundation for the improvement of cereals, our most important crops...
  52. pmc Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray
    Teruaki Taji
    Laboratory of Plant Molecular Biology, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305 0074, Japan
    Plant Physiol 135:1697-709. 2004
    ..Stress tolerance of salt cress may be due to constitutive overexpression of many genes that function in stress tolerance and that are stress inducible in Arabidopsis...
  53. ncbi Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
    John E Bowers
    Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA
    Nature 422:433-8. 2003
    ....
  54. ncbi The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
    Hideki Goda
    RIKEN Plant Science Center, Tsurumi, Yokohama, Kanagawa 230 0045, Japan
    Plant J 55:526-42. 2008
    ..The data set presented here will be a versatile resource for future hormone studies, and constitutes a reference for genome-wide gene expression in Arabidopsis...
  55. ncbi A comparative linkage map of oilseed rape and its use for QTL analysis of seed oil and erucic acid content
    D Qiu
    National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 1 Shizishan, 430070, Wuhan, China
    Theor Appl Genet 114:67-80. 2006
    ..The results provide new insights into the genetic control of seed oil and erucic acid content in oilseed rape, and demonstrate the utility of the linkage map and population...
  56. ncbi Genome-wide analyses of alternative splicing in plants: opportunities and challenges
    W Brad Barbazuk
    Donald Danforth Plant Science Center, St Louis, Missouri 63132, USA
    Genome Res 18:1381-92. 2008
    ..However, recently available plant genome and transcript sequence data sets are enabling a global analysis of AS in many plant species...
  57. pmc Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    Guillaume Blanc
    Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, 2, Ireland
    Plant Cell 16:1667-78. 2004
    ..However, the unusual age profile of tandem gene duplications in Arabidopsis indicates that other scenarios, such as variation in the rate at which duplicated genes are deleted, must also be considered...
  58. ncbi Recombination and linkage disequilibrium in Arabidopsis thaliana
    Sung Kim
    Molecular and Computational Biology, University of Southern California, Los Angeles, California 90089, USA
    Nat Genet 39:1151-5. 2007
    ..LD also reflects the action of selection, and it is more extensive between nonsynonymous polymorphisms than between synonymous polymorphisms...
  59. ncbi The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    Joachim Kilian
    Zentrum für Molekularbiologie der Pflanzen, Pflanzenphysiologie, Universitat Tubingen, Auf der Morgenstelle 1, 72076 Tubingen, Germany
    Plant J 50:347-63. 2007
    ..In summary, the information reported provides a prime reference point and source for the subsequent exploitation of this important resource for research into plant abiotic stress...
  60. pmc Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
    Jeffrey A Fawcett
    Department of Plant Systems Biology, Flanders Institute for Biotechnology, 9052 Gent, Belgium
    Proc Natl Acad Sci U S A 106:5737-42. 2009
    ....
  61. ncbi Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance gene
    Dario Leister
    Abteilung für Pflanzezüchtung und Ertragsphysiologie, Max Planck Instutut für Züchtungsforschung, Koln, Germany
    Trends Genet 20:116-22. 2004
    ..Once physically removed from their closest relatives, the NBS-LRR genes might adopt and preserve new specificities because they are less prone to sequence homogenization...
  62. pmc The deepest divergences in land plants inferred from phylogenomic evidence
    Yin Long Qiu
    Department of Ecology and Evolutionary Biology, University Herbarium, University of Michigan, Ann Arbor, MI 48109 1048, USA
    Proc Natl Acad Sci U S A 103:15511-6. 2006
    ..In particular, it is shown here that densely sampled taxon trees built with multiple genes provide an indispensable test of taxon-sparse trees inferred from genome sequences...
  63. pmc Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
    Z Jeffrey Chen
    Department of Molecular Cell and Developmental Biology and Institute for Cellular and Molecular Biology, University of Texas, Austin, TX 78712, USA
    Annu Rev Plant Biol 58:377-406. 2007
    ....
  64. pmc Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis
    Shin Han Shiu
    Department of Ecology and Evolution, University of Chicago, Illinois 60637, USA
    Plant Physiol 132:530-43. 2003
    ..Therefore, tandem duplications and segmental/whole-genome duplications represent two of the major mechanisms for the expansion of the RLK/Pelle family in Arabidopsis...
  65. ncbi Understanding mechanisms of novel gene expression in polyploids
    Thomas C Osborn
    Dept of Agronomy, University of Wisconsin, Madison, WI 53706, USA
    Trends Genet 19:141-7. 2003
    ..New research approaches are being used to study these mechanisms and the results should provide a more complete understanding of polyploidy...
  66. pmc Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map
    Hans van Os
    Laboratory of Plant Breeding, Wageningen University, The Netherlands
    Genetics 173:1075-87. 2006
    ..potatogenome.net)...
  67. ncbi Ancient signals: comparative genomics of plant MAPK and MAPKK gene families
    Louis Philippe Hamel
    Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, 1055 du PEPS, Sainte Foy, Quebec, Canada G1V 4C7
    Trends Plant Sci 11:192-8. 2006
    ..The Arabidopsis MAPK nomenclature appears sufficiently robust to allow it to be usefully extended to other well-characterized plant systems...
  68. pmc Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
    Jianlin Wang
    Department of Agronomy, University of Wisconsin, Madison, Wisconsin 53706, USA
    Genetics 172:507-17. 2006
    ....
  69. ncbi Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    Shu Miaw Chaw
    Institute of Botany, Academia Sinica, 128 Sec 2 Academy Road, Taipei 115, Taiwan
    J Mol Evol 58:424-41. 2004
    ..These estimates indicate that both the monocot-dicot divergence and the core eudicot's age are older than their respective fossil records...
  70. pmc Plant NBS-LRR proteins: adaptable guards
    Leah McHale
    The Genome Center, University of California, Davis, CA 95616, USA
    Genome Biol 7:212. 2006
    ..Their precise role in recognition is unknown; however, they are thought to monitor the status of plant proteins that are targeted by pathogen effectors...
  71. pmc PlantGDB: a resource for comparative plant genomics
    Jon Duvick
    Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA
    Nucleic Acids Res 36:D959-65. 2008
    ..PlantGDB also hosts a plant genomics research outreach portal (PGROP) that facilitates access to a large number of resources for research and training...
  72. ncbi An active DNA transposon family in rice
    Ning Jiang
    Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA
    Nature 421:163-7. 2003
    ..Since the domestication of rice mPing MITEs have been amplified preferentially in cultivars adapted to environmental extremes-a situation that is reminiscent of the genomic shock theory for transposon activation...
  73. pmc A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa
    Hong Kyu Choi
    Department of Plant Pathology, University of California, Davis, California 95616, USA
    Genetics 166:1463-502. 2004
    ..sativa. The resulting comparative map, which includes 68 bridging markers, indicates that the two Medicago genomes are highly similar and establishes the basis for a Medicago composite map...
  74. ncbi Yesterday's polyploids and the mystery of diploidization
    K H Wolfe
    Department of Genetics, Smurfit Institute, Trinity College, University of Dublin, Dublin 2, Republic of Ireland
    Nat Rev Genet 2:333-41. 2001
    ..The greatest mystery is the molecular basis of diploidization, the evolutionary process by which a polyploid genome turns into a diploid one...
  75. ncbi Bursts of retrotransposition reproduced in Arabidopsis
    Sayuri Tsukahara
    Department of Integrated Genetics, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411 8540, Japan
    Nature 461:423-6. 2009
    ....
  76. ncbi Association genetics of complex traits in conifers
    David B Neale
    Institute of Forest Genetics, USDA Forest Service and Department of Environmental Horticulture, University of California, Davis, CA, USA
    Trends Plant Sci 9:325-30. 2004
    ..Allele discovery using association approaches should lead to more-efficient methods of marker-assisted breeding and a deeper understanding of genetic adaptation in forest trees...
  77. pmc Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli
    Kousuke Hanada
    Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA
    Plant Physiol 148:993-1003. 2008
    ....
  78. pmc Core genome responses involved in acclimation to high temperature
    Jane Larkindale
    Department of Biochemistry and Molecular Biophysics, University of Arizona, Tucson, Arizona 85721, USA
    Plant Physiol 146:748-61. 2008
    ....
  79. ncbi Genomic plasticity and the diversity of polyploid plants
    A R Leitch
    School of Biological and Chemical Sciences, Queen Mary, University of London, London E1 4NS, UK
    Science 320:481-3. 2008
    ..This process has been a major driving force behind the divergence of the angiosperms and their biodiversity...
  80. ncbi Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.)
    Pierre Sourdille
    UMR INRA UBP Amélioration et Santé des Plantes, 234, avenue du Brézet, 63039 Clermont Ferrand, France
    Funct Integr Genomics 4:12-25. 2004
    ....
  81. ncbi A role for RNAi in the selective correction of DNA methylation defects
    Felipe Karam Teixeira
    Unite de Recherche en Genomique Vegetale, CNRS UMR 8114, Institut National de la Recherche Argonomique UMR 1165, Universite d Evry Val d Essonne, 91057 Evry Cedex, France
    Science 323:1600-4. 2009
    ..Our findings suggest an important role for RNAi in protecting genomes against long-term epigenetic defects...
  82. ncbi Angiosperm mitochondrial genomes and mutations
    Tomohiko Kubo
    Laboratory of Genetic Engineering, Research Faculty of Agriculture, Hokkaido University, N 9, W 9, Kita ku, Sapporo 060 8589, Japan
    Mitochondrion 8:5-14. 2008
    ..The involvement of nuclear genes in mitochondrial genome stability and organization is currently being revealed through the analysis of mutants...
  83. pmc A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers
    Emma S Mace
    The Department of Primary Industries and Fisheries, Queensland, Hermitage Research Station, Warwick, QLD 4370, Australia
    BMC Plant Biol 9:13. 2009
    ..Here, we report on the colinearity of six independent sorghum component maps and on the integration of these component maps into a single reference resource that contains commonly utilized SSRs, AFLPs, and high-throughput DArT markers...
  84. pmc Genetic mapping of wild introgressions into cultivated peanut: a way toward enlarging the genetic basis of a recent allotetraploid
    Daniel Foncéka
    Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement CIRAD, UMR Développement et Amélioration des Plantes, TA A96 3 Avenue Agropolis, Montpellier, France
    BMC Plant Biol 9:103. 2009
    ..duranensis and A. ipaënsis...
  85. pmc Mechanisms of recent genome size variation in flowering plants
    Jeffrey L Bennetzen
    Department of Genetics, University of Georgia, Athens, GA 30602, USA
    Ann Bot 95:127-32. 2005
    ..This research focuses on characterizing DNA removal from the rice and Arabidopsis genomes, and discusses whether loss of DNA has effectively competed with amplification in these species...
  86. pmc High-throughput genotyping by whole-genome resequencing
    Xuehui Huang
    National Center for Gene Research and Institute of Plant Physiology and Ecology, Shanghai Institutes of Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China
    Genome Res 19:1068-76. 2009
    ....
  87. pmc High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    BMC Genomics 11:38. 2010
    ....
  88. pmc Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
    Kenneth L McNally
    International Rice Research Institute, DAPO Box 7777, Metro Manila 1301, The Philippines
    Proc Natl Acad Sci U S A 106:12273-8. 2009
    ..These comprehensive SNP data provide a foundation for deep exploration of rice diversity and gene-trait relationships and their use for future rice improvement...
  89. pmc PlnTFDB: updated content and new features of the plant transcription factor database
    Paulino Pérez-Rodríguez
    Department of Molecular Biology, Institute of Biochemistry and Biology, GoFORSYS, University of Potsdam, Karl Liebknecht Str 24 25, Haus 20, 14476 Potsdam Golm, Germany
    Nucleic Acids Res 38:D822-7. 2010
    ..Moreover, the different species in PlnTFDB are linked to each other by means of orthologous genes facilitating cross-species comparisons...
  90. pmc A linkage map for the B-genome of Arachis (Fabaceae) and its synteny to the A-genome
    Marcio C Moretzsohn
    EMBRAPA Recursos Geneticos e Biotecnologia, Brasilia, DF, Brazil
    BMC Plant Biol 9:40. 2009
    ..This can be overcome by the utilization of wild species of Arachis, which present the A- and B-genomes in the diploid state, and show high levels of genetic variability...
  91. ncbi Populus: a model system for plant biology
    Stefan Jansson
    Department of Plant Physiology, Umea Plant Science Center, Umea University, SE 901 87 Umea, Sweden
    Annu Rev Plant Biol 58:435-58. 2007
    ....
  92. ncbi A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit
    Han Xiao
    Department of Horticulture and Crop Science, Ohio State University Ohio Agricultural Research and Development Center, Wooster, OH 44691, USA
    Science 319:1527-30. 2008
    ..Our discovery demonstrates that retrotransposons may be a major driving force in genome evolution and gene duplication, resulting in phenotypic change in plants...
  93. pmc Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a Barley case study
    Shengqiang Zhong
    Department of Agronomy, Iowa State University, Ames, Iowa 50011, USA
    Genetics 182:355-64. 2009
    ....
  94. ncbi Genome-wide identification of NBS resistance genes in Populus trichocarpa
    Annegret Kohler
    Unité Mixte de Recherche INRA UHP 1136 Interactions Arbres Microorganismes, Institut National de la Recherche Agronomique, Centre de Recherches de Nancy, 54280 Champenoux, France
    Plant Mol Biol 66:619-36. 2008
    ..The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation...
  95. ncbi High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3
    John Vogel
    USDA Western Regional Research Center, Albany, CA 94710, USA
    Plant Cell Rep 27:471-8. 2008
    ..Conducting the co-cultivation step under desiccating conditions produced the greatest improvement in transformation efficiency...
  96. pmc Brachypodium distachyon. A new model system for functional genomics in grasses
    J Draper
    Institute of Biological Sciences, Edward Llwyd Building, University of Wales, Aberystwyth, Ceredigion, SY23 3DA, United Kingdom
    Plant Physiol 127:1539-55. 2001
    ..Despite its small stature, B. distachyon has large seeds that should prove useful for studies on grain filling. Such biological characteristics represent important traits for study in temperate cereals...
  97. pmc Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
    Michael F Covington
    Department of Plant Biology, College of Biological Sciences, One Shields Avenue, University of California, Davis, California 95616, USA
    Genome Biol 9:R130. 2008
    ..In order to understand how circadian clocks benefit plants, it is necessary to identify the pathways and processes that are clock controlled...
  98. pmc Various spatiotemporal expression profiles of anther-expressed genes in rice
    Tokunori Hobo
    Bioscience and Biotechnology Center, Nagoya University, Furocho, Chikusa, Nagoya, 464 8601 Japan
    Plant Cell Physiol 49:1417-28. 2008
    ....
  99. ncbi BarleyBase/PLEXdb
    Roger P Wise
    Corn Insects and Crop Genetics Research, USDA ARS and Department of Plant Pathology and Center for Plant Responses to Environmental Stresses, Iowa State University, Ames, IA, USA
    Methods Mol Biol 406:347-63. 2007
    ....
  100. pmc Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
    Mauricio La Rota
    Department of Plant Breeding and Genetics, 240 Emerson Hall, Cornell University, Ithaca, NY 14853, USA
    BMC Genomics 6:23. 2005
    ....
  101. pmc Extensive demethylation of repetitive elements during seed development underlies gene imprinting
    Mary Gehring
    Howard Hughes Medical Institute HHMI, Fred Hutchinson Cancer Research Center FHCRC, 1100 Fairview Avenue North, Seattle, WA 98109, USA
    Science 324:1447-51. 2009
    ..These data suggest that imprinting in plants evolved from targeted methylation of transposable element insertions near genic regulatory elements followed by positive selection when the resulting expression change was advantageous...

Research Grants41

  1. Breaking Tolerance to a Tumor associated Antigen
    Scott Bingham; Fiscal Year: 2005
    ..Characterization of the transgenic plants will entail establishing whether the gene was inserted into the plant genome and establishing correct folding and concentration of the antigens LTB and MUC1 epitope in plant materials...
  2. A Novel System for Producing Pharmaceutical Proteins
    William Petersen; Fiscal Year: 2006
    ..of a geminivurus replication associated protein (Rep), the Gemini vector DMA is precisely excised from the plant genome and replicated episomally...
  3. DEVELOPMENT OF LARGE DNA METHODS FOR ARABIDOPSIS
    Joseph Ecker; Fiscal Year: 1991
    ..the development of technologies which will facilitate the isolation and analysis of large segments of a plant genome. At present, the cloning of plant genes about which nothing more is known than genetic map position is ..
  4. ALIGNMENT BASED METHODS FOR MOLECULAR SEQUENCE ANALYSIS
    Steven Henikoff; Fiscal Year: 2001
    ..This effort could yield new eukaryotic family members of great importance for understanding epigenetic phenomena, some of which, such as parental imprinting, are relevant to human disease. ..
  5. Maintenance of blocks-based tools for functional genomic
    Steven Henikoff; Fiscal Year: 2006
    ..These various components will be packaged to facilitate updates and local implementations. [unreadable] [unreadable]..
  6. Expression of Human Therapeutic Proteins in Transgenic Tobacco Chloroplasts
    Henry Daniell; Fiscal Year: 2010
    ..Successful completion of these studies would make transgenic chloroplasts ideal bioreactors for the production of safe and less expensive therapeutic proteins and open the door for in depth studies of membrane proteins. ..
  7. ANALYSIS OF A LIGHT-REGULATED DEVELOPMENT SWITCH
    Xing Wang Deng; Fiscal Year: 2003
    ..abstract_text> ..
  8. Functional Genomics of Nuclei
    David Galbraith; Fiscal Year: 2005
    ..Moreover, the constructs will be used to develop mouse lines from which investigators can perform the cell specific gene array studies, as well a studies of cell function within sections of living tissue. ..
  9. GENOME WIDE ASSOCIATION MAPPING IN ARABIDOPSIS THALIANA
    Justin O Borevitz; Fiscal Year: 2010
    ..The studies proposed here in Arabidopsis will suggest successful paths for this daunting undertaking, as associations can be quickly confirmed to identify novel QTL. ..
  10. EVOLUTION OF IMMUNE RECOGNITION AND EVASION
    Austin L Hughes; Fiscal Year: 2010
    ..In addition, by increasing our understanding of the population diversity and evolutionary history of human immune system genes, this research will enhance our knowledge of human immune function in health and disease. ..
  11. Mathematical and Statistical Models for Nucleosome
    Ji Ping Wang; Fiscal Year: 2010
    ..5) Automate the developed tools and algorithms. ..
  12. Novel estrogen receptor ligands from plant genomics
    John Littleton; Fiscal Year: 2006
    ..these may have therapeutic value in different types of hormone-sensitive cancer, but the full capacity of the plant genome to generate such ligands has not been explored...
  13. High Throughput Sequencer
    WILLIAM MCCOMBIE; Fiscal Year: 2007
    ..The availability of this technology on site is essential not only to support important ongoing research efforts but also to encourage new project development in a timely and cost-effective fashion. [unreadable] [unreadable] [unreadable]..
  14. Parallel high sensitivity gene expression monitoring
    Jean Marie Rouillard; Fiscal Year: 2007
    ..Further validation will be by conducting new experiments to detect weakly expressed genes involved in adipogenesis, and to monitor bacterial gene expression in infected host cells. [unreadable] [unreadable] [unreadable]..
  15. Application of plant genomics to alcoholic brain damage
    John Littleton; Fiscal Year: 2006
    ..unreadable] [unreadable]..
  16. DEVELOPMENT OF SCREENS FOR DRUGS IN ALCOHOL DEPENDENCE
    John Littleton; Fiscal Year: 2007
    ..abstract_text> ..
  17. Molecular Mechanisms of Genome Duplication
    ZENGJIAN CHEN; Fiscal Year: 2009
    ..abstract_text> ..
  18. The Rate and Molecular Spectrum of Spontaneous Mutations
    Michael Lynch; Fiscal Year: 2009
    ....
  19. Demographics and phylogeography of hybrid speciation
    JARED STRASBURG; Fiscal Year: 2007
    ..abstract_text> ..
  20. Comparative Genomics in the Enterobateriaceae
    Sandra Clifton; Fiscal Year: 2009
    ....
  21. DEVELOPING ZFN'S AS MOLECULAR TOOLS FOR TARGETED INTEGRATION
    Srinivasan Chandrasegaran; Fiscal Year: 2010
    ..We have chosen the chemokine (C-C motif) receptor 5 (CCR5) locus of the human genome as a model locus for ZFN-mediated targeted disruption in primary human HSPCs and HESCs. ..
  22. Efficient and Sensitive Mining System for G-Protein Coupled Receptors
    Etsuko Moriyama; Fiscal Year: 2009
    ..Finally we will perform actual mining from diverse genomes including underutilized short Expressed Sequence Tags data (Aim 4). We expect to obtain the most comprehensive set of these protein families from various genomes. ..
  23. Protein Functional Site Characterization and Analysis
    Philip E Bourne; Fiscal Year: 2010
    ..The results of this effort will be disseminated through the Protein Data Bank which is used by over 10,000 scientists every day. ..
  24. First International Biocurator Meeting
    Seung Rhee; Fiscal Year: 2006
    ..unreadable] [unreadable] [unreadable]..
  25. MECHANISMS OF ENZYMIC AND HYDRIDE TRANSFERS
    Gregory Petsko; Fiscal Year: 2006
    ..abstract_text> ..
  26. HYBRID ENDONUCLEASES FOR GENOMIC RESEARCH AND ANALYSIS
    Srinivasan Chandrasegaran; Fiscal Year: 2003
    ..Their long term goal is the application of chimeric nucleases to correct a genetic defect in an animal model. ..
  27. SEQUENCING TUMOR SUPPRESSOR LOCI
    WILLIAM MCCOMBIE; Fiscal Year: 2003
    ....
  28. Implications of Genomics Research on Racial Definition
    Seymour Garte; Fiscal Year: 2003
    ..A new paradigm of gene-specific variation will be developed for a biomedically useful method of division of the human population into groups based on criteria different from current definitions of race. ..
  29. A Literature Curation Tool for Organism Databases
    Seung Rhee; Fiscal Year: 2003
    ..The system will be central to the curation efforts of the collaborating databases and will be useable as a whole or in parts by other existing or emerging MODs. ..
  30. Semi-Automated Method for Annotating Repeated Sequences
    MITRICK JOHNS; Fiscal Year: 2004
    ..The coordinates of each repeat can be entered into a database along with additional information derived from other search software. Also, information about family relatedness and structural similarity can be hyperlinked to the display. ..
  31. Gene Duplication and Genome Evolution
    Austin Hughes; Fiscal Year: 2004
    ..5) Examining the role of transposable elements in duplication of genomic segments by testing for nonrandom association between these elements and putatively duplicated blocks in the yeast genome. ..
  32. Potential anti-relapse drugs: a plant genomics approach
    John Littleton; Fiscal Year: 2004
    ..In phase 3, potential products will be commercialized with a partner specializing in pharmaceutical natural products. ..
  33. Target Specificity of the Yeast Retrotransposon Ty5
    Daniel Voytas; Fiscal Year: 2005
    ....
  34. MUTATOR TRANSPORTABLE ELEMENTS OF MAIZE
    Virginia Walbot; Fiscal Year: 2005
    ..Host factors that regulate MuDR/Mu activities will also be characterized, because transposable element activities are an evolved nartnershiD of the transDoson and its host. ..
  35. A Bioinformatic Approach to Inferring Protein Contacts
    MARCELLA MCCLURE; Fiscal Year: 2005
    ..Several experimental laboratories have agreed to test the residue contact predictions resulting from these studies for Ebola, VSV and measles. ..
  36. Haplotype block structure of the Arabidopsis genome
    Christopher Toomajian; Fiscal Year: 2006
    ..Developing computational and statistical tools will be key to interpret and utilize the data emerging from these projects. ..
  37. ISMB 2005 Conf. Support for Students & Young Scientists
    PHILIP BOURNE; Fiscal Year: 2005
    ..This proposal seeks to assist them at this critical but resource-limited stage in their careers. ..
  38. Genetic Screens in Xenopus tropicalis
    DEREK STEMPLE; Fiscal Year: 2004
    ..tropicalis infrastructure development. Functional characterization of EST sequences will help integrate genetic and physical mapping efforts already underway. ..
  39. Tools & Data Resources in Support of Structural Genomics
    PHILIP BOURNE; Fiscal Year: 2006
    ..The proposed public resource will complement the private software and data resulting from the individual structural genomics centers as they undertake competitive high throughput structure determination. ..
  40. DEVELOPMENTAL BIOLOGY AND GENETICS OF THE MAIZE LEAF
    Michael Freeling; Fiscal Year: 2001
    ..We are elucidating a molecular genetic basis for heterochrony, the prevailing theory that links evolution with developmental biology. ..
  41. Variation and Quantitative Genetics in Model Organisms
    Detlef Weigel; Fiscal Year: 2004
    ..A second focus will be recent discoveries of how changes in key regulatory factors cause major phenotypic differences in more distantly related taxa. ..