secale cereale

Summary

Summary: A hardy grain crop, rye, grown in northern climates. It is the most frequent host to ergot (CLAVICEPS), the toxic fungus. Its hybrid with TRITICUM is TRITICALE, another grain.

Top Publications

  1. pmc A high density consensus map of rye (Secale cereale L.) based on DArT markers
    Paweł Milczarski
    Department of Plant Genetics, Breeding and Biotechnology, West Pomeranian University of Technology, Szczecin, Poland
    PLoS ONE 6:e28495. 2011
  2. pmc Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species
    K R Jaglo
    Department of Crop and Soil Science, Michigan State University, East Lansing, MI 48824, USA
    Plant Physiol 127:910-7. 2001
  3. pmc From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)
    Grit Haseneyer
    Plant Breeding, Technische Universitat Munchen, Centre of Life and Food Sciences Weihenstephan, 85354 Freising, Germany
    BMC Plant Biol 11:131. 2011
  4. pmc Comparative expression of Cbf genes in the Triticeae under different acclimation induction temperatures
    Chiara Campoli
    Department of Plant Science, Crop Development Centre, University of Saskatchewan, SK, Canada
    Mol Genet Genomics 282:141-52. 2009
  5. ncbi Genome merger: from sequence rearrangements in triticale to their elimination in wheat-rye addition lines
    Miguel Bento
    Centro de Botânica Aplicada à Agricultura, Secção de Genética, Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, 1349 017, Lisbon, Portugal
    Theor Appl Genet 121:489-97. 2010
  6. ncbi Reorganization and polarization of the meiotic bouquet-stage cell can be uncoupled from telomere clustering
    Carrie R Cowan
    Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720 3200, USA
    J Cell Sci 115:3757-66. 2002
  7. ncbi Nuclear dispositions of subtelomeric and pericentromeric chromosomal domains during meiosis in asynaptic mutants of rye (Secale cereale L.)
    E I Mikhailova
    Dept of Genetics, Saint-Petersburg State University, Russia
    J Cell Sci 114:1875-82. 2001
  8. ncbi Variations of tandem repeat, regulatory element, and promoter regions revealed by wheat-rye amphiploids
    Zong xiang Tang
    State Key Laboratory of Plant Breeding and Genetics, Sichuan Agricultural University, Ya an, Sichuan 625014, China
    Genome 51:399-408. 2008
  9. pmc High levels of nucleotide diversity and fast decline of linkage disequilibrium in rye (Secale cereale L.) genes involved in frost response
    Yongle Li
    Technische Universitat Munchen, Plant Breeding, Freising, Germany
    BMC Plant Biol 11:6. 2011
  10. pmc DArT markers for the rye genome - genetic diversity and mapping
    Hanna Bolibok-Bragoszewska
    Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences SGGW, 02 776 Warsaw, Poland
    BMC Genomics 10:578. 2009

Detail Information

Publications244 found, 100 shown here

  1. pmc A high density consensus map of rye (Secale cereale L.) based on DArT markers
    Paweł Milczarski
    Department of Plant Genetics, Breeding and Biotechnology, West Pomeranian University of Technology, Szczecin, Poland
    PLoS ONE 6:e28495. 2011
    Rye (Secale cereale L.) is an economically important crop, exhibiting unique features such as outstanding resistance to biotic and abiotic stresses and high nutrient use efficiency...
  2. pmc Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species
    K R Jaglo
    Department of Crop and Soil Science, Michigan State University, East Lansing, MI 48824, USA
    Plant Physiol 127:910-7. 2001
    ..cv Norstar) and rye (Secale cereale L. cv Puma), which cold acclimate, as well as in tomato (Lycopersicon esculentum var...
  3. pmc From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)
    Grit Haseneyer
    Plant Breeding, Technische Universitat Munchen, Centre of Life and Food Sciences Weihenstephan, 85354 Freising, Germany
    BMC Plant Biol 11:131. 2011
    ..Exploration of the genetic potential and implementation of genome-based breeding strategies for efficient rye (Secale cereale L.) cultivar improvement have been hampered by the lack of genome sequence information...
  4. pmc Comparative expression of Cbf genes in the Triticeae under different acclimation induction temperatures
    Chiara Campoli
    Department of Plant Science, Crop Development Centre, University of Saskatchewan, SK, Canada
    Mol Genet Genomics 282:141-52. 2009
    ..In the Triticeae, rye (Secale cereale L...
  5. ncbi Genome merger: from sequence rearrangements in triticale to their elimination in wheat-rye addition lines
    Miguel Bento
    Centro de Botânica Aplicada à Agricultura, Secção de Genética, Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, 1349 017, Lisbon, Portugal
    Theor Appl Genet 121:489-97. 2010
    ....
  6. ncbi Reorganization and polarization of the meiotic bouquet-stage cell can be uncoupled from telomere clustering
    Carrie R Cowan
    Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720 3200, USA
    J Cell Sci 115:3757-66. 2002
    ..This work provides evidence of meiotic cell polarization and suggests that telomeres may be positioned relative to an asymmetry present in the cell at the time of bouquet formation...
  7. ncbi Nuclear dispositions of subtelomeric and pericentromeric chromosomal domains during meiosis in asynaptic mutants of rye (Secale cereale L.)
    E I Mikhailova
    Dept of Genetics, Saint-Petersburg State University, Russia
    J Cell Sci 114:1875-82. 2001
    ..in pollen mother cells (PMCs) were tracked during meiosis in wildtype and two asynaptic mutants of rye (Secale cereale L.) by means of fluorescence in situ hybridization (FISH)...
  8. ncbi Variations of tandem repeat, regulatory element, and promoter regions revealed by wheat-rye amphiploids
    Zong xiang Tang
    State Key Laboratory of Plant Breeding and Genetics, Sichuan Agricultural University, Ya an, Sichuan 625014, China
    Genome 51:399-408. 2008
    ..and rye (Secale cereale L...
  9. pmc High levels of nucleotide diversity and fast decline of linkage disequilibrium in rye (Secale cereale L.) genes involved in frost response
    Yongle Li
    Technische Universitat Munchen, Plant Breeding, Freising, Germany
    BMC Plant Biol 11:6. 2011
    Rye (Secale cereale L.) is the most frost tolerant cereal species...
  10. pmc DArT markers for the rye genome - genetic diversity and mapping
    Hanna Bolibok-Bragoszewska
    Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences SGGW, 02 776 Warsaw, Poland
    BMC Genomics 10:578. 2009
    Implementation of molecular breeding in rye (Secale cereale L.) improvement programs depends on the availability of high-density molecular linkage maps...
  11. ncbi High-fiber rye bread and insulin secretion and sensitivity in healthy postmenopausal women
    Katri S Juntunen
    Department of Clinical Nutrition, University of Kuopio, Kuopio, Finland
    Am J Clin Nutr 77:385-91. 2003
    ..Fiber and whole-cereal intakes may protect against hyperinsulinemia and the risk of type 2 diabetes...
  12. ncbi Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags
    Elena K Khlestkina
    Institut für Pflanzengenetik und Kulturpflanzenforschung IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 109:725-32. 2004
    ..Forty-four of the WMS loci mapped in rye were found to be homologous to those mapped in bread wheat ( Triticum aestivum L.)...
  13. pmc Genetic and epigenetic variations induced by wheat-rye 2R and 5R monosomic addition lines
    Shulan Fu
    State Key Laboratory of Plant Breeding and Genetics, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, People s Republic of China
    PLoS ONE 8:e54057. 2013
    ..Monosomic alien addition lines (MAALs) can easily induce structural variation of chromosomes and have been used in crop breeding; however, it is unclear whether MAALs will induce drastic genetic and epigenetic alterations...
  14. ncbi Reproducibility of plasma alkylresorcinols during a 6-week rye intervention study in men with prostate cancer
    Rikard Landberg
    Department of Food Science, Swedish University of Agriculture Science, SE 75007 Uppsala, Sweden
    J Nutr 139:975-80. 2009
    ..This suggests that the plasma AR concentration can be used as a reliable short- to medium-term biomarker for whole-grain wheat and rye under intervention conditions where intake is kept constant...
  15. ncbi Plasma alkylresorcinol concentrations correlate with whole grain wheat and rye intake and show moderate reproducibility over a 2- to 3-month period in free-living Swedish adults
    Agneta Andersson
    Department of Food, Nutrition and Dietetics, Uppsala University, Uppsala, Sweden
    J Nutr 141:1712-8. 2011
    ..05) when using mean values from both occasions. This suggests that plasma AR concentration in fasting samples can be used as a biomarker of rye + wheat WG intake in free-living populations with a high and consistent WG intake...
  16. ncbi A PCR-based marker for targeting small rye segments in wheat background
    Cristina M Katto
    Laboratory of Plant Genetics, Graduate School of Agriculture, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
    Genes Genet Syst 79:245-50. 2004
    ..The PCR amplified the 1.4 kb fragment in all the plant materials examined. We believe this PCR primer set will be useful as a universal PCR-based marker for the introgression of rye chromosome segments in the wheat genome...
  17. ncbi Suitability of a batch in vitro fermentation model using human faecal microbiota for prediction of conversion of flaxseed lignans to enterolactone with reference to an in vivo rat model
    Anna Marja Aura
    VTT Biotechnology, 1500, 02044 VTT, Finland
    Eur J Nutr 45:45-51. 2006
    ..In vitro fermentation models have been used widely for studies of shortchain fatty acid (SCFA) formation from carbohydrates, whereas the suitability of these methods for enterolactone (ENL) formation has received less attention...
  18. ncbi Molecular cytogenetic evaluation of chromosome instability in Triticum aestivum-Secale cereale disomic addition lines
    E Szakacs
    Agricultural Research Institute of the Hungarian Academy of Sciences, Martonvasar, Hungary
    J Appl Genet 51:149-52. 2010
    ....
  19. ncbi Production and characterization of amphiploids of Aegilops kotschyi and Ae. biuncialis with Secale cereale, and of backcross hybrids of Ae. biuncialis x S. cereale amphiploids with 2x and 4x S. cereale
    Barbara Wojciechowska
    Institute of Plant Genetics, Polish Academy of Sciences, Strzeszynska 34, 60 479 Poznan, Poland
    J Appl Genet 46:157-61. 2005
    ..The BC1 plants (2n = 4x = 28 and 2n = 5x = 35, respectively) were phenotypically intermediate between the parents and vigorous in vegetative growth. Some seeds were obtained only from the 35-chromosome BC1 hybrids...
  20. ncbi Activities of cell wall degrading enzymes in autolyzing cultures of three Fusarium culmorum isolates: growth-promoting, deleterious and pathogenic to rye (Secale cereale)
    Jolanta Jaroszuk-Scisel
    Department of Environmental Microbiology, University of Maria Curie Skłodowska, Lublin, Poland
    Mycologia 103:929-45. 2011
    ..The differences in the activities of the individual CWDE released to the culture by the particular isolates are considered to be one of the key factors responsible for the observed types of plant-fungal interactions...
  21. pmc Directed motion of telomeres in the formation of the meiotic bouquet revealed by time course and simulation analysis
    Peter M Carlton
    University of California, Berkeley Department of Molecular and Cell Biology Berkeley, California 94720, USA
    Mol Biol Cell 14:2832-43. 2003
    ..Directed motion, as opposed to random diffusion, was required to reproduce our observations, implying that an active process moves chromosomes to cause telomere clustering...
  22. ncbi Effect of colchicine and telocentric chromosome conformation on centromere and telomere dynamics at meiotic prophase I in wheat-rye additions
    Eduardo Corredor
    Departamento de Genetica, Facultad de Biologia, Universidad Complutense, 28040, Madrid, Spain
    Chromosome Res 15:231-45. 2007
    ..However, telomere convergence is needed for bringing together the majority of homologous pairs that normally occupy separate territories in premeiotic nuclei...
  23. ncbi The identification of QTLs associated with the in vitro response of rye (Secale cereale L.)
    Hanna Bolibok
    Department of Plant Genetics, Breeding and Biotechnology, Warsaw Agricultural University, Nowoursynowska 159, 02 776, Warszawa, Poland
    Cell Mol Biol Lett 12:523-35. 2007
    ..conducted in order to identify quantitative trait loci (QTLs) for the in vitro culture response of winter rye (Secale cereale L.) immature embryos and immature inflorescences...
  24. ncbi Genetic and physical mapping of sequence-specific amplified polymorphic (SSAP) markers on the 1RS chromosome arm of rye in a wheat background
    E D Nagy
    Agricultural Research Institute of the Hungarian Academy of Sciences, Martonvasar, 2462, Brunszvik 2, Hungary
    Theor Appl Genet 107:1271-7. 2003
    ..Physical mapping suggested an even distribution of the SSAP markers along the total length of the 1RS chromosome arm...
  25. ncbi Meiotic telomere clustering is inhibited by colchicine but does not require cytoplasmic microtubules
    Carrie R Cowan
    Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720 3200, USA
    J Cell Sci 115:3747-56. 2002
    ....
  26. pmc Expression analysis of somatic embryogenesis-related SERK, LEC1, VP1 and NiR ortologues in rye (Secale cereale L.)
    A Gruszczyńska
    Department of Plant Genetics, Breeding and Biotechnology, Warsaw Agricultural University, Warsaw, Poland
    J Appl Genet 52:1-8. 2011
    The genetic basis of the regeneration process in cultured immature embryos of rye (Secale cereale L.) was analyzed...
  27. pmc Effects of cereal breakfasts on postprandial glucose, appetite regulation and voluntary energy intake at a subsequent standardized lunch; focusing on rye products
    Liza Ah Rosén
    Department of Food Technology, Engineering and Nutrition, Lund University, Sweden
    Nutr J 10:7. 2011
    ..The objective of the present paper was to evaluate the mechanism for a reduced postprandial insulin demand with rye products, and to explore possible appetite regulating properties...
  28. ncbi Metabolomic analysis of plasma metabolites that may mediate effects of rye bread on satiety and weight maintenance in postmenopausal women
    Maria Lankinen
    VTT Technical Research Centre of Finland, Kuopio, Finland
    J Nutr 141:31-6. 2011
    ..The results suggest that 8-wk consumption of high-fiber rye bread increases metabolites that might mediate positive effects of rye bread on satiety and weight maintenance...
  29. ncbi Bran fermentation as a means to enhance technological properties and bioactivity of rye
    K Katina
    VTT Biotechnology, VTT Technical Research Centre of Finland, Tietotie 2, P O Box 1000, 02044 VTT, Espoo, Finland
    Food Microbiol 24:175-86. 2007
    ..The results suggest that fermentation is a potential bioprocessing technology for improved technological properties and bioactivity of rye bran...
  30. pmc Integrated genetic map and genetic analysis of a region associated with root traits on the short arm of rye chromosome 1 in bread wheat
    Sundrish Sharma
    Department of Botany and Plant Sciences, University of California, Riverside, CA 92521 0124, USA
    Theor Appl Genet 119:783-93. 2009
    ..It appears that the terminal 15% of the rye 1RS arm carries gene(s) for greater rooting ability in wheat...
  31. ncbi NMR-based metabonomics reveals that plasma betaine increases upon intake of high-fiber rye buns in hypercholesterolemic pigs
    Hanne Christine Bertram
    Department of Food Science, Aarhus University, Faculty of Agricultural Sciences, Aarslev, Denmark
    Mol Nutr Food Res 53:1055-62. 2009
    ..The 3.29 ppm signal is ascribed to N(CH(3))(3) protons in betaine, which may be an important contributor to the health promoting effects of rye...
  32. ncbi Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome
    B Hackauf
    Julius Kühn Institute, Federal Research Institute for Cultivated Plants, Institute for Breeding Research on Agricultural Crops, Erwin Baur Str 27, 06484, Quedlinburg, Germany
    Theor Appl Genet 118:371-84. 2009
    ..Furthermore, the aligned markers provide genomic anchor points between rye and rice, enabling the identification of conserved ortholog set markers for rye. Perspectives of rice as a model for genome analysis in rye are discussed...
  33. pmc Molecular assembly of meiotic proteins Asy1 and Zyp1 and pairing promiscuity in rye (Secale cereale L.) and its synaptic mutant sy10
    E I Mikhailova
    Department of Genetics, Saint Petersburg State University, Russian Academy of Sciences, Russia
    Genetics 174:1247-58. 2006
    ..thaliana (Asy1 and Zyp1) was studied immunologically at meiotic prophase of meiosis of wild-type rye (Secale cereale) and its synaptic mutant sy10, using antibodies derived from A. thaliana...
  34. ncbi Content and molecular-weight distribution of dietary fiber components in whole-grain rye flour and bread
    Roger Andersson
    Department of Food Science, Swedish University of Agricultural Sciences SLU, Post Office Box 7051, SE 750 07 Uppsala, Sweden
    J Agric Food Chem 57:2004-8. 2009
    ..97 x 10(6) g/mol. During bread making, the molecular weight of the beta-glucan was substantially degraded...
  35. pmc Effect of rye bread breakfasts on subjective hunger and satiety: a randomized controlled trial
    Hanna Isaksson
    Department of Food Science, Swedish University of Agricultural Sciences, SE 750 07 Uppsala, Sweden
    Nutr J 8:39. 2009
    ..The aim of the present study was to investigate subjective appetite during 8 h after intake of iso-caloric rye bread breakfasts varying in rye dietary fibre composition and content...
  36. ncbi New genetic map of rye composed of PCR-based molecular markers and its alignment with the reference map of the DS2 x RXL10 intercross
    Paweł Milczarski
    Department of Genetics and Plant Breeding, University of Agriculture in Szczecin, Slowackiego 17, 71 434 Szczecin, Poland
    J Appl Genet 48:11-24. 2007
    ..This abundance of RAPD marker loci in the rye genetic map can be exploited for development of SCARs in regions containing important genes or QTL...
  37. ncbi Timing and rate of genome variation in triticale following allopolyploidization
    Xue Feng Ma
    Department of Agronomy, University of Missouri, Columbia, MO 65211, USA
    Genome 49:950-8. 2006
    ..b>Secale cereale L...
  38. ncbi Metabolic profiling of liver from hypercholesterolemic pigs fed rye or wheat fiber and from normal pigs. High-resolution magic angle spinning 1H NMR spectroscopic study
    Hanne C Bertram
    Department of Food Science and Department of Animal Health, Welfare and Nutrition, Danish Institute of Agricultural Sciences, Box 50, DK 8830 Tjele, Denmark hannec bertram agrsci dk
    Anal Chem 79:168-75. 2007
    ....
  39. pmc Revolver is a new class of transposon-like gene composing the triticeae genome
    Motonori Tomita
    Molecular Genetics Laboratory, Faculty of Agriculture, Tottori University, 101, Koyama minami 4 chome, Tottori City, Tottori 680 8553, Japan
    DNA Res 15:49-62. 2008
    ..DNA blot analysis of Triticeae plants shows that Revolver has existed since the diploid progenitor of wheat, and has been amplified or lost in several species during the evolution of the Triticeae...
  40. ncbi Nuclear architecture and chromosome dynamics in the search of the pairing partner in meiosis in plants
    T Naranjo
    Departamento de Genetica, Facultad de Biologia, Universidad Complutense de Madrid, Madrid, Spain
    Cytogenet Genome Res 120:320-30. 2008
    ..This review is focused on the contribution studies on plants are providing to the knowledge of the initial steps of the meiotic process...
  41. pmc An ALMT1 gene cluster controlling aluminum tolerance at the Alt4 locus of rye (Secale cereale L)
    N C Collins
    Australian Centre for Plant Functional Genomics, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
    Genetics 179:669-82. 2008
    Aluminum toxicity is a major problem in agriculture worldwide. Among the cultivated Triticeae, rye (Secale cereale L.) is one of the most Al tolerant and represents an important potential source of Al tolerance for improvement of wheat...
  42. ncbi Alkylresorcinols in cereals and cereal products
    Alastair B Ross
    Department of Food Science, Swedish University of Agricultural Sciences SLU, Uppsala, Sweden
    J Agric Food Chem 51:4111-8. 2003
    ..Cereal products varied greatly in AR content, with those containing wheat bran or whole rye having the highest content...
  43. pmc Aegilops-Secale amphiploids: chromosome categorisation, pollen viability and identification of fungal disease resistance genes
    M Kwiatek
    Laboratory of Distant Crosses, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszynska 34, Poznan, Poland
    J Appl Genet 53:37-40. 2012
    ..assays) in a collection of 6× and 4× amphiploids originating from crosses between five Aegilops species and Secale cereale. In the five hexaploid amphiploids Aegilops kotschyi × Secale cereale (genome UUSSRR), Ae. variabilis × S...
  44. ncbi Unequal chromosome division and inter-genomic translocation occurred in somatic cells of wheat-rye allopolyploid
    Zongxiang Tang
    State Key Laboratory of Plant Breeding and Genetics, Sichuan Agriculture University, Ya an 625014, Sichuan, China
    J Plant Res 125:283-90. 2012
    ..The unequal chromosome division in somatic cell could induce chromosome elimination at the early stages of allopolyploidization...
  45. ncbi Determinants of plasma alkylresorcinol concentration in Danish post-menopausal women
    R Landberg
    Department of Food Science, Swedish University of Agriculture Science, SLU, Uppsala, Sweden
    Eur J Clin Nutr 65:94-101. 2011
    ..In this study, we investigated potential determinants of plasma AR concentration in a free-living population...
  46. ncbi Identification of Bilby, a diverged centromeric Ty1-copia retrotransposon family from cereal rye (Secale cereale L.)
    M G Francki
    Plant Sciences, Faculty of Agriculture, The University of Western Australia, Nedlands, Australia
    Genome 44:266-74. 2001
    ..A quantitative analysis shows that the breakpoint in IDS.1RL and 1DL.1RS and recombinant lines containing proximal rye chromatin have a portion of the rye centromere that may contribute to the normal function of the centromeric region...
  47. ncbi Leaf-rust resistance in rye (Secale cereale L.). 2. Genetic analysis and mapping of resistance genes Pr3, Pr4, and Pr5
    S R Roux
    Institute of Agricultural Crops, Federal Centre for Breeding Research on Cultivated Plants, Rudolf Schick Platz 3a, 18190 Gross Lüsewitz, Germany
    Theor Appl Genet 110:192-201. 2004
    ..The contributions of these genes to resistance breeding in rye and wheat are discussed...
  48. ncbi Discrimination of repetitive sequences polymorphism in Secale cereale by genomic in situ hybridization-banding
    Jian Ping Zhou
    Shcool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
    J Integr Plant Biol 50:452-6. 2008
    ..a technique slightly modified from conventional GISH, was used to probe the Chinese native rye (Secale cereale L...
  49. ncbi Distribution of 5-methylcytosine residues in 5S rRNA genes in Arabidopsis thaliana and Secale cereale
    J Fulnecek
    Institute of Biophysics, Academy of Sciences of the Czech Republic, Kralovopolska 135, CZ 612 65 Brno, Czech Republic
    Mol Genet Genomics 268:510-7. 2002
    ..sequencing was used to localise 5-methylcytosine residues (mC) in 5S rRNA genes of Arabidopsis thaliana and Secale cereale. The maps of mC distribution were compared with the previously published map of the corresponding region in ..
  50. pmc Identification of the chromosome complement and the spontaneous 1R/1V translocations in allotetraploid Secale cereale × Dasypyrum villosum hybrids through cytogenetic approaches
    Tomasz Ksiazczyk
    Laboratory of Cytogenetics and Molecular Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszynska 34, Poznan, Poland
    J Appl Genet 52:305-11. 2011
    ..This study identifies the number and chromosomal location of ribosomal DNA (rDNA) sites between Secale cereale, Dasypyrum villosum, and their allotetraploid S. cereale × D. villosum hybrids...
  51. pmc The specificity and genetic background of the rye (Secale cereale L.) tissue culture response
    Małgorzata Targońska
    Department of Plant Genetics, Breeding and Biotechnology, Faculty of Horticulture and Landscape Architecture, Warsaw University of Life Sciences, SGGW, Nowoursynowska St 159, 02 776, Warsaw, Poland
    Plant Cell Rep 32:1-9. 2013
    ..The aim of this review is to summarize the limited current knowledge of this topic...
  52. ncbi CENH3 distribution and differential chromatin modifications during pollen development in rye (Secale cereale L.)
    Andreas Houben
    Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr 3, 06466, Gatersleben, Germany
    Chromosome Res 19:471-80. 2011
    ..We analysed the chromatin properties of both types of nuclei after first and second pollen mitosis in rye (Secale cereale)...
  53. ncbi Testcross performance of rye introgression lines developed by marker-assisted backcrossing using an Iranian accession as donor
    K C Falke
    State Plant Breeding Institute, Universitaet Hohenheim, Stuttgart, Germany
    Theor Appl Genet 118:1225-38. 2009
    ..We evaluated the first two introgression libraries in rye (Secale cereale L.) on the phenotypic and molecular level...
  54. pmc Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1
    Silvia Fluch
    Health and Environment Department, BioResources, Austrian Institute of Technology, Tulln, Austria
    PLoS ONE 7:e30784. 2012
    The purpose of the study is to elucidate the sequence composition of the short arm of rye chromosome 1 (Secale cereale) with special focus on its gene content, because this portion of the rye genome is an integrated part of several ..
  55. ncbi Aegilops-rye amphiploids and substitution rye used for introgression of genetic material into rye (Secale cereale L.)
    B Apolinarska
    Institute of Plant Genetics, Polish Academy of Science, Poznan, Poland
    J Appl Genet 51:413-20. 2010
    ..In backcrosses of 4x substitution rye with amphiploids Ae. variabilis × rye 4x, fertile 4x rye plants containing Aegilops chromatin were produced in the BC2 generation...
  56. pmc Postprandial differences in the plasma metabolome of healthy Finnish subjects after intake of a sourdough fermented endosperm rye bread versus white wheat bread
    Isabel Bondia-Pons
    Department of Public Health and Clinical Nutrition, Clinical Nutrition, Food and Health Research Centre, University of Eastern Finland, Kuopio Campus, PO Box 1627, FIN 70211 Kuopio, Finland
    Nutr J 10:116. 2011
    ..The aim of this study was to use the metabolomics approach to identify potential metabolites related to amino acid metabolism involved in this mechanism...
  57. ncbi Nuclear magnetic resonance-based metabolomics enable detection of the effects of a whole grain rye and rye bran diet on the metabolic profile of plasma in prostate cancer patients
    Ali A Moazzami
    Department of Food Science, Swedish University of Agricultural Sciences, Uppsala, Sweden
    J Nutr 141:2126-32. 2011
    ..reduction in prostate-specific antigen and reduced 24-h insulin secretion. In addition, the increase in betaine and N,N-dimethylglycine and the decrease in homocysteine show a favorable shift in homocysteine metabolism after RP intake...
  58. ncbi Production and morphology of the hybrids Aegilops kotschyi x Secale cereale and Ae. biuncialis x S. cereale
    Barbara Wojciechowska
    Institute of Plant Genetics, Polish Academy of Sciences, Poznan, Poland
    J Appl Genet 43:279-85. 2002
    Hybrids between Aegilops kotschyi and Ae. biuncialis with Secale cereale were synthesized. Five Ae. kotschyi and four Ae. biuncialis accessions, as well as one inbred and four self-compatible forms of Secale cereale were used for crossing...
  59. ncbi Hybrids and amphiploids of Aegilops ovata L. with Secale cereale L.: production, morphology and fertility
    Barbara Wojciechowska
    Institute of Plant Genetics, Polish Academy of Sciences, ul Strzeszynska 34, 60 479 Poznan, Poland
    J Appl Genet 43:415-21. 2002
    Hybrids (2n = 3x = 21) between Aegilops ovata and Secale cereale were produced via embryo rescue. Most hybrid morphological traits were intremediate between parents, the plants grew vigorously but were completely sterile...
  60. ncbi A consensus map of rye integrating mapping data from five mapping populations
    J Perry Gustafson
    USDA ARS, PGRU, 206 Curtis Hall, University of Missouri, Columbia, MO 65211, USA
    Theor Appl Genet 118:793-800. 2009
    A consensus map of rye (Secale cereale L.) was constructed using JoinMap 2.0 based on mapping data from five different mapping populations, including 'UC90' x 'E-line', 'P87' x 'P105', 'I(0.1)-line' x 'I(0...
  61. ncbi Genetic mapping of Dn7, a rye gene conferring resistance to the Russian wheat aphid in wheat
    Garret R Anderson
    Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523, USA
    Theor Appl Genet 107:1297-303. 2003
    ..4 cM and 7.4 cM from Dn7, respectively. Dn7 confers antixenosis, and provides a higher level of resistance than that provided by Dn4. The applications of Dn7 and the linked markers in wheat breeding are discussed...
  62. ncbi Plasma enterolactone or intestinal Bifidobacterium levels do not explain adenoma formation in multiple intestinal neoplasia (Min) mice fed with two different types of rye-bran fractions
    S Oikarinen
    Department of Applied Chemistry and Microbiology, Division of Nutrition, PO Box 27, FIN 00014 University of Helsinki, Finland
    Br J Nutr 90:119-25. 2003
    ..In conclusion, rye bran and rye fractions influence adenoma formation in Min mice to a varying degree but plasma enterolactone levels or the production of bifidogenic bacteria do not mediate the effect...
  63. ncbi A doubled haploid rye linkage map with a QTL affecting α-amylase activity
    Teija Tenhola-Roininen
    Plant Genomics, Biotechnology and Food Research, MTT Agrifood Research Finland, Myllytie 1, Jokioinen, Finland
    J Appl Genet 52:299-304. 2011
    ..The QTL was localized on the long arm of chromosome 5R. Microsatellites SCM74, RMS1115, and SCM77, nearest to the QTL, can be used for marker-assisted selection as a part of a rye breeding program to decrease sprouting damage...
  64. ncbi Unexpected behavior of an inverted rye chromosome arm in wheat
    Adam J Lukaszewski
    Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
    Chromosoma 117:569-78. 2008
    ..Instances of synapsis strictly limited to the chiasma-capable segments of the arm suggest that, in rye, both recombination-dependent and recombination-independent mechanisms for homologue recognition must be present...
  65. ncbi Characterization of variation in the lignan content and composition of winter rye, spring wheat, and spring oat
    Annika I Smeds
    Laboratory of Wood and Paper Chemistry, Process Chemistry Centre, Abo Akademi University, Porthansgatan 3 5, FI 20500 Turku, Finland
    J Agric Food Chem 57:5837-42. 2009
    ..This study shows that varying cereal lignan concentrations reported in different studies may be, besides differences in analytical methods, largely dependent upon natural variations...
  66. ncbi Antioxidant effects of phenolic rye (Secale cereale L.) extracts, monomeric hydroxycinnamates, and ferulic acid dehydrodimers on human low-density lipoproteins
    M F Andreasen
    Department of Horticulture, Danish Institute of Agricultural Sciences, Kirstinebjergvej 10, DK-5792 Aarslev, Denmark
    J Agric Food Chem 49:4090-6. 2001
    ..The data suggest that especially rye bran provides a source of dietary phenolic antioxidants that may have potential health effects...
  67. ncbi Chiasma frequency is region specific and chromosome conformation dependent in a rye chromosome added to wheat
    T Naranjo
    Departamento de Genetica, Facultad de Biologia, Universidad Complutense, Madrid, Spain
    Cytogenet Genome Res 129:133-42. 2010
    ..Results demonstrate that crossover formation depends on the DNA sequence or the chromatin organization of each chromosome region and that homologous alignment, synapsis and chiasma formation may be conditioned by chromosome conformation...
  68. ncbi Content of phenolic acids and ferulic acid dehydrodimers in 17 rye (Secale cereale L.) varieties
    M F Andreasen
    Department of Fruit, Vegetable and Food Science, Danish Institute of Agricultural Sciences, Kirstinebjergvej 10, DK 5792 Aarslev, Denmark
    J Agric Food Chem 48:2837-42. 2000
    ..ferulic acid dehydrodimers were quantified by HPLC analysis after alkaline hydrolysis in kernels of 17 rye (Secale cereale L.) varieties grown in one location in Denmark during 1997 and 1998. Significant variations (P < 0...
  69. ncbi Painting the rye genome with genome-specific sequences
    Miriam González-García
    Departamento de Genetica, Universidad Complutense, Madrid, Spain
    Genome 54:555-64. 2011
    ..Secale sylvestre Host, and Secale africanum Stapf. Thus, UCM600 can be used to detect Secale DNA introgressed from wild species in a wheat background...
  70. ncbi Qualitative characterization of benzoxazinoid derivatives in whole grain rye and wheat by LC-MS metabolite profiling
    Kati Hanhineva
    Institute of Public Health and Clinical Nutrition, Food and Health Research Centre, University of Eastern Finland, Kuopio, Finland
    J Agric Food Chem 59:921-7. 2011
    ..This paper presents an important addition to the information on the phytochemical composition of rye and wheat grains, which deserves attention in the discussion of the potential health-promoting effects of these grains...
  71. ncbi Dissection of rye chromosome 1R in common wheat
    Masashi Tsuchida
    Laboratory of Plant Genetics, Graduate School of Agriculture, Kyoto University, Kyoto, Japan
    Genes Genet Syst 83:43-53. 2008
    ....
  72. ncbi Genetic diversity amongst landraces of rye (Secale cereale L.) from northern Europe
    Karin Persson
    Department of Crop Science, Swedish University of Agricultural Sciences SLU, Alnarp
    Hereditas 136:29-38. 2002
    Genetic variation and diversity were estimated for three improved varieties and 18 landraces of Secale cereale, originating from the northern Europe...
  73. ncbi A consensus map of chromosome 6R in rye (Secale cereale L.)
    Stefan Stojałowski
    Department of Genetics and Plant Breeding, Agricultural University, Słowackiego 17, 71 434 Szczecin, Poland
    Cell Mol Biol Lett 14:190-8. 2009
    ..3 cM, and the total map length is 135.5 cM. This consensus map may be used as a source of molecular markers for the rapid development of new maps of chromosome 6R in any mapping population...
  74. ncbi The nature and destiny of translocated B-chromosome-specific satellite DNA of rye
    Robert Hasterok
    Department of Plant Anatomy and Cytology, University of Silesia, Katowice, Poland
    Chromosome Res 10:83-6. 2002
    ..by fluorescence in situ hybridisation from an irradiated M1 generation of an experimental population of rye (Secale cereale L.) to its M2 progeny...
  75. ncbi Rye SCAR markers for male fertility restoration in the P cytoplasm are also applicable to marker-assisted selection in the C cytoplasm
    Stefan Stojałowski
    Department of Genetics and Plant Breeding, Agricultural University, Slowackiego 17, 71 437 Szczecin, Poland
    J Appl Genet 46:371-3. 2005
    The study aimed at testing the usefulness of recently developed SCAR markers on rye (Secale cereale L.) chromosome 4R in hybrid breeding based on the C source of male sterility-inducing cytoplasm...
  76. ncbi Growth inhibition and root ultrastructure of cucumber seedlings exposed to allelochemicals from rye (Secale cereale)
    N R Burgos
    Department of Crop, Soil, and Environmental Sciences, University of Arkansas, 1366 W Altheimer Dr, Fayetteville, Arkansas 72704, USA
    J Chem Ecol 30:671-89. 2004
    ..Changes in cellular ultrastructure indicated that BOA and DIBOA reduced root growth by disrupting lipid metabolism, reducing protein synthesis, and reducing transport or secretory capabilities...
  77. ncbi Somatic embryogenesis and fertile green plant regeneration from suspension cell-derived protoplasts of rye ( Secale cereale L.)
    R Ma
    Laboratory of Plant Physiology and Molecular Biology, Department of Biology, University of Turku, 20014 Turku, Finland
    Plant Cell Rep 22:320-7. 2003
    ..somatic embryogenesis and fertile green plant regeneration from suspension cell-derived protoplasts of rye (Secale cereale L. cv. Auvinen) was developed...
  78. pmc Endosperm and whole grain rye breads are characterized by low post-prandial insulin response and a beneficial blood glucose profile
    Liza A H Rosén
    Division of Applied Nutrition and Food Chemistry, Department of Food Technology, Engineering and Nutrition, Lund University, Lund, Sweden
    Nutr J 8:42. 2009
    ..The objective of this study was to explore the mechanism for a reduced post-prandial insulin demand with rye products...
  79. ncbi Effect of cereal test breakfasts differing in glycemic index and content of indigestible carbohydrates on daylong glucose tolerance in healthy subjects
    Anne C Nilsson
    Division of Applied Nutrition and Food Chemistry, Department of Food Technology, Engineering and Nutrition, Lund University, Sweden
    Am J Clin Nutr 87:645-54. 2008
    ..Frequent hyperglycemic episodes are increasingly being associated with an increased risk of type 2 diabetes and cardiovascular disease...
  80. pmc A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R
    Jan Bartos
    Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
    BMC Plant Biol 8:95. 2008
    Rye (Secale cereale L.) belongs to tribe Triticeae and is an important temperate cereal. It is one of the parents of man-made species Triticale and has been used as a source of agronomically important genes for wheat improvement...
  81. pmc Whole grain consumption and risk of colorectal cancer: a population-based cohort of 60,000 women
    S C Larsson
    Division of Nutritional Epidemiology, The National Institute of Environmental Medicine, Karolinska Institutet, Box 210, SE 17177 Stockholm, Sweden
    Br J Cancer 92:1803-7. 2005
    ..65 (95% CI, 0.45-0.94; P-value for trend=0.04). Our findings suggest that high consumption of whole grains may decrease the risk of colon cancer in women...
  82. pmc Cold-regulated cereal chloroplast late embryogenesis abundant-like proteins. Molecular characterization and functional analyses
    Christian NDong
    Departement des Sciences Biologiques, Universite du Quebec a Montreal, C P 8888 succursale Centre ville, Montreal, Quebec, Canada H3C 3P8
    Plant Physiol 129:1368-81. 2002
    ..consistent with the localization of WCS19 within the chloroplast stroma of wheat (Triticum aestivum) and rye (Secale cereale)...
  83. pmc A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS)
    Hana Simkova
    Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Sokolovska 6, CZ 77200 Olomouc, Czech Republic
    BMC Genomics 9:237. 2008
    Genomics of rye (Secale cereale L.) is impeded by its large nuclear genome (1C approximately 7,900 Mbp) with prevalence of DNA repeats (> 90%)...
  84. pmc DArT markers tightly linked with the Rfc1 gene controlling restoration of male fertility in the CMS-C system in cultivated rye (Secale cereale L.)
    Stefan Andrzej Stojałowski
    Department of Plant Genetics, Breeding and Biotechnology, West Pomeranian University of Technology, Szczecin, Poland
    J Appl Genet 52:313-8. 2011
    The Rfc1 gene controls restoration of male fertility in rye (Secale cereale L.) with sterility-inducing cytoplasm CMS-C...
  85. ncbi Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1
    Robert Kofler
    Department for Agrobiotechnology, Institute for Plant Production Biotechnology, University of Natural Resources and Applied Life Sciences, Konrad Lorenz Str 20, 3430 Tulln, Austria
    Theor Appl Genet 117:915-26. 2008
    ..This will allow to selectively design microsatellite markers for motifs likely to yield a high level of polymorphism...
  86. ncbi Physical analysis of the complex rye (Secale cereale L.) Alt4 aluminium (aluminum) tolerance locus using a whole-genome BAC library of rye cv. Blanco
    B J Shi
    Australian Centre for Plant Functional Genomics ACPFG, School of Agriculture, Food and Wine, University of Adelaide, PMB1, Glen Osmond, SA, 5064, Australia
    Theor Appl Genet 119:695-704. 2009
    ....
  87. ncbi Mapping of sequence-specific markers and loci controlling preharvest sprouting and alpha-amylase activity in rye (Secale cereale L.) on the genetic map of an F2 (S120&times;S76) population
    B Myskow
    Department of Plant Genetics, Breeding and Biotechnology, West Pomeranian University of Technology, Szczecin, Poland
    J Appl Genet 51:283-7. 2010
    ....
  88. ncbi A new rearrangement of angiosperm chloroplast DNA in rye (Secale cereale) involving translocation and duplication of the ribosomal rpS15 gene
    A Prombona
    Max Planck Institute für Molekulare Genetik, Abteilung Wittmann, Berlin, West, Federal Republic of Germany
    J Biol Chem 264:19060-5. 1989
    ..Northern blot analysis has shown that the rearranged rpS15 gene is actively transcribed in rye chloroplasts and etioplasts and that its transcription pattern is different from that recently reported for tobacco rpS15...
  89. ncbi Saturating rye genetic map with amplified fragment length polymorphism (AFLP) and random amplified polymorphic DNA (RAPD) markers
    Piotr T Bednarek
    Botasnical Garden CBDC PAS, Plant Molecular Taxonomy, Warsaw, Poland
    J Appl Genet 44:21-33. 2003
    ..9 cM, but in seven regions the closest markers are still more than 20 cM apart. A detailed description of the newly mapped AFLP and RAPD loci is presented. The relationship with other published rye maps is discussed...
  90. ncbi Malate metabolism and reactions of oxidoreduction in cold-hardened winter rye (Secale cereale L.) leaves
    Frauke Crecelius
    Botanisches Institut, Goethe Universitat, PO Box 111932, D 60054 Frankfurt am Main, Germany
    J Exp Bot 54:1075-83. 2003
    In cold-hardened leaves (CHL) of winter rye (Secale cereale L.) much higher levels of malate were detected by (13)C-NMR than in non-hardened leaves (NHL)...
  91. ncbi A new aluminum tolerance gene located on rye chromosome arm 7RS
    M Matos
    Departamento de Genetica, Facultad de Biologia, Universidad Complutense, Madrid, Spain
    Theor Appl Genet 111:360-9. 2005
    ..The segregation of Alt genes and several random amplified polymorphic DNA (RAPD), Secale cereale inter-microsatellite (SCIM), and Secale cereale microsatellite (SCM) markers in three F(2) between a tolerant ..
  92. ncbi Relationships between transcription, silver staining, and chromatin organization of nucleolar organizers in Secale cereale
    Ana D Caperta
    Centro Botânica Aplicada à Agricultura, Instituto Superior de Agronomia, Technical University of Lisbon, Lisboa
    Protoplasma 232:55-9. 2007
    ..evaluate the correlation between the epigenetic regulation of rRNA genes and NOR silver staining in the plant Secale cereale. Following 5-azacytidine treatment, we observed an increase in rRNA gene transcription as well as a reduction ..
  93. ncbi Establishment of introgression libraries in hybrid rye (Secale cereale L.) from an Iranian primitive accession as a new tool for rye breeding and genomics
    K C Falke
    State Plant Breeding Institute, Universitaet Hohenheim, 70593 Stuttgart, Germany
    Theor Appl Genet 117:641-52. 2008
    ..These introgression libraries can substantially foster rye breeding programs and provide a promising opportunity to proceed towards functional genomics...
  94. ncbi Antifungal activity of rye (Secale cereale) seed chitinases: the different binding manner of class I and class II chitinases to the fungal cell walls
    Toki Taira
    Department of Bioscience and Biotechnology, Faculty of Agriculture, Ryukyu University, Okinawa, Japan
    Biosci Biotechnol Biochem 66:970-7. 2002
    ..As a result, RSC-a inhibited fungal growth more effectively than RSC-c. Furthermore, it was suggested that the chitin-binding domain in RSC-a assists the antifungal action of RSC-a by binding to the fungal hypha...
  95. ncbi Postprandial glucose, insulin, and incretin responses to grain products in healthy subjects
    Katri S Juntunen
    Department of Clinical Nutrition, The University of Kuopio, Kuopio, Finland
    Am J Clin Nutr 75:254-62. 2002
    ..Various botanical and structural characteristics of starchy food modify the postprandial glucose and insulin responses in humans...
  96. ncbi Leaf-rust resistance in rye (Secale cereale L.). 1. Genetic analysis and mapping of resistance genes Pr1 and Pr2
    P Wehling
    Institute of Agricultural Crops, Federal Centre for Breeding Research on Cultivated Plants BAZ, Rudolf Schick Platz 3a, 18190 Gross Lüsewitz, Germany
    Theor Appl Genet 107:432-8. 2003
    ..A proposal is submitted for the designation of resistance genes to rye leaf rust which would avoid interference with existing gene-symboling in respect to wheat leaf-rust resistances introgressed from rye into wheat or triticale...
  97. ncbi Genome restructuring in rye affects the expression, organization and disposition of homologous rDNA loci
    Ana D Caperta
    Secção de Genética, Departamento de Botanica e Engenharia Biologica, Instituto Superior de Agronomia, Tapada da Ajuda, 1349 017 Lisboa, Portugal
    J Cell Sci 115:2839-46. 2002
    ..These results seem to indicate a 'sequence recognition' process for the regulation of homologous loci...
  98. ncbi Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies
    R K Varshney
    Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstrasse 3, 06466 Gatersleben, Germany
    Theor Appl Genet 114:1105-16. 2007
    ..This showed a broad equivalence with respect to genetic diversity between these different data types...
  99. ncbi Identification and chromosomal organization of two rye genome-specific RAPD products useful as introgression markers in wheat
    Jong Min Ko
    National Yeongnam Agricultural Experiment Station, Milyang, Korea
    Genome 45:157-64. 2002
    ....
  100. ncbi QTLs for resistance to preharvest sprouting in rye (Secale cereale L.)
    Piotr Masojć
    Department of Genetics and Plant Breeding, University of Agriculture in Szczecin, Slowackiego 17, 71 434 Szczecin, Poland
    J Appl Genet 48:211-7. 2007
    ..uas-7R.1 (recessive) and QPhs.uas-1R.1 (additive). Results of the present study suggest that introgression of 4-5 QTLs, identified in line Ot1-3, should substantially reduce sprouting risk in rye varieties...
  101. ncbi Dietary carbohydrate modification enhances insulin secretion in persons with the metabolic syndrome
    David E Laaksonen
    Department of Medicine, University of Kuopio, Kuopio, Finland
    Am J Clin Nutr 82:1218-27. 2005
    ..The metabolic syndrome markedly increases the risk of type 2 diabetes and cardiovascular disease, but the influence of dietary modification on insulin and glucose metabolism independent of weight loss is still poorly understood...