systematized nomenclature of medicine

Summary

Summary: Controlled vocabulary of clinical terms produced by the College of American Pathologists.

Top Publications

  1. ncbi Evaluation of the content coverage of SNOMED CT: ability of SNOMED clinical terms to represent clinical problem lists
    Peter L Elkin
    Division of General Internal Medicine, Mayo Clinic College of Medicine, 200 First St SW, Rochester, MN 55905 USA
    Mayo Clin Proc 81:741-8. 2006
  2. ncbi In defense of the Desiderata
    James J Cimino
    Department of Biomedical Informatic, Columbia University, New York, NY 10032, USA
    J Biomed Inform 39:299-306. 2006
  3. pmc Integration of tools for binding archetypes to SNOMED CT
    Erik Sundvall
    Department of Biomedical Engineering, Linkoping University, 581 85 Linkoping, Sweden
    BMC Med Inform Decis Mak 8:S7. 2008
  4. ncbi Codes, classifications, terminologies and nomenclatures: definition, development and application in practice
    Simon de Lusignan
    Primary Care Informatics, Department of Community Health Sciences, St George s Hospital Medical School, London, UK
    Inform Prim Care 13:65-70. 2005
  5. pmc Forty years of SNOMED: a literature review
    Ronald Cornet
    Department of Medical Informatics, Academic Medical Centre, Universiteit van Amsterdam, PO Box 22700, 1100 DE Amsterdam, The Netherlands
    BMC Med Inform Decis Mak 8:S2. 2008
  6. ncbi Measures of semantic similarity and relatedness in the biomedical domain
    Ted Pedersen
    Department of Computer Science, 1114 Kirby Drive, University of Minnesota, Duluth, MN 55812, USA
    J Biomed Inform 40:288-99. 2007
  7. pmc Development and evaluation of methods for structured recording of heart murmur findings using SNOMED-CT post-coordination
    Julie M Green
    Department of Biomedical Sciences, College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
    J Am Med Inform Assoc 13:321-33. 2006
  8. ncbi Will Systematized Nomenclature of Medicine-Clinical Terms improve our understanding of the disease burden posed by allergic disorders?
    C R Simpson
    Department of General Practice and Primary Care, Primary Care Clinical Informatics Unit, The University of Aberdeen, Scotland, UK
    Clin Exp Allergy 37:1586-93. 2007
  9. ncbi Systematized Nomenclature of Medicine-Clinical Terms direction and its implications on critical care
    Reza Shahpori
    Department of Critical Care Medicine, Alberta Health Services, Calgary, Alberta, Canada
    J Crit Care 25:364.e1-9. 2010
  10. ncbi Systematized nomenclature of medicine clinical terms (SNOMED CT) to represent computed tomography procedures
    Thuppahi Sisira De Silva
    Clinical Information Programs, Newfoundland and Labrador Centre for Health Information, 70 O Leary Avenue, St John s, NL, Canada
    Comput Methods Programs Biomed 101:324-9. 2011

Detail Information

Publications223 found, 100 shown here

  1. ncbi Evaluation of the content coverage of SNOMED CT: ability of SNOMED clinical terms to represent clinical problem lists
    Peter L Elkin
    Division of General Internal Medicine, Mayo Clinic College of Medicine, 200 First St SW, Rochester, MN 55905 USA
    Mayo Clin Proc 81:741-8. 2006
    To evaluate the ability of SNOMED CT (Systematized Nomenclature of Medicine Clinical Terms) version 1.0 to represent the most common problems seen at the Mayo Clinic in Rochester, Minn.
  2. ncbi In defense of the Desiderata
    James J Cimino
    Department of Biomedical Informatic, Columbia University, New York, NY 10032, USA
    J Biomed Inform 39:299-306. 2006
    ..To that end, additional Desiderata are defined that deal with the purpose, rather than the structure, of controlled medical terminologies...
  3. pmc Integration of tools for binding archetypes to SNOMED CT
    Erik Sundvall
    Department of Biomedical Engineering, Linkoping University, 581 85 Linkoping, Sweden
    BMC Med Inform Decis Mak 8:S7. 2008
    ..This paper presents an archetype editor with support for manual or semi-automatic creation of bindings between archetypes and terminology systems...
  4. ncbi Codes, classifications, terminologies and nomenclatures: definition, development and application in practice
    Simon de Lusignan
    Primary Care Informatics, Department of Community Health Sciences, St George s Hospital Medical School, London, UK
    Inform Prim Care 13:65-70. 2005
    ..The Working Group wishes to encourage shared definitions and an understanding of the practical application of structured data to improve quality in clinical practice...
  5. pmc Forty years of SNOMED: a literature review
    Ronald Cornet
    Department of Medical Informatics, Academic Medical Centre, Universiteit van Amsterdam, PO Box 22700, 1100 DE Amsterdam, The Netherlands
    BMC Med Inform Decis Mak 8:S2. 2008
    ..The aim of this paper is to investigate this by providing an overview of published studies in which a version of SNOMED was studied or applied...
  6. ncbi Measures of semantic similarity and relatedness in the biomedical domain
    Ted Pedersen
    Department of Computer Science, 1114 Kirby Drive, University of Minnesota, Duluth, MN 55812, USA
    J Biomed Inform 40:288-99. 2007
    ..We conclude that there is a role both for more flexible measures of relatedness based on information derived from corpora, as well as for measures that rely on existing ontological structures...
  7. pmc Development and evaluation of methods for structured recording of heart murmur findings using SNOMED-CT post-coordination
    Julie M Green
    Department of Biomedical Sciences, College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
    J Am Med Inform Assoc 13:321-33. 2006
    ..This study evaluated an existing SNOMED-CT model for structured recording of heart murmur findings and compared it to a concept-dependent attributes model using content from SNOMED-CT...
  8. ncbi Will Systematized Nomenclature of Medicine-Clinical Terms improve our understanding of the disease burden posed by allergic disorders?
    C R Simpson
    Department of General Practice and Primary Care, Primary Care Clinical Informatics Unit, The University of Aberdeen, Scotland, UK
    Clin Exp Allergy 37:1586-93. 2007
    ..Greater granularity of coding can be achieved by using the Systematized Nomenclature of Medicine-Clinical Terms (SNOMED-CT) system, which will be adopted by several countries including the United ..
  9. ncbi Systematized Nomenclature of Medicine-Clinical Terms direction and its implications on critical care
    Reza Shahpori
    Department of Critical Care Medicine, Alberta Health Services, Calgary, Alberta, Canada
    J Crit Care 25:364.e1-9. 2010
    The aim of this study was to describe the new advancements in Systematized Nomenclature of Medicine-Clinical Terms (SNOMED-CT) terminology and its applicability to critical care documentation.
  10. ncbi Systematized nomenclature of medicine clinical terms (SNOMED CT) to represent computed tomography procedures
    Thuppahi Sisira De Silva
    Clinical Information Programs, Newfoundland and Labrador Centre for Health Information, 70 O Leary Avenue, St John s, NL, Canada
    Comput Methods Programs Biomed 101:324-9. 2011
    To evaluate the ability of systematized nomenclature of medicine clinical terms (SNOMED CT) to represent computed tomography procedures in computed tomography dictionaries used in the Canadian province of Newfoundland and Labrador.
  11. pmc A model for evaluating interface terminologies
    S Trent Rosenbloom
    Department of Biomedical Informatics, Vanderbilt University, Nashville, TN, USA
    J Am Med Inform Assoc 15:65-76. 2008
    ..The authors present a model for evaluating functional utility of interface terminologies based on these intended uses...
  12. pmc A case report: using SNOMED CT for grouping Adverse Drug Reactions Terms
    Iulian Alecu
    Universite Paris Descartes, Faculte de Medecine, INSERM, U729, SPIM, Paris, 75006 France
    BMC Med Inform Decis Mak 8:S4. 2008
    ..This strategy is successful for grouping the WHO-ART terms present in most MedDRA SSCs. However the strategy failed when SSC were organized on other basis than taxonomy...
  13. ncbi The semantics of procedures and diseases in SNOMED CT
    S Schulz
    Department of Medical Informatics, Freiburg University, Germany
    Methods Inf Med 45:354-8. 2006
    ..In this article, we analyze a special encoding scheme for diseases and procedures in SNOMED CT, the so-called relationship groups (RGs), which had been devised to avoid ambiguities in definitions...
  14. pmc Integrating SNOMED CT into the UMLS: an exploration of different views of synonymy and quality of editing
    Kin Wah Fung
    National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20894, USA
    J Am Med Inform Assoc 12:486-94. 2005
    ..The aim of this study was to investigate the quality of human judgment of synonymy...
  15. ncbi From concepts to clinical reality: an essay on the benchmarking of biomedical terminologies
    Barry Smith
    Department of Philosophy and National Center for Biomedical Ontology, University at Buffalo, Buffalo, NY 14260, USA
    J Biomed Inform 39:288-98. 2006
    ..We conclude by outlining ways in which the framework thus defined might be exploited for purposes of diagnostic decision-support...
  16. pmc Heterogeneous but "standard" coding systems for adverse events: Issues in achieving interoperability between apples and oranges
    Rachel L Richesson
    University of South Florida College of Medicine, Tampa, FL, USA
    Contemp Clin Trials 29:635-45. 2008
    ..Three different data standards - the Medical Dictionary for Regulatory Activities (MedDRA) and the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) terminologies, and Common Terminology Criteria for Adverse Events (..
  17. ncbi Mapping of the WHO-ART terminology on Snomed CT to improve grouping of related adverse drug reactions
    Iulian Alecu
    INSERM U729, Universite Paris Descartes, Faculte de Medecine, Paris, France
    Stud Health Technol Inform 124:833-8. 2006
    ..We plan to improve our method in order to retrieve associative relations between WHO-ART terms...
  18. ncbi Interactive visualization and navigation of complex terminology systems, exemplified by SNOMED CT
    Erik Sundvall
    Department of Biomedical Engineering, Linkopings Universitet, Sweden
    Stud Health Technol Inform 124:851-6. 2006
    ....
  19. ncbi Coordinating SNOMED-CT and ICD-10
    Sue Bowman
    AHIMA, USA
    J AHIMA 76:60-1. 2005
  20. ncbi Evaluation of the content coverage of SNOMED CT representing ICNP seven-axis version 1 concepts
    H A Park
    College of Nursing, Seoul National University, 28 Yongon Dong, Chongno Gu, Seoul 110 799, South Korea
    Methods Inf Med 50:472-8. 2011
    The purpose of this study is to evaluate the ability of SNOMED CT (Systematized Nomenclature of Medicine Clinical Terms) to represent the concepts of the ICNP version 1--the seven-axis model.
  21. pmc A method for encoding clinical datasets with SNOMED CT
    Dennis H Lee
    School of Health Information Science, University of Victoria, Human and Social Development Building A202, Victoria, BC V8P 5C2, Canada
    BMC Med Inform Decis Mak 10:53. 2010
    ..This paper describes a heuristic method that can be used to encode clinical terms in SNOMED CT and an illustration of how it was applied to encode an existing palliative care dataset...
  22. ncbi Standard terminology helps advance EHR
    Michelle Dougherty
    J AHIMA 74:59-60. 2003
  23. ncbi Automated enhancement of description logic-defined terminologies to facilitate mapping to ICD9-CM
    P L Elkin
    Laboratory of BioMedical Informatics, Department of Internal Medicine, Mayo Medical School, Mayo Foundation, Baldwin 4B, Mayo Clinic, 200 First Street S W, Rochester, MN 55905 0002, USA
    J Biomed Inform 35:281-8. 2002
    ..We also provide an explicit representation of the implied semantics of ICD9-CM. This tabulation will be useful for other knowledge engineering efforts involving ICD9-CM...
  24. ncbi Implications of SNOMED CT versioning
    Dennis Lee
    School of Health Information Science, University of Victoria, BC, Canada
    Int J Med Inform 80:442-53. 2011
    To determine the changes each Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) release undergoes and the implications of those changes.
  25. ncbi CLICSIG report: issues around compositional terminologies, SNOMED-CT in particular
    Ian Herbert
    Inform Prim Care 15:193-7. 2007
  26. pmc Why do it the hard way? The case for an expressive description logic for SNOMED
    Alan L Rector
    University of Manchester, School of Computer Science, Manchester, UK
    J Am Med Inform Assoc 15:744-51. 2008
    ..The use of a more expressive language would bring major benefits including a uniform structure for context and negation. The result would be easier to use and would simplify developing software and formulating queries...
  27. ncbi Mapping OpenSDE domain models to SNOMED CT. Applied to the domain of cardiovascular disease
    Zhu Min
    Department of Medical Infomatics, Erasmus MC, Rotterdam, The Netherlands
    Methods Inf Med 45:4-9. 2006
    ..To explore the strengths and pitfalls of mapping structured EPR (electronic patient record) terms (OpenSDE) to SNOMED codes...
  28. ncbi Using SNOMED CT as a reference terminology to cross map two highly pre-coordinated classification systems
    Steven H Brown
    Department of Veterans Affairs, United States of America
    Stud Health Technol Inform 129:636-9. 2007
    ..001). We conclude that SNOMED CT can be a useful adjunct to direct mapping between administrative classifications...
  29. ncbi SNOMED-CT: The advanced terminology and coding system for eHealth
    Kevin Donnelly
    SNOMED International, College of American Pathologists, Northfield, Illinois, USA
    Stud Health Technol Inform 121:279-90. 2006
    ..For example, it will help reduce medication-prescribing errors, which are currently known to kill or injure many citizens. It will also reduce clinical administration effort and the overall costs of healthcare...
  30. ncbi Coding of thoughts, words and things
    Madonna Kemp
    National Centre for Classification in Health, School of Public Health, Queensland University of Technology, Victoria Park Road, Kelvin Grove, QLD 4059, Australia
    HIM J 34:54-6. 2005
    ..Also examined is the effect that a person's background and past experience has on their understanding and interpretation of clinical terms and how this results in inconsistent "world views"...
  31. ncbi Thompson challenges healthcare industry at first NHII conference
    Dan Rode
    J AHIMA 74:14, 16-7. 2003
  32. ncbi Information technology. Help is on the way
    Gina Rollins
    Hosp Health Netw 77:24-5. 2003
  33. doi The American Academy of Ophthalmology adopts SNOMED CT as its official clinical terminology
    H Dunbar Hoskins
    Ophthalmology 115:225-6. 2008
  34. ncbi Inter-patient distance metrics using SNOMED CT defining relationships
    Genevieve B Melton
    Department of Surgery, The Johns Hopkins Medical Institutions, Baltimore, MD, USA
    J Biomed Inform 39:697-705. 2006
    ..Ontology and information content principles may be potentially helpful tools for similarity metric development...
  35. ncbi Introduction of enhancement technologies into the intensive care service, Royal Prince Alfred Hospital, Sydney
    Angela Ryan
    Intensive Care Service, Royal Prince Alfred Hospital, Camperdown, NSW 2050, Australia
    HIM J 37:40-5. 2008
    ..Both systems went live in October 2007, and this report summarises the background, purpose, and progress thus far...
  36. ncbi A scale-free network view of the UMLS to learn terminology translations
    Chintan O Patel
    Department of Biomedical Informatics, Columbia University, New York, NY, USA
    Stud Health Technol Inform 129:689-93. 2007
    ..A hub-driven traversal strategy provides a promising approach to generate high quality cross-terminology translations from the UMLS...
  37. ncbi Using SNOMED CT codes for coding information in electronic health records for stroke patients
    Judith van der Kooij
    Acquest, Koudekerk aan den Rijn, The Netherlands
    Stud Health Technol Inform 124:815-23. 2006
    ..Partly this is due to the fact that SNOMED CT has the option to request unique codes for new concepts, and is currently working on scale representation...
  38. ncbi Structured documentation
    Daniel J Zinder
    Medical Corps, United States Navy, 22nd Street North, Arlington, VA 22205, USA
    Otolaryngol Clin North Am 35:1211-21. 2002
    ..Understanding the basic principles of structured documentation and defining the use of the structured data within a practice allows an organization to select a tool that most closely fits its needs...
  39. ncbi A practical approach to advanced terminology services in health information systems
    Maria Laura Gambarte
    Medical Informatics Department, Hospital Italiano of Buenos Aires, Argentina
    Stud Health Technol Inform 129:621-5. 2007
    ..Clinical data entered at any place of the institution and level of care, is represented uniformly through the whole health information system...
  40. ncbi Practical issues in using SNOMED CT as a reference terminology
    Senthil K Nachimuthu
    Department of Biomedical Informatics, University of Utah, Salt Lake City, Utah, USA
    Stud Health Technol Inform 129:640-4. 2007
    ....
  41. ncbi Creation and evaluation of a terminology server for the interactive coding of discharge summaries
    Hernan Navas
    Department of Medical Informatics, Hospital Italiano de Buenos Aires, Argentina
    Stud Health Technol Inform 129:650-4. 2007
    ..The new system had good acceptance from the users who ranked it high using QUIS (Questionnaire for User Interaction Satisfaction) and the auto codification rate improved from 61.5% to 88.39%...
  42. ncbi Health care terminology for the electronic era
    Robert J G Chalmers
    Mayo Clin Proc 81:729-31. 2006
  43. ncbi Semantic issues in integrating data from different models to achieve data interoperability
    Rahil Qamar
    Medical Informatics Group, University of Manchester, Manchester, UK
    Stud Health Technol Inform 129:674-8. 2007
    ..However, the paper also stresses that the context and semantics of the data in either model should be taken into consideration at all times to increase the chances of true positives and reduce the occurrence of false negatives...
  44. ncbi A formal representation for messages containing compositional expressions
    Peter L Elkin
    Mayo Clinic, Baldwin 4B, 200 First Street Southwest, Rochester, MN 55905, USA
    Int J Med Inform 71:89-102. 2003
    ..In addition, we advocate transmitting the upward transitive closure of subsumption of all concepts, to improve comparability of data and to decrease reliance on locally stored versions of the underlying reference terminology...
  45. ncbi An evaluation of the usefulness of two terminology models for integrating nursing diagnosis concepts into SNOMED Clinical Terms
    S Bakken
    Department of Medical Informatics, School of Nursing, Columbia University, 630 West 168th Street, Mailbox 6, New York, NY, USA
    Int J Med Inform 68:71-7. 2002
    ..We evaluated the usefulness of two models for integrating nursing diagnosis concepts into SNOMED Clinical Terms (CT)...
  46. pmc Investigating subsumption in SNOMED CT: an exploration into large description logic-based biomedical terminologies
    Olivier Bodenreider
    U S National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
    Artif Intell Med 39:183-95. 2007
    ..The objective of this paper is to study the degree to which one DL-based biomedical terminology (SNOMED CT) does indeed comply with such principles...
  47. ncbi Data sharing on the horizon
    Lynn Wagner
    Provider 30:20-4, 26-7, 30-1 passim. 2004
  48. ncbi A version management system for SNOMED CT
    Josef Ingenerf
    Institute of Medical Informatics, University of Luebeck, Luebeck, Germany
    Stud Health Technol Inform 136:827-32. 2008
    ..Several functions for qualitative and quantitative comparisons of subtrees of interest are extended by accessing external software systems...
  49. ncbi Managing care pathways combining SNOMED CT, archetypes and an electronic guideline system
    Knut Bernstein
    MEDIQ Medical Informatics and Quality Management, Denmark
    Stud Health Technol Inform 136:353-8. 2008
    ..The proposal also includes the use of a National Patient Index for storing data about the patient's position in the pathway and for sharing this information by all involved parties...
  50. ncbi The benefits of using SNOMED CT and LOINC in assessment instruments
    Rita A Scichilone
    J AHIMA 79:56-7. 2008
  51. ncbi Redundancy in a computer-generated order list: meeting the needs of nurses at various levels of practice expertise
    Lorrie K Roemer
    University of Utah College of Nursing, Medical Informatics, Intermountain Health Care, University of Utah, Salt Lake City, UT 84120, USA
    Comput Inform Nurs 23:73-82; quiz 83-4. 2005
    ..Orders were then grouped by related system or function for readability. It is possible to automate the removal of duplicate and overlapping orders from an order list before display to the nurse...
  52. ncbi Representation of disorders of the newborn infant by SNOMED CT
    Andrew G James
    Department of Paediatrics, University of Toronto, Toronto, Ontario, Canada
    Stud Health Technol Inform 136:833-8. 2008
    ..Nearly 50% of these SNOMED CT concepts have one or more synonyms. SNOMED CT provides structured representation for the majority of this set of terms that are used for disorders of the newborn infant...
  53. pmc Automating terminological networks to link heterogeneous biomedical databases
    Xiaoyan Wang
    Department of Biomedical Informatics, College of Physicians and Surgeons, Columbia University, 622 W 168th Street VC5, New York, NY 10032, USA
    Stud Health Technol Inform 107:555-9. 2004
    ..Taken together, our conclusion may suggest the combined manual and automated terminology networks could offer recall and precision in an incremental manner..
  54. pmc A controlled trial of automated classification of negation from clinical notes
    Peter L Elkin
    Department of Medicine, Mayo Foundation, Rochester, MN, USA
    BMC Med Inform Decis Mak 5:13. 2005
    ..Also to perform a failure analysis to identify the causes of poorly identified negation (i.e. Missed Conceptual Representation, Inaccurate Conceptual Representation, Missed Negation, Inaccurate identification of Negation)...
  55. ncbi The promise of ICD-10-CM
    Linda Kloss
    American Health Information Management Association, Chicago, USA
    Health Manag Technol 26:48, 47. 2005
  56. ncbi Using a terminology server and consumer search phrases to help patients find physicians with particular expertise
    Curtis L Cole
    Weill Medical College of Cornell University, 1300 York Avenue A123, New York, NY 10021, USA
    Stud Health Technol Inform 107:492-6. 2004
    ..To design and implement a real world application using a terminology server to assist patients and physicians who use common language search terms to find specialist physicians with a particular clinical expertise...
  57. ncbi Kaiser Permanente's Convergent Medical Terminology
    Robert H Dolin
    Kaiser Permanente CMT Team, Kaiser Permanente HealthConnect, 5 Centerpointe Drive, La Palma, CA 90623, USA
    Stud Health Technol Inform 107:346-50. 2004
    ..KP has learned to exploit that terminology in ways that are clinician-acceptable and that provide powerful options for data analysis and reporting...
  58. ncbi Biosurveillance evaluation of SNOMED CT's terminology (BEST Trial): coverage of chief complaints
    Peter L Elkin
    Mayo Clinic College of Medicine, Rochester, Minnesota, USA
    Stud Health Technol Inform 136:797-802. 2008
    ....
  59. ncbi Desiderata for domain reference ontologies in biomedicine
    Anita Burgun
    EA 3888, Faculte de Medecine, IFR 140, Universite de Rennes I, France
    J Biomed Inform 39:307-13. 2006
    ..We suggest five desirable characteristics for reference ontologies: good lexical coverage, good coverage in terms of relations, compatibility with standards, modularity, and ability to represent variation in reality...
  60. ncbi Strategies for referent tracking in electronic health records
    Werner Ceusters
    European Centre for Ontological Research, Univerisität des Saarlandes, Postfach 151150, D 66041 Saarbrucken, Germany
    J Biomed Inform 39:362-78. 2006
    ....
  61. ncbi Design principles of DOLCE-based formal representation of ICD10
    Gergely Héja
    National Institute for Strategic Health Research, Budapest, Hungary
    Stud Health Technol Inform 136:821-6. 2008
    ..The ontology is represented in OWL 1.0 in a modularised way. The transformation of the previous GALEN-based representation to the same conceptual system is also under way...
  62. ncbi Detailed clinical models for sharable, executable guidelines
    Craig G Parker
    Intermountain Health Care, 4646 W Lake Park Boulevard, Salt Lake City, UT 84120, USA
    Stud Health Technol Inform 107:145-8. 2004
    ..In addition, common detailed clinical models are needed to give precise semantics and to make the task of mapping between models manageable. We discuss the experience of the SAGE project related to detailed clinical models...
  63. ncbi Medical informatics standards applicable to emergency department information systems: making sense of the jumble
    Kevin M Coonan
    University of Utah School of Medicine, 30 North Medical Dr, Room AB193, Salt Lake City UT 84132, USA
    Acad Emerg Med 11:1198-205. 2004
    ..of the National Library of Medicine have made the patient medical record information standards (Systematized Nomenclature of Medicine [SNOMED], Logical Observation Identifiers, Names, and Codes [LOINC], RxNorm) easily accessible...
  64. ncbi Adequacy of evolving national standardized terminologies for interdisciplinary coded concepts in an automated clinical pathway
    Patricia C Dykes
    Columbia University, 630 West 168th Street, New York, NY 10032, USA
    J Biomed Inform 36:313-25. 2003
    ....
  65. ncbi Representation of ophthalmology concepts by electronic systems: adequacy of controlled medical terminologies
    Michael F Chiang
    Department of Ophthalmology, Columbia University College of Physicians and Surgeons, New York, New York 10032, USA
    Ophthalmology 112:175-83. 2005
    ..of Diseases 9, Clinical Modification [ICD9-CM]; Current Procedural Terminology 4 [CPT-4]; Systematized Nomenclature of Medicine, Clinical Terms [SNOMED-CT]; Logical Identifiers, Names, and Codes [LOINC]; Medical Entities ..
  66. pmc Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience
    Jyotishman Pathak
    Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota 55905, USA
    J Am Med Inform Assoc 18:376-86. 2011
    ....
  67. ncbi Electronic laboratory reporting for the infectious diseases physician and clinical microbiologist
    Rebecca Wurtz
    Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA
    Clin Infect Dis 40:1638-43. 2005
    ..Over the next 5-10 years, almost all CDR will move to the internet...
  68. ncbi Development of a prototype personal digital assistant-decision support system for the management of adult obesity
    Nam Ju Lee
    Columbia University School of Nursing, 617 W 168th Street, New York, NY 10032, USA
    Int J Med Inform 76:S281-92. 2007
    ..The purpose of this study was to develop a prototype personal digital assistant-decision support system (PDA-DSS) based on a clinical practice guideline (CPG) for the management of obesity...
  69. pmc COST Action "EuroTelepath": digital pathology integration in electronic health record, including primary care centres
    Marcial Garcia Rojo
    Pathology Department, Hospital General de Ciudad Real, Ciudad Real, Spain
    Diagn Pathol 6:S6. 2011
    ..Fostering use of medical informatics standards and adapting them to current needs is needed to manage efficiently extremely large medical images, like digital slide files...
  70. pmc Unusual presentation of anaplastic large cell lymphoma with clinical course mimicking fever of unknown origin and sepsis: autopsy study of five cases
    Marina B Mosunjac
    Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Room CG 42, Atlanta, GA 30303, USA
    Croat Med J 49:660-8. 2008
    ..To describe a subset of cases with the unusual clinical and histomorphological presentation of anaplastic large cell lymphoma (ALCL) mimicking fever of unknown origin (FUO) and sepsis...
  71. ncbi Unified medical language system coverage of emergency-medicine chief complaints
    Debbie A Travers
    School of Nursing, University of North Carolina, Chapel Hill, NC, USA
    Acad Emerg Med 13:1319-23. 2006
    ..There is no widely used ED CC vocabulary, but experts have suggested evaluation of existing health-care vocabularies for ED CC...
  72. ncbi Primary leiomyosarcoma of the pancreas: study of 9 cases and review of literature
    Hongying Zhang
    Department of Pathology, West China Hospital, Sichuan University, Chengdu, Sichuan, China
    Am J Surg Pathol 34:1849-56. 2010
    ..English-language medical literature reports 29 cases as single cases or small series. A systematized nomenclature of medicine (SNOMED) search of Mayo Clinic surgical pathology files from 1994 to 2006 identified 22 primary ..
  73. ncbi Bridging radiology and public health: the emerging field of radiologic public health informatics
    Daniel J Mollura
    Russell H Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, USA
    J Am Coll Radiol 5:174-81. 2008
    ..The backbone for this integration is through informatics projects such as Systematized Nomenclature of Medicine Clinical Terms and RadLex constructing terminology libraries and ontologies, as well as algorithms ..
  74. ncbi Frequency of benign and preinvasive breast diseases
    Fadwa J Altaf
    Department of Pathology, Faculty of Medicine, King Khalid National Guard Hospital, Jeddah, Kingdom of Saudi Arabia
    Saudi Med J 25:493-7. 2004
    ....
  75. pmc PCCR: Pancreatic Cancer Collaborative Registry
    Simon Sherman
    Eppley Institute for Research in Cancer, University of Nebraska Medical Center, Omaha, NE, USA
    Cancer Inform 10:83-91. 2011
    ..The PCCR controlled vocabulary is harmonized with the NCI Thesaurus (NCIt) or Systematized Nomenclature of Medicine-Clinical Terms (SNOMED-CT)...
  76. pmc Tumor taxonomy for the developmental lineage classification of neoplasms
    Jules J Berman
    Cancer Diagnosis Program, National Cancer Institute, Bethesda, USA
    BMC Cancer 4:88. 2004
    ..A taxonomy is a list of the instances that populate a classification. The taxonomy of neoplasia attempts to list every known term for every known tumor of man...
  77. ncbi Patient safety incidents involving neuromuscular blockade: analysis of the UK National Reporting and Learning System data from 2006 to 2008
    J Arnot-Smith
    Royal Bolton Hospital Foundation Trust, Bolton, UK
    Anaesthesia 65:1106-13. 2010
    ..We make recommendations to reduce human error in the use of neuromuscular blocking agents and on future incident reporting in anaesthesia...
  78. pmc Assisting the translation of SNOMED CT into French using UMLS and four representative French-language terminologies
    Michel Joubert
    LERTIM, Faculty of Medicine, University of Aix Marseille II, Marseille, France
    AMIA Annu Symp Proc 2009:291-5. 2009
    ..In this way, we measured the number of SNOMED CT concepts to be found in French-language terminologies...
  79. ncbi Developing a national emergency department data reference set based on SNOMED CT
    David P Hansen
    Australian E Health Research Centre, CSIRO ICT Centre, Brisbane, QLD, Australia
    Med J Aust 194:S8-10. 2011
    ..The National E-Health Transition Authority is introducing a standard clinical terminology, the Systematized Nomenclature of Medicine--Clinical Terms (SNOMED CT), as one of the building blocks of an e-health infrastructure in ..
  80. ncbi Are posttraumatic stress disorder mental health terms found in SNOMED-CT medical terminology
    Brett Trusko
    Center for Biomedical Informatics, Mt Sinai School of Medicine, New York, NY, USA
    J Trauma Stress 23:794-801. 2010
    The authors sought to evaluate how well the Systematized Nomenclature of Medicine-Clinical Terms (SNOMED-CT) controlled vocabulary represents terms commonly used clinically when documenting posttraumatic stress disorder (PTSD)...
  81. pmc Implementing description-logic rules for SNOMED-CT attributes through a table-driven approach
    Prakash M Nadkarni
    Center for Health Research, Geisinger Health Systems, Danville, Pennsylvania 17821, USA
    J Am Med Inform Assoc 17:182-4. 2010
    ..This approach, which is tailored to database implementations, is computationally efficient and allows new attribute-definition rules to be created as data while needing minimal or no code modification...
  82. pmc Looking for Anemia (and Other Disorders) in SNOMED CT: Comparison of Three Approaches and Practical Implications
    Fleur Mougin
    LESIM, INSERM U897, ISPED, University Victor Segalen Bordeaux 2, France
    AMIA Annu Symp Proc 2010:527-31. 2010
    ..Finally, we draw practical implications from our findings for SNOMED CT users and developers...
  83. pmc LexGrid: a framework for representing, storing, and querying biomedical terminologies from simple to sublime
    Jyotishman Pathak
    Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 1 Street SW, Rochester, MN 55905, USA
    J Am Med Inform Assoc 16:305-15. 2009
    ..resources such as the NCI Thesaurus (NCIT), International Classification of Diseases (ICD), Systematized Nomenclature of Medicine (SNOMED), Current Procedural Terminology (CPT), and Gene Ontology (GO) have been developed and ..
  84. ncbi An ontology-based measure to compute semantic similarity in biomedicine
    Montserrat Batet
    Intelligent Technologies for Advanced Knowledge Acquisition Research Group, Departament d Enginyeria Informàtica i Matemàtiques, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain
    J Biomed Inform 44:118-25. 2011
    ..The correlation between the results of the evaluated measures and the human experts' ratings shows that our proposal outperforms most of the previous measures avoiding, at the same time, some of their limitations...
  85. ncbi Nomenclature for congenital and paediatric cardiac disease: historical perspectives and The International Pediatric and Congenital Cardiac Code
    Rodney C G Franklin
    Paediatric Cardiology Directorate, Royal Brompton and Harefield NHS Trust, Harefield, Middlesex, United Kingdom
    Cardiol Young 18:70-80. 2008
    ..the International Health Terminology Standards Development Organisation, who are the owners of the Systematized Nomenclature of Medicine or "SNOMED"...
  86. ncbi Intelligent clinical decision support systems based on SNOMED CT
    Ewelina Ciolko
    Faculty of Health Science, University of Ontario Institute of Technology 2000 Simcoe Street North, Oshawa, Canada
    Conf Proc IEEE Eng Med Biol Soc 2010:6781-4. 2010
    ..Through a high level comparison of many AI methods it is found that a TAN-Bayesian method could be the most suitable to apply to SNOMED CT data...
  87. ncbi SNOMED-encoded surgical pathology databases: a tool for epidemiologic investigation
    J J Berman
    Department of Pathology, Baltimore Veterans Administration Medical Center, MD 21201 1524, USA
    Mod Pathol 9:944-50. 1996
    ..The original intent of the Systematized Nomenclature of Medicine (SNOMED) was to prepare population-based disease data from pathology reports, but no such studies ..
  88. ncbi [Intelligent telemedicine in intensive care units. Bed-side operation of medical technology devices and IT in intensive care medicine]
    R Rohrig
    Universitätsklinikum Giessen und Marburg GmbH Standort Giessen, Giessen, BRD
    Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz 52:279-86. 2009
    ....
  89. ncbi Biomedical vocabularies--the demand for differentiation
    Josef Ingenerf
    Institute of Medical Informatics, University of Lubeck, Germany
    Stud Health Technol Inform 129:610-5. 2007
    ..As a side-effect, this paper may contribute to the meta-terminology in this field of medical terminology...
  90. ncbi Harmonizing clinical terminologies: driving interoperability in healthcare
    Russell A Hamm
    Mayo Clinic, Division of Biomedical Informatics, USA
    Stud Health Technol Inform 129:660-3. 2007
    ..In this paper, we propose a combination of methods and standards that target the harmonization of clinical terminologies and encourage sustainable, interoperable infrastructure for healthcare...
  91. ncbi Views of diagnosis distribution in primary care in 2.5 million encounters in Stockholm: a comparison between ICD-10 and SNOMED CT
    Anna Vikström
    Department of Neurobiology, Care Sciences and Society, Center for Family and Community Medicine, Karolinska Institutet, Huddinge, Sweden
    Inform Prim Care 18:17-29. 2010
    ..A poly-hierarchical system supports the representation and aggregation of healthcare data on the basis of specific medical aspects and various levels of clinical detail...
  92. pmc Throw the bath water out, keep the baby: keeping medically-relevant terms for text mining
    Jay Jarman
    James A Haley VAMC, Tampa, FL
    AMIA Annu Symp Proc 2010:336-40. 2010
    ..Logistic regression models were built from the results, with the extracted concept model performing slightly better than the complete note model...
  93. ncbi Visualization of disease distribution with SNOMED CT and ICD-10
    Mikael Nyström
    Department of Biomedical Engineering, Linkoping University, Sweden
    Stud Health Technol Inform 160:1100-3. 2010
    ..Implications of the proposed method for enriching a traditional classification such as ICD-10 through mappings to SNOMED CT are discussed...
  94. pmc A Survey of Direct Users and Uses of SNOMED CT: 2010 Status
    Gai Elhanan
    New Jersey Institute of Technology NJIT, Newark, NJ
    AMIA Annu Symp Proc 2010:207-11. 2010
    ..Most users are satisfied with the level of content coverage. The results indicate that SNOMED CT has a solid footing in production systems, and that SCT is mostly used for concept searches and clinical coding...
  95. pmc Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting
    Olivier Bodenreider
    National Library of Medicine, Bethesda, Maryland, USA
    AMIA Annu Symp Proc 2009:45-9. 2009
    ..To investigate the feasibility of using SNOMED CT as an entry point for coding adverse drug reactions and map them automatically to MedDRA for reporting purposes and interoperability with legacy repositories...
  96. ncbi Using SNOMED CT to identify a crossmap between two classification systems: a comparison with an expert-based and a data-driven strategy
    Ferishta Bakhshi-Raiez
    Department of Medical Informatics, Academic Medical Center, Universiteit van Amsterdam, The Netherlands
    Stud Health Technol Inform 160:1035-9. 2010
    ..Differences in the crossmap results had however no significant influence on the health care outcomes. SNOMED CT can be used as an intermediary to solve the problem of crossmapping between versions of classification systems...
  97. ncbi Mapping ICNP Version 1 concepts to SNOMED CT
    Hyeoun Ae Park
    College of Nursing, Seoul National University, Seoul, Korea
    Stud Health Technol Inform 160:1109-13. 2010
    ..Improvements in ICNP Version 1 in terms of concept naming and definition, and adding missing concepts to the SNOMED CT would lead to greater coverage of the ICNP Version 1 concepts...
  98. ncbi Addressing SNOMED CT implementation challenges through multi-disciplinary collaboration
    Justin Liu
    Health Informatics Research, University Health Network, Toronto ON, Canada
    Stud Health Technol Inform 160:981-5. 2010
    ....
  99. ncbi Semantic features of an enterprise interface terminology for SNOMED RT
    J R Campbell
    Department of Internal Medicine, University of Nebraska Medical Center, Nebraska Health Systems Omaha, NE 68198 3331, USA
    Stud Health Technol Inform 84:82-5. 2001
    ..To evaluate the utility of SNOMED RT in support of a natural language interface for encoding of clinical assessments...
  100. ncbi Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT
    Duo Wei
    New Jersey Institute of Technology, Newark, NJ, USA
    Stud Health Technol Inform 160:1070-4. 2010
    ..Case study; Two examples of errors are presented in detail (one missing IS-A relation and one duplicate concept). After correction, SNOMED CT is reclassified to ensure that no new inconsistency was introduced...
  101. ncbi Familial risks for nonmedullary thyroid cancer
    Kari Hemminki
    Division of Molecular Genetic Epidemiology, German Cancer Research Center, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany
    J Clin Endocrinol Metab 90:5747-53. 2005
    ..Reliable data on familial risks are important for clinical counseling and cancer genetics...

Research Grants26

  1. Methods for generalized ontology terms enrichment analysis
    Nigam Shah; Fiscal Year: 2013
    ....
  2. Enhancing the Biomedical Computing Platform for Pancreatic Cancer Research
    Simon Sherman; Fiscal Year: 2013
    ..with terms from the Cancer Data Standards Repository (caDSR), the NCI Thesaurus (NCIT), and the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT)...
  3. Continued Development and Evaluation of caTIES
    Rebecca S Crowley; Fiscal Year: 2013
    ..This project is important because it will greatly increase the access of researchers to important data and materials while maintaining patient privacy. ..
  4. Ontology-enhanced Information Retrieval to Improve Clinical Practice
    JAMES ASHLEY MCCART; Fiscal Year: 2013
    ..The IR systems will be evaluated using measures derived from precision and recall. The exact Wilcoxon Signed Rank test, a non-parameteric test, will be used to examine all-pair combinations of IR systems for each performance measure. ..
  5. Taxonomies Supporting Orientation, Navigation and Auditing of Terminologies
    Yehoshua Perl; Fiscal Year: 2010
    ..Examples include SNOMED CT (the Systematized Nomenclature of Medicine - Clinical Terms), the National Cancer Institute Thesaurus (NCIT), Kaiser's Convergent ..
  6. Testing Evaluation Metrics for Interface Terminologies
    SAMUEL ROSENBLOOM; Fiscal Year: 2007
    ..Through this mentored study period, the Principal Investigator will develop research skills and experience to achieve the goal of becoming an independent researcher. ..
  7. Disease Ontology: An Open Biomedical Ontology for Disease
    LYNN MARIE SCHRIML; Fiscal Year: 2010
    ..The DO project will also validate mappings to standard terminologies containing disease concepts such as UMLS, SNOMED-CT and ICD-9-CM. ..
  8. Evidence-based Diagnostic Tools for Translational and Clinical Research (eTfor2)
    Randolph A Miller; Fiscal Year: 2012
    ..The eTfor2 resources should improve the quality and cross-institutional validity of EMR-based translational and clinical studies. ..
  9. Extracting Semantic Knowledge from Clinical Reports
    PATRICK JAMIESON; Fiscal Year: 2009
    ..The methods enabled the creation of two new prototype applications - a SNOMED CT (Systematized Nomenclature of Medicine--Clinical Terms) coding service called SnomedCoder, and a text mining tool for analyzing a large ..
  10. Realism-based versioning for biomedical ontologies
    Werner Ceusters; Fiscal Year: 2009
    ..project will test this hypothesis by applying this novel approach to ontology versioning to the Systematized Nomenclature of Medicine (SNOMED) according to the following plan: ...
  11. Semantic Model of SNOMED as a Bayesian Network
    Kurt Zimmerman; Fiscal Year: 2003
    ..This study will evaluate the semantic network used by the Systematized Nomenclature of Medicine (SNOMED) for use as a KB in a Bayesian DSS to classify rodent liver disorders using clinical ..
  12. DELIVERY OF THE CGN INFORMATION RESOURCE DATABASE
    Prakash Nadkarni; Fiscal Year: 2006
    ..Informatics assistance will be provided to the individual nodes to assist the task of data exchange, and when necessary, to assist the design of local data collection systems. ..
  13. A Framework Based Clinical Documentation Evaluation Method
    SAMUEL T ROSENBLOOM; Fiscal Year: 2010
    ..The proposed project will transition the PI from his current National Library of Medicine supported period of career development to an independent informatics investigator. ..
  14. DESIGN AND IMPLEMENTATION OF PHARMACOGENETIC DATABASE
    Prakash Nadkarni; Fiscal Year: 2002
    ..Informatics assistance will be provided to the individual nodes to assist the task of data exchange, and when necessary, to assist the design of local data collection systems. ..
  15. ROBUST QUERY OF HETEROGENEOUS CLINICAL DATABASES
    Prakash Nadkarni; Fiscal Year: 2002
    ..In particular, research will be performed on utilization of newer database technologies, such as new indexing methods, as well as parallel database implementations. ..
  16. IMMUNOGENIC TUMOR ASSOCIATED MUCIN PEPTIDES
    Simon Sherman; Fiscal Year: 2004
    ....
  17. Biomedical Computing Tools for Pancreatic Cancer Res.
    Simon Sherman; Fiscal Year: 2007
    ..The IBCT to be developed in this project can also be used as an infrastructural foundation for research of other types of cancer and chronic diseases. [unreadable] [unreadable]..
  18. Controlled Vocabulary Design for Clinical Applications
    Peter Elkin; Fiscal Year: 2004
    ..g., implementation of guidelines), education of future clinicians (e.g., information acquisition techniques) and research (e.g., outcomes research) toward the evidence-based practice of medicine. ..
  19. SYSTEMATIC COMBINATION OF ANATOMY AND NOMENCLATURE
    Jonathan Silverstein; Fiscal Year: 2004
    ....
  20. Biosurveillance Utilizing SNOMED-CT Based Natural Language Processing
    Peter Elkin; Fiscal Year: 2007
    ..The fruits of this research will assist our national initiatives to pave the way toward a safe and effective BioSecure biosurveillance solution. ..
  21. LATENT SEMANTIC INDEXING IN SUPPORT OF DATA RETRIEVAL
    CHRISTOPHER CHUTE; Fiscal Year: 2001
    ..We commit these activities to remain compliant with emerging standards for medical concept representation arising from the Canon efforts and the standardization processes at ANSI-HISPP, CEN TC251 and the CPRI initiatives. ..
  22. Intelligent Data Storage Resource
    CHRISTOPHER CHUTE; Fiscal Year: 2005
    ..Centralizing such access to a secure data warehouse ensures our continued commitment to patient confidentiality and compliance with federal and state regulations. ..
  23. Development and Evaluation of Terminology Services
    CHRISTOPHER CHUTE; Fiscal Year: 2004
    ....
  24. Epidemiology and Incidence of Barrett's Esophagus
    DOUGLAS ALLEN CORLEY; Fiscal Year: 2010
    ..The proposed study explores how hormones associated with body fat may change the way the body heals after an injury, and increase the risk of cells developing precancerous changes. ..
  25. Telemedical Diagnosis of Retinopathy of Prematurity
    Michael Chiang; Fiscal Year: 2007
    ..Columbia University has a strong existing framework in medical information systems, telemedicine, and public health, which will be leveraged to complete this training and research program successfully. ..
  26. Mediated Integration of Neuroscience Resources
    Luis Marenco; Fiscal Year: 2008
    ..abstract_text> ..