user computer interface

Summary

Summary: The portion of an interactive computer program that issues messages to and receives commands from a user.

Top Publications

  1. pmc InterProScan: protein domains identifier
    E Quevillon
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:W116-20. 2005
  2. pmc TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
    V Matys
    BIOBASE GmbH, Halchtersche Strasse 33, D 38304 Wolfenbuttel, Germany
    Nucleic Acids Res 34:D108-10. 2006
  3. ncbi Haploview: analysis and visualization of LD and haplotype maps
    J C Barrett
    Whitehead Institute for Biomedical Research Cambridge, MA 02142, USA
    Bioinformatics 21:263-5. 2005
  4. pmc miRBase: microRNA sequences, targets and gene nomenclature
    Sam Griffiths-Jones
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Nucleic Acids Res 34:D140-4. 2006
  5. ncbi TM4: a free, open-source system for microarray data management and analysis
    A I Saeed
    Institute for Genomic Research, Rockville, MD, USA
    Biotechniques 34:374-8. 2003
  6. pmc GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    Elizabeth I Boyle
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Bioinformatics 20:3710-5. 2004
  7. ncbi COPASI--a COmplex PAthway SImulator
    Stefan Hoops
    Virginia Bioinformatics Institute, Virginia Tech, Washington St 0477, Blacksburg, VA 24061, USA
    Bioinformatics 22:3067-74. 2006
  8. pmc The UCSC Table Browser data retrieval tool
    Donna Karolchik
    Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, School of Engineering, 1156 High Street, Santa Cruz, CA 95064 1077, USA
    Nucleic Acids Res 32:D493-6. 2004
  9. pmc Mfold web server for nucleic acid folding and hybridization prediction
    Michael Zuker
    Department of Mathematical Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
    Nucleic Acids Res 31:3406-15. 2003
  10. ncbi affy--analysis of Affymetrix GeneChip data at the probe level
    Laurent Gautier
    Center for Biological Sequence Analysis CBS, Technical University of Denmark, Building 208, 2800 Lyngby, Denmark
    Bioinformatics 20:307-15. 2004

Research Grants

  1. BCI2000: SOFTWARE FOR BRAIN-COMPUTER INTERFACE RESEARCH
    Gerwin Schalk; Fiscal Year: 2009
  2. Mediated Integration of Neuroscience Resources
    Luis Marenco; Fiscal Year: 2008
  3. Interoperation of Genome Databases and Tools
    Kei Hoi Cheung; Fiscal Year: 2005
  4. Annual Conference on Computational Genomics
    Carol Bult; Fiscal Year: 2008
  5. Cognitive Orthosis with Interactive Task and Planning
    Edmund Lopresti; Fiscal Year: 2004
  6. Genome Sequence Analysis: Theory and Practice
    Carol Bult; Fiscal Year: 2006
  7. A Framework Based Clinical Documentation Evaluation Method
    SAMUEL T ROSENBLOOM; Fiscal Year: 2010
  8. Navigation Assistant for a Wheeled Walker
    Edmund Lopresti; Fiscal Year: 2005
  9. Collaborative Study:Workplace Musculoskeletal Disorders
    David Rempel; Fiscal Year: 2006
  10. Smart Wheelchair Component System
    Edmund Lopresti; Fiscal Year: 2007

Detail Information

Publications370 found, 100 shown here

  1. pmc InterProScan: protein domains identifier
    E Quevillon
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:W116-20. 2005
    ..O'Reilly Publishers, Sebastopol, CA, http://www.w3.org/TR/soap/] are also available to the users. Various output formats are supported and include text tables, XML documents, as well as various graphs to help interpret the results...
  2. pmc TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
    V Matys
    BIOBASE GmbH, Halchtersche Strasse 33, D 38304 Wolfenbuttel, Germany
    Nucleic Acids Res 34:D108-10. 2006
    ..The here described public releases, TRANSFAC 7.0 and TRANSCompel 7.0, are accessible under http://www.gene-regulation.com/pub/databases.html...
  3. ncbi Haploview: analysis and visualization of LD and haplotype maps
    J C Barrett
    Whitehead Institute for Biomedical Research Cambridge, MA 02142, USA
    Bioinformatics 21:263-5. 2005
    ..Haploview is a software package that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface...
  4. pmc miRBase: microRNA sequences, targets and gene nomenclature
    Sam Griffiths-Jones
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Nucleic Acids Res 34:D140-4. 2006
    ..miRBase Sequences is the primary online repository for miRNA sequence data and annotation. miRBase Targets is a comprehensive new database of predicted miRNA target genes. miRBase is available at http://microrna.sanger.ac.uk/...
  5. ncbi TM4: a free, open-source system for microarray data management and analysis
    A I Saeed
    Institute for Genomic Research, Rockville, MD, USA
    Biotechniques 34:374-8. 2003
  6. pmc GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    Elizabeth I Boyle
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Bioinformatics 20:3710-5. 2004
    ..GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script...
  7. ncbi COPASI--a COmplex PAthway SImulator
    Stefan Hoops
    Virginia Bioinformatics Institute, Virginia Tech, Washington St 0477, Blacksburg, VA 24061, USA
    Bioinformatics 22:3067-74. 2006
    ..Therefore, there is a big need for software tools that allow access to diverse simulation and modeling methods as well as support for the usage of these methods...
  8. pmc The UCSC Table Browser data retrieval tool
    Donna Karolchik
    Center for Biomolecular Science and Engineering, University of California Santa Cruz UCSC, School of Engineering, 1156 High Street, Santa Cruz, CA 95064 1077, USA
    Nucleic Acids Res 32:D493-6. 2004
    ..The Table Browser User's Guide located on the UCSC website provides instructions and detailed examples for constructing queries and configuring output...
  9. pmc Mfold web server for nucleic acid folding and hybridization prediction
    Michael Zuker
    Department of Mathematical Sciences, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
    Nucleic Acids Res 31:3406-15. 2003
    ..The portal for the mfold web server is http://www.bioinfo.rpi.edu/applications/mfold. This URL will be referred to as 'MFOLDROOT'...
  10. ncbi affy--analysis of Affymetrix GeneChip data at the probe level
    Laurent Gautier
    Center for Biological Sequence Analysis CBS, Technical University of Denmark, Building 208, 2800 Lyngby, Denmark
    Bioinformatics 20:307-15. 2004
    ..The processing of the Affymetrix GeneChip data has been a recent focus for data analysts. Alternatives to the original procedure have been proposed and some of these new methods are widely used...
  11. ncbi Brain-computer interfaces for communication and control
    Jonathan R Wolpaw
    Laboratory of Nervous System Disorders, Wadsworth Center, New York State Department of Health, P O Box 509, Empire State Plaza, Albany, NY 12201 0509, USA
    Clin Neurophysiol 113:767-91. 2002
    ....
  12. ncbi Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
    Ivica Letunic
    EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany
    Bioinformatics 23:127-8. 2007
    ..Various types of data such as genome sizes or protein domain repertoires can be mapped onto the tree. Export to several bitmap and vector graphics formats is supported. AVAILABILITY: iTOL is available at http://itol.embl.de..
  13. pmc STRING 8--a global view on proteins and their functional interactions in 630 organisms
    Lars J Jensen
    European Molecular Biology Laboratory, Heidelberg, Germany
    Nucleic Acids Res 37:D412-6. 2009
    ..Version 8.0 of STRING covers about 2.5 million proteins from 630 organisms, providing the most comprehensive view on protein-protein interactions currently available. STRING can be reached at http://string-db.org/...
  14. pmc MEME: discovering and analyzing DNA and protein sequence motifs
    Timothy L Bailey
    Institute of Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia
    Nucleic Acids Res 34:W369-73. 2006
    ..This article describes the freely accessible web server and its architecture, and discusses ways to use MEME effectively to find new sequence patterns in biological sequences and analyze their significance...
  15. pmc BioGRID: a general repository for interaction datasets
    Chris Stark
    Ontario Cancer Institute, Princess Margaret Hospital, 610 University Avenue, Toronto, Ontario, Canada M5G 2M9
    Nucleic Acids Res 34:D535-9. 2006
    ..User-customized graphs with embedded protein, gene and interaction attributes can be constructed with a visualization system called Osprey that is dynamically linked to the BioGRID...
  16. pmc WebGestalt: an integrated system for exploring gene sets in various biological contexts
    Bing Zhang
    Graduate School in Genome Science and Technology, University of Tennessee Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    Nucleic Acids Res 33:W741-8. 2005
    ..Exploration of all the 48 gene sets using WebGestalt is available for the public at http://genereg.ornl.gov/webgestalt/wg_enrich.php...
  17. pmc BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities
    Tiqing Liu
    Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, 9600 Gudelsky Drive, Rockville, MD 20850, USA
    Nucleic Acids Res 35:D198-201. 2007
    ..The data in BindingDB are linked both to structural data in the PDB via PDB IDs and chemical and sequence searches, and to the literature in PubMed via PubMed IDs...
  18. ncbi ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information
    Fabian Glaser
    The George S Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel
    Bioinformatics 19:163-4. 2003
    ..We present a new web server, ConSurf, which automates these algorithmic tools. ConSurf may be used for high-throughput characterization of functional regions in proteins...
  19. ncbi CLANS: a Java application for visualizing protein families based on pairwise similarity
    Tancred Frickey
    Max Planck Institut fuer Entwicklungsbiologie, Spemannstrasse 35, 72076 Tuebingen, Germany
    Bioinformatics 20:3702-4. 2004
    ..AVAILABILITY: CLANS can be downloaded at http://protevo.eb.tuebingen.mpg.de/download...
  20. pmc The Arabidopsis Information Resource (TAIR): gene structure and function annotation
    David Swarbreck
    Carnegie Institution, Department of Plant Biology, 260 Panama St, Stanford, CA 94305, USA
    Nucleic Acids Res 36:D1009-14. 2008
    ..A total of 681 new genes and 1002 new splice variants were added. Overall, 10,098 loci (one-third of all loci from the previous TAIR6 release) were updated for the TAIR7 release...
  21. pmc SWISS-MODEL: An automated protein homology-modeling server
    Torsten Schwede
    Biozentrum der Universitat Basel, Klingelbergstr 50 70, CH 4056 Basel, Switzerland
    Nucleic Acids Res 31:3381-5. 2003
    ..The reliability of SWISS-MODEL is continuously evaluated in the EVA-CM project. The SWISS-MODEL server is under constant development to improve the successful implementation of expert knowledge into an easy-to-use server...
  22. pmc Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    Ada Hamosh
    Nucleic Acids Res 33:D514-7. 2005
    ..OMIM is an easy and straightforward portal to the burgeoning information in human genetics...
  23. pmc DrugBank: a knowledgebase for drugs, drug actions and drug targets
    David S Wishart
    Department of Computing Science, University of Alberta, Edmonton, AB, Canada T6G 2E8
    Nucleic Acids Res 36:D901-6. 2008
    ..DrugBank has also significantly improved the power and simplicity of its structure query and text query searches. DrugBank is available at http://www.drugbank.ca...
  24. pmc The RAST Server: rapid annotations using subsystems technology
    Ramy K Aziz
    Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA
    BMC Genomics 9:75. 2008
    ..The number of prokaryotic genome sequences becoming available is growing steadily and is growing faster than our ability to accurately annotate them...
  25. pmc SMART 6: recent updates and new developments
    Ivica Letunic
    EMBL, Meyerhofstrasse 1, 69012 Heidelberg, Germany
    Nucleic Acids Res 37:D229-32. 2009
    ..In addition to the standard web access to the database, users can now query SMART using distributed annotation system (DAS) or through a simple object access protocol (SOAP) based web service...
  26. ncbi Circular genome visualization and exploration using CGView
    Paul Stothard
    Department of Biological Sciences and Computing Science, University of Alberta Edmonton, Alberta, Canada T6G 2E8
    Bioinformatics 21:537-9. 2005
    ..AVAILABILITY: CGView (the standalone application, library or applet), sample input, sample maps and documentation can be obtained from http://wishart.biology.ualberta.ca/cgview/ CONTACT: david.wishart@ualberta.ca...
  27. pmc SIFT: Predicting amino acid changes that affect protein function
    Pauline C Ng
    Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N A1 162, Seattle, WA 98109, USA
    Nucleic Acids Res 31:3812-4. 2003
    ..We have shown that SIFT can distinguish between functionally neutral and deleterious amino acid changes in mutagenesis studies and on human polymorphisms. SIFT is available at http://blocks.fhcrc.org/sift/SIFT.html...
  28. pmc MATCH: A tool for searching transcription factor binding sites in DNA sequences
    A E Kel
    BIOBASE GmbH, Halchtersche Str 33, D 38304 Wolfenbuttel, Germany
    Nucleic Acids Res 31:3576-9. 2003
    ..com/pub/programs.html#match. The same program with a different web interface can be found at http://compel.bionet.nsc.ru/Match/Match.html. An advanced version of the tool called Match Professional is available at http://www.biobase.de...
  29. pmc Protein structure prediction and analysis using the Robetta server
    David E Kim
    Structural Genomics of Pathogenic Protozoa, Department of Biochemistry, University of Washington, Seattle WA 98195, USA
    Nucleic Acids Res 32:W526-31. 2004
    ..The Rosetta protein design and protein-protein docking methodologies will soon be available through the server as well...
  30. pmc ExPASy: The proteomics server for in-depth protein knowledge and analysis
    Elisabeth Gasteiger
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:3784-8. 2003
    ..ExPASy started to operate in 1993, as the first WWW server in the field of life sciences. In addition to the main site in Switzerland, seven mirror sites in different continents currently serve the user community...
  31. ncbi ACT: the Artemis Comparison Tool
    Tim J Carver
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
    Bioinformatics 21:3422-3. 2005
    ..ACT is part of the Artemis distribution and is similarly open source, written in Java and can run on any Java enabled platform, including UNIX, Macintosh and Windows...
  32. pmc ESEfinder: A web resource to identify exonic splicing enhancers
    Luca Cartegni
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 31:3568-71. 2003
    ....
  33. pmc AUGUSTUS: a web server for gene finding in eukaryotes
    Mario Stanke
    University of Gottingen, Institut fur Mikrobiologie und Genetik, Goldschmidtstrasse 1, 37077 Gottingen, Germany
    Nucleic Acids Res 32:W309-12. 2004
    ..The advantage of our program becomes apparent especially for larger input sequences containing more than one gene. The server is available at http://augustus.gobics.de...
  34. pmc OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
    Feng Chen
    Department of Chemistry, Center for Bioinformatics, Penn Genomics Institute, University of Pennsylvania, Philadelphia, PA 19104 6018, USA
    Nucleic Acids Res 34:D363-8. 2006
    ..OrthoMCL-DB provides a centralized warehouse for orthology prediction among multiple species, and will be updated and expanded as additional genome sequence data become available...
  35. ncbi Neuronal ensemble control of prosthetic devices by a human with tetraplegia
    Leigh R Hochberg
    Department of Neurology, Massachusetts General Hospital, Brigham and Women s Hospital, and Spaulding Rehabilitation Hospital, Harvard Medical School, 55 Fruit Street, Boston, Massachusetts 02114, USA
    Nature 442:164-71. 2006
    ..These early results suggest that NMPs based upon intracortical neuronal ensemble spiking activity could provide a valuable new neurotechnology to restore independence for humans with paralysis...
  36. ncbi BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    Steven Maere
    Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology VIB, Ghent University, Technologiepark 927, B 9052, Ghent, Belgium
    Bioinformatics 21:3448-9. 2005
    ....
  37. pmc JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
    Jan Christian Bryne
    Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thormøhlensgate 55, N 5008 Bergen, Norway
    Nucleic Acids Res 36:D102-6. 2008
    ..JASPAR is available at http://jaspar.genereg.net...
  38. ncbi affylmGUI: a graphical user interface for linear modeling of single channel microarray data
    James M Wettenhall
    Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville 3050, Australia
    Bioinformatics 22:897-9. 2006
    ..Output of the analysis (tables and figures) can be exported to an HTML report. The GUI provides user-friendly access to state-of-the-art methods embodied in the Bioconductor software repository...
  39. pmc GeneTrail--advanced gene set enrichment analysis
    Christina Backes
    Center for Bioinformatics, Saarland University, Building E1 1, 66041 Saarbrucken, Germany
    Nucleic Acids Res 35:W186-92. 2007
    ..GeneTrail is freely accessible at http://genetrail.bioinf.uni-sb.de...
  40. pmc ProteoWizard: open source software for rapid proteomics tools development
    Darren Kessner
    Spielberg Family Center for Applied Proteomics, Cedars Sinai Medical Center, USA
    Bioinformatics 24:2534-6. 2008
    ..In addition to the library, we also introduce a rapidly growing set of companion tools whose implementation helps to illustrate the simplicity of developing applications on top of the ProteoWizard library...
  41. pmc The HHpred interactive server for protein homology detection and structure prediction
    Johannes Söding
    Department of Protein Evolution, Max Planck Institute for Developmental Biology Spemannstrasse 35, 72076 Tubingen, Germany
    Nucleic Acids Res 33:W244-8. 2005
    ..A detailed help facility is available. As a demonstration, we analyze the sequence of SpoVT, a transcriptional regulator from Bacillus subtilis. HHpred can be accessed at http://protevo.eb.tuebingen.mpg.de/hhpred...
  42. pmc NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    Kim D Pruitt
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Rm 6An 12J, 45 Center Drive, Bethesda, MD 20892 6510, USA
    Nucleic Acids Res 33:D501-4. 2005
    ....
  43. ncbi Ligand Depot: a data warehouse for ligands bound to macromolecules
    Zukang Feng
    Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854, USA
    Bioinformatics 20:2153-5. 2004
    ..rutgers.edu/. Version 1.0 supports multiple operating systems including Windows, Unix, Linux and the Macintosh operating system. The current drawing tool works in Internet Explorer, Netscape and Mozilla on Windows, Unix and Linux...
  44. ncbi Java Treeview--extensible visualization of microarray data
    Alok J Saldanha
    Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA
    Bioinformatics 20:3246-8. 2004
    ..An applet version is also available that can be used on any website with no special server-side setup...
  45. pmc Reactome: a knowledgebase of biological pathways
    G Joshi-Tope
    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
    Nucleic Acids Res 33:D428-32. 2005
    ..The database is publicly available under open source terms, which allows both its content and its software infrastructure to be freely used and redistributed...
  46. pmc CD-Search: protein domain annotations on the fly
    Aron Marchler-Bauer
    Computational Biology Branch, NCBI, National Library of Medicine, NIH, Building 38A, Room 5S508, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 32:W327-31. 2004
    ..CD-Search can be accessed at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi...
  47. pmc ClusPro: a fully automated algorithm for protein-protein docking
    Stephen R Comeau
    Bioinformatics Graduate Program, Boston University, 44 Cummington Street, Boston, MA 02215, USA
    Nucleic Acids Res 32:W96-9. 2004
    ..The program output is a short list of putative complexes ranked according to their clustering properties, which is automatically sent back to the user via email...
  48. pmc APD: the Antimicrobial Peptide Database
    Zhe Wang
    Eppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, 986805 Nebraska Medical Center, Omaha, NE 68198 6805, USA
    Nucleic Acids Res 32:D590-2. 2004
    ..APD is a useful tool for studying the structure-function relationship of antimicrobial peptides. The database can be accessed via a web-based browser at the URL: http://aps.unmc.edu/AP/main.html...
  49. ncbi Open source system for analyzing, validating, and storing protein identification data
    Robertson Craig
    Beavis Informatics Ltd, and Manitoba Center for Proteomics, Winnipeg, Manitoba, Canada
    J Proteome Res 3:1234-42. 2004
    ..The components of the system have been made available as open source development projects. A publicly available system has been established, comprised of a group of data analysis servers and one main database server...
  50. ncbi A Chado case study: an ontology-based modular schema for representing genome-associated biological information
    Christopher J Mungall
    Lawrence Berkeley National Laboratory, Lawrence Berkeley National Lab, Mail Stop 64R0121, Berkeley, CA 94720, USA
    Bioinformatics 23:i337-46. 2007
    ..Our question was whether we could create a relational database schema that would be successfully reused...
  51. pmc SUBA: the Arabidopsis Subcellular Database
    Joshua L Heazlewood
    ARC Centre of Excellence in Plant Energy Biology, School of Biomedical, Biomolecular and Chemical Sciences, The University of Western Australia 35 Stirling Highway, Crawley 6009, Western Australia, Australia
    Nucleic Acids Res 35:D213-8. 2007
    ..The SUBA database provides a powerful means by which to assess protein subcellular localisation in Arabidopsis (http://www.suba.bcs.uwa.edu.au)...
  52. pmc PlantGDB: a resource for comparative plant genomics
    Jon Duvick
    Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA
    Nucleic Acids Res 36:D959-65. 2008
    ..PlantGDB also hosts a plant genomics research outreach portal (PGROP) that facilitates access to a large number of resources for research and training...
  53. pmc FireDock: a web server for fast interaction refinement in molecular docking
    Efrat Mashiach
    School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
    Nucleic Acids Res 36:W229-32. 2008
    ..We provide an option for using this protocol by automatic redirection of PatchDock candidate solutions to the FireDock web server for refinement. The FireDock web server is available at http://bioinfo3d.cs.tau.ac.il/FireDock/...
  54. pmc BASys: a web server for automated bacterial genome annotation
    Gary H Van Domselaar
    Department of Biological Sciences and Computing Science, University of Alberta, Edmonton, AB, T6G 2E8, Canada
    Nucleic Acids Res 33:W455-9. 2005
    ..The BASys server and databases can also be downloaded and run locally. BASys is accessible at http://wishart.biology.ualberta.ca/basys...
  55. pmc The PredictProtein server
    Burkhard Rost
    CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA
    Nucleic Acids Res 32:W321-6. 2004
    ..For all services, users can submit their query either by electronic mail or interactively via the World Wide Web...
  56. pmc NCBI BLAST: a better web interface
    Mark Johnson
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA
    Nucleic Acids Res 36:W5-9. 2008
    ..Here, we describe the BLAST web application's new features, explain design decisions and outline plans for future improvement...
  57. pmc The PeptideAtlas project
    Frank Desiere
    Institute for Systems Biology, Seattle, WA, USA
    Nucleic Acids Res 34:D655-8. 2006
    ..Here we present a summary of our process and details about the Human, Drosophila and Yeast PeptideAtlas builds...
  58. pmc GRAMM-X public web server for protein-protein docking
    Andrey Tovchigrechko
    Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA
    Nucleic Acids Res 34:W310-4. 2006
    ..Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track...
  59. ncbi IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments
    Chiara Romualdi
    Department of Biology, University of Padua, 35131 Padua, Italy
    Physiol Genomics 12:159-62. 2003
    ..Software is freely available at the site: http://telethon.bio.unipd.it/bioinfo/IDEG6_form/, together with additional information on statistical methodologies...
  60. pmc I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
    Emidio Capriotti
    Laboratory of Biocomputing, CIRB Department of Biology, University of Bologna via Irnerio 42, 40126 Bologna, Italy
    Nucleic Acids Res 33:W306-10. 2005
    ..0 as a unique and valuable helper for protein design, even when the protein structure is not yet known with atomic resolution. Availability: http://gpcr.biocomp.unibo.it/cgi/predictors/I-Mutant2.0/I-Mutant2.0.cgi...
  61. pmc Control of a two-dimensional movement signal by a noninvasive brain-computer interface in humans
    Jonathan R Wolpaw
    Laboratory of Nervous System Disorders, Wadsworth Center, New York State Department of Health and State University of New York, Albany, NY 12201 0509, USA
    Proc Natl Acad Sci U S A 101:17849-54. 2004
    ..The results suggest that people with severe motor disabilities could use brain signals to operate a robotic arm or a neuroprosthesis without needing to have electrodes implanted in their brains...
  62. ncbi FlyBase : a database for the Drosophila research community
    Rachel Drysdale
    Department of Genetics, University of Cambridge, Cambridge, UK
    Methods Mol Biol 420:45-59. 2008
    ..This review will introduce the FlyBase web server and query tools...
  63. ncbi limmaGUI: a graphical user interface for linear modeling of microarray data
    James M Wettenhall
    Division of Genetics and Bioinformatics, Walter and Eliza Hall Institute of Medical Research, 1G Royal Pde, Parkville, 3050, Australia
    Bioinformatics 20:3705-6. 2004
    ..limmaGUI is available for most platforms on the which R runs including Windows, Mac and most flavors of Unix...
  64. ncbi The UCSC Known Genes
    Fan Hsu
    Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz Santa Cruz, CA 95064, USA
    Bioinformatics 22:1036-46. 2006
    ..Although UCSC Known Genes offers the highest genomic and CDS coverage among major human and mouse gene sets, more detailed analysis suggests all of them could be further improved...
  65. pmc From genomics to chemical genomics: new developments in KEGG
    Minoru Kanehisa
    Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611 0011, Japan
    Nucleic Acids Res 34:D354-7. 2006
    ..Additionally, drug information is now stored separately and linked to new KEGG DRUG structure maps...
  66. pmc HMDB: the Human Metabolome Database
    David S Wishart
    Department of Computing Science, University of Alberta, Edmonton, AB, Canada T6G 2E8
    Nucleic Acids Res 35:D521-6. 2007
    ..The HMDB is designed to address the broad needs of biochemists, clinical chemists, physicians, medical geneticists, nutritionists and members of the metabolomics community. The HMDB is available at: www.hmdb.ca...
  67. pmc SuperPose: a simple server for sophisticated structural superposition
    Rajarshi Maiti
    Departments of Biological Sciences and Computing Science, University of Alberta, Edmonton, AB, T6G 2E8, Canada
    Nucleic Acids Res 32:W590-4. 2004
    ..The SuperPose web server is freely accessible at http://wishart.biology.ualberta.ca/SuperPose/...
  68. pmc The Universal Protein Resource (UniProt)
    Amos Bairoch
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 33:D154-9. 2005
    ..The UniProt databases can be accessed online (http://www.uniprot.org) or downloaded in several formats (ftp://ftp.uniprot.org/pub). New releases are published every two weeks...
  69. pmc ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement
    Karsten Suhre
    Information Génomique and Structurale UPR CNRS 2589, 31, Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France
    Nucleic Acids Res 32:W610-4. 2004
    ..The web server can be freely accessed at http://igs-server.cnrs-mrs.fr/elnemo/index.html...
  70. pmc Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools
    Paul D Thomas
    Evolutionary Systems Biology Group, SRI International 333 Ravenswood Ave, Menlo Park CA 94025, USA
    Nucleic Acids Res 34:W645-50. 2006
    ..All three web services are available at http://www.pantherdb.org/tools...
  71. pmc SITEHOUND-web: a server for ligand binding site identification in protein structures
    Marylens Hernandez
    Department of Structural and Chemical Biology, Mount Sinai School of Medicine, New York, NY 10029, USA
    Nucleic Acids Res 37:W413-6. 2009
    ..Various downloadable data files are also provided for offline data analysis...
  72. pmc PatchDock and SymmDock: servers for rigid and symmetric docking
    Dina Schneidman-Duhovny
    School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel
    Nucleic Acids Res 33:W363-7. 2005
    ..The services are available at http://bioinfo3d.cs.tau.ac.il. The methods behind the servers are very efficient, allowing large-scale docking experiments...
  73. ncbi Virtual environments for motor rehabilitation: review
    Maureen K Holden
    Department of Brain and Cognitive Sciences, McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
    Cyberpsychol Behav 8:187-211; discussion 212-9. 2005
    ....
  74. pmc The MAPPER database: a multi-genome catalog of putative transcription factor binding sites
    Voichita D Marinescu
    Children s Hospital Informatics Program, Children s Hospital Boston, Harvard Medical School, Enders Research Building EN 150 9, 300 Longwood Avenue, Boston, MA 02115, USA
    Nucleic Acids Res 33:D91-7. 2005
    ..Alternatively, the interface allows the user to retrieve binding sites for a single transcription factor of interest in a single gene or in all genes of the human, mouse or fruit fly genomes...
  75. pmc JCat: a novel tool to adapt codon usage of a target gene to its potential expression host
    Andreas Grote
    Institut fur Mikrobiologie, Spielmannstrasse 7, Technische Universitat Braunschweig, D 38106 Braunschweig, Germany
    Nucleic Acids Res 33:W526-31. 2005
    ..JCat is integrated into the PRODORIC database that hosts all required information on the various organisms to fulfill the requested calculations. JCat is freely accessible at http://www.prodoric.de/JCat...
  76. ncbi TOPP--the OpenMS proteomics pipeline
    Oliver Kohlbacher
    Simulation of Biological Systems, Eberhard Karls University Tübingen Sand 14, 72076 Tubingen, Germany
    Bioinformatics 23:e191-7. 2007
    ..In order to facilitate these studies, it would be desirable to have a flexible 'toolbox' of versatile and user-friendly applications allowing for rapid construction of computational workflows in proteomics...
  77. ncbi Optimal spatial filtering of single trial EEG during imagined hand movement
    H Ramoser
    Department of Medical Informatics, Institute of Biomedical Engineering, Graz University of Technology, Austria
    IEEE Trans Rehabil Eng 8:441-6. 2000
    ..The method performs a weighting of the electrodes according to their importance for the classification task. The high recognition rates and computational simplicity make it a promising method for an EEG-based brain-computer interface...
  78. ncbi DRTF: a database of rice transcription factors
    Ge Gao
    Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People s Republic of China
    Bioinformatics 22:1286-7. 2006
    ..The database can be browsed and searched with a user-friendly web interface. AVAILABILITY: DRTF is available at http://drtf.cbi.pku.edu.cn..
  79. pmc cisRED: a database system for genome-scale computational discovery of regulatory elements
    G Robertson
    Canada s Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, Canada
    Nucleic Acids Res 34:D68-73. 2006
    ..The database offers information on atomic motifs, motif groups and patterns. It is web-accessible, and can be queried directly, downloaded or installed locally...
  80. pmc SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence
    C Z Cai
    Department of Computational Science, National University of Singapore, Blk SOC1, Level 7, 3 Science Drive 2, Singapore 117543, Singapore
    Nucleic Acids Res 31:3692-7. 2003
    ..SVMProt can be accessed at http://jing.cz3.nus.edu.sg/cgi-bin/svmprot.cgi...
  81. pmc NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes
    T Z DeSantis
    Lawrence Berkeley National Laboratory, Center for Environmental Biotechnology, Berkeley, CA, USA
    Nucleic Acids Res 34:W394-9. 2006
    ..The ability to align and categorize large sequence sets using a simple interface has enabled researchers with various experience levels to obtain bacterial and archaeal community profiles...
  82. ncbi Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome
    J Zhang
    The Centre for Applied Genomics and the Program in Genetics and Genomic Biology, The Hospital for Sick Children, Toronto, Ontario, Canada
    Cytogenet Genome Res 115:205-14. 2006
    ....
  83. pmc ChEBI: a database and ontology for chemical entities of biological interest
    Kirill Degtyarenko
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D344-50. 2008
    ..ChEBI includes an ontological classification, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. ChEBI is available online at http://www.ebi.ac.uk/chebi/..
  84. pmc LIPID MAPS online tools for lipid research
    Eoin Fahy
    LIPID MAPS Bioinformatics Core, San Diego Supercomputer Center, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92037, USA
    Nucleic Acids Res 35:W606-12. 2007
    ..The MS prediction tools are available for three categories of lipids: (i) mono/di/triacylglycerols, (ii) glycerophospholipids and (iii) cardiolipins. The LIPID MAPS online tools are publicly available at www.lipidmaps.org/tools/...
  85. pmc Codon usage tabulated from international DNA sequence databases: status for the year 2000
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 28:292. 2000
    ..These new tools will provide users with the ability to further analyze for variations in codon usage among different genomes...
  86. ncbi Online predicted human interaction database
    Kevin R Brown
    Division of Cancer Informatics, Ontario Cancer Institute, University of Toronto, Canada
    Bioinformatics 21:2076-82. 2005
    ....
  87. pmc KEGG for linking genomes to life and the environment
    Minoru Kanehisa
    Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan
    Nucleic Acids Res 36:D480-4. 2008
    ..KEGG DRUG contains all approved drugs in the US and Japan, and KEGG DISEASE is a new database linking disease genes, pathways, drugs and diagnostic markers...
  88. pmc Defining participant exposure measures in Web-based health behavior change programs
    Brian G Danaher
    Oregon Research Institute, 1715 Franklin Blvd, Eugene, OR 97403, USA
    J Med Internet Res 8:e15. 2006
    ....
  89. pmc MPIDB: the microbial protein interaction database
    Johannes Goll
    The J Craig Venter Institute, Rockville, MD 20850, USA
    Bioinformatics 24:1743-4. 2008
    ..In contrast to these databases, interactions in MPIDB are further supported by 8150 additional evidences based on interaction conservation, co-purification and 3D domain contacts (iPfam, 3did)...
  90. ncbi Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis
    Claire L Wilson
    Paterson Institute for Cancer Research, Manchester M20 4BX, UK
    Bioinformatics 21:3683-5. 2005
    ..Simpleaffy also offers fast implementations of popular algorithms for generating expression summaries and detection calls...
  91. pmc The TIGR Rice Genome Annotation Resource: improvements and new features
    Shu Ouyang
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Nucleic Acids Res 35:D883-7. 2007
    ..Enhanced data access is available through web interfaces, FTP downloads and a Data Extractor tool developed in order to support discrete dataset downloads...
  92. pmc The UCSC Genome Browser Database: update 2006
    A S Hinrichs
    Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz UCSC, Santa Cruz, CA 95064, USA
    Nucleic Acids Res 34:D590-8. 2006
    ..These tools are highly integrated and provide many hyperlinks to other databases and websites. The GBD, browsing tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/...
  93. ncbi The non-invasive Berlin Brain-Computer Interface: fast acquisition of effective performance in untrained subjects
    Benjamin Blankertz
    Fraunhofer FIRST IDA, Kekulestr 7, 12 489 Berlin, Germany
    Neuroimage 37:539-50. 2007
    ....
  94. pmc DrugBank: a comprehensive resource for in silico drug discovery and exploration
    David S Wishart
    Department of Computing Science, University of Alberta, Edmonton, AB, Canada T6G 2E8
    Nucleic Acids Res 34:D668-72. 2006
    ..DrugBank is available at http://redpoll.pharmacy.ualberta.ca/drugbank/...
  95. pmc ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
    ..Several output modes are available including simple text views and a rich mode providing an interactive match and feature viewer with a graphical representation of results...
  96. pmc BioPortal: ontologies and integrated data resources at the click of a mouse
    Natalya F Noy
    Stanford Center for Biomedical Informatics Research, Stanford University
    Nucleic Acids Res 37:W170-3. 2009
    ..Thus, BioPortal not only provides investigators, clinicians, and developers 'one-stop shopping' to programmatically access biomedical ontologies, but also provides support to integrate data from a variety of biomedical resources...
  97. pmc MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes
    Ian W Davis
    Department of Biochemistry, Duke University, Durham, NC 27710 3711, USA
    Nucleic Acids Res 32:W615-9. 2004
    ..This service is available free to all users at http://kinemage.biochem.duke.edu...
  98. pmc SNPs3D: candidate gene and SNP selection for association studies
    Peng Yue
    Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, Rockville, MD 20850, USA
    BMC Bioinformatics 7:166. 2006
    ..We describe a web resource and database that provides and integrates as much information as possible on disease/gene relationships at the molecular level...
  99. ncbi A high-performance brain-computer interface
    Gopal Santhanam
    Department of Electrical Engineering, Stanford University, 330 Serra Mall, 319 Paul G Allen Center for Integrated Systems Annex, Stanford, California 94305 4075, USA
    Nature 442:195-8. 2006
    ..These performance results and their implications for system design should substantially increase the clinical viability of BCIs in humans...
  100. pmc SuperTarget and Matador: resources for exploring drug-target relationships
    Stefan Günther
    Structural Bioinformatics Group, Institute of Molecular Biology and Bioinformatics, Charite University Medicine Berlin, Arnimallee 22, 14195 Berlin, Germany
    Nucleic Acids Res 36:D919-22. 2008
    ..SuperTarget and Matador are available at http://insilico.charite.de/supertarget and http://matador.embl.de...
  101. pmc JBrowse: a next-generation genome browser
    Mitchell E Skinner
    Department of Bioengineering, University of California at Berkeley, Berkeley, California 94720, USA
    Genome Res 19:1630-8. 2009
    ....

Research Grants74

  1. BCI2000: SOFTWARE FOR BRAIN-COMPUTER INTERFACE RESEARCH
    Gerwin Schalk; Fiscal Year: 2009
    ..This project will greatly facilitate this development by improving and maintaining general-purpose BCI software and continuing to provide it to BCI research groups throughout the world. ..
  2. Mediated Integration of Neuroscience Resources
    Luis Marenco; Fiscal Year: 2008
    ..abstract_text> ..
  3. Interoperation of Genome Databases and Tools
    Kei Hoi Cheung; Fiscal Year: 2005
    ..We will extend our approach to other types of genomic data such as microarray data, which both laboratories and others will soon be generating in large quantities. ..
  4. Annual Conference on Computational Genomics
    Carol Bult; Fiscal Year: 2008
    ..In subsequent years, The Conference will altemate between the Northeast (Boston/Cambridge) and the Mid-Atlantic Region (Virginia/Maryland). ..
  5. Cognitive Orthosis with Interactive Task and Planning
    Edmund Lopresti; Fiscal Year: 2004
    ..e., astronauts). Evaluation of the Solo system will be conducted through focus groups and usability tests with clinicians, and clinical trials with individuals who have cognitive impairments. ..
  6. Genome Sequence Analysis: Theory and Practice
    Carol Bult; Fiscal Year: 2006
    ..unreadable] [unreadable] [unreadable]..
  7. A Framework Based Clinical Documentation Evaluation Method
    SAMUEL T ROSENBLOOM; Fiscal Year: 2010
    ..The proposed project will transition the PI from his current National Library of Medicine supported period of career development to an independent informatics investigator. ..
  8. Navigation Assistant for a Wheeled Walker
    Edmund Lopresti; Fiscal Year: 2005
    ..Phase II activities will include refining the prototype, implementing software for analyzing the activity level of the user, and testing the system extensively with potential users. ..
  9. Collaborative Study:Workplace Musculoskeletal Disorders
    David Rempel; Fiscal Year: 2006
    ..Study methods, instruments, and data format will be coordinated with the NIOSH Work-related Musculoskeletal Disorders Consortium. ..
  10. Smart Wheelchair Component System
    Edmund Lopresti; Fiscal Year: 2007
    ..unreadable] [unreadable]..
  11. Proactive Risk Reduction in Medication Prescribing in the Ambulatory Setting
    Terry Field; Fiscal Year: 2007
    ..3. Develop action plans for implementing identified interventions. [unreadable] [unreadable] [unreadable]..
  12. MouseCyc: A Biochemical Pathway Database for the Mouse
    Carol Bult; Fiscal Year: 2008
    ..The visualization and query interfaces for MouseCyc will further enhance the value of the mouse as a model system for understanding human biology and disease processes. ..
  13. Virtual Reality and Acute Pain Management for Children
    Lynnda Dahlquist; Fiscal Year: 2007
    ..unreadable] [unreadable]..
  14. A model for wrist and elbow musculoskeletal disorders
    David Rempel; Fiscal Year: 2004
    ....
  15. Smart Power Assistance Module for Manual Wheelchairs
    Edmund Lopresti; Fiscal Year: 2003
    ..Extensive outside evaluation of the SPAM will be provided throughout the course of the project by clinicians active in wheelchair seating and mobility. ..
  16. Using Information Systems to Improve Cardiac Prevention
    Jeffrey Schnipper; Fiscal Year: 2007
    ..Schnipper's development as an independent researcher in improving the quality of care of patients with CAD. ..
  17. TENDON FORCE DURING OCCUPATIONAL HAND ACTIVITIES
    David Rempel; Fiscal Year: 2001
    ..The proposed study is a collaborative effort between the University of California Ergonomics Program (UCSF), Hand and Microsurgery (UCSP), Mechanical Engineering (UC Berkeley), and the Smith-Kettlewell Eye Research Institute. ..
  18. EFFECTS OF AN ERGONOMIC INTERVENTION FOR COMPUTER WORK
    David Rempel; Fiscal Year: 2002
    ..5SD) of the pain severity-week score. The total cost of implementing the intervention will be estimated. The findings and recommendations will be disseminated statewide in cooperation with the California Department of Health Services. ..
  19. Effect of tool design on hand pain in dental practiioners
    David M Rempel; Fiscal Year: 2010
    ..This randomized controlled study will deterimine if dentists or dental hygienists who use such a tool report less hand and arm pain compared to those who continue to use the conventional tool design. ..
  20. Reverse Engineering Cortical Circuitry
    WILLIAM LYTTON; Fiscal Year: 2007
    ..This will set the stage for use of the subiculum slice and subiculum computer model as an epilepsy model. ..
  21. An Internet-based intervention for problem drinking
    John Cunningham; Fiscal Year: 2008
    ..Secondary hypotheses will address the mediating or moderating role of perceived drinking norms, perceived risk and the problem drinker's social reasons for drinking. ..
  22. Synergistic CT-Bronchoscopy for Lung-Cancer Assessment
    William Higgins; Fiscal Year: 2007
    ..Finally, the methods should be generalizable to other organ systems, in particular to applications in neurology, urology, gynecology and gastroenterology. [unreadable] [unreadable]..
  23. Virtual Patients for Computing Radiation Doses
    Xie Xu; Fiscal Year: 2007
    ..These two cores then support four parallel clinical projects. [unreadable] [unreadable] [unreadable]..
  24. Cognitive Enhancer May Facilitate Behavioral Exposure
    Barbara O Rothbaum; Fiscal Year: 2010
    ..abstract_text> ..
  25. Dietary Adherence Enhancement in Peritoneal Dialysis
    MARY SEVICK; Fiscal Year: 2007
    ..Measurements will occur as baseline, 4 months, and 8 months for both groups. [unreadable] [unreadable]..
  26. Perpetration of Partner Violence Among Adolescents from Violent Homes
    Ernest N Jouriles; Fiscal Year: 2010
    ..Identification of risk and protective factors and the processes by which they predict APV will facilitate the development of targeted interventions designed to prevent or arrest the development of APV. ..
  27. Low power analog electronics for an implantable cortical prosthetic
    Rahul Sarpeshkar; Fiscal Year: 2010
    ..It will also enable portable large-scale long-term instrumentation and monitoring of the brain in experimental neuroscience in a wireless fashion. ..
  28. Naturalistic Assessment of the Driving ability of Cognitively Impaired Elders
    BRIAN RICHARD OTT; Fiscal Year: 2010
    ....
  29. Prevention of Postpartum Weight Retention
    Rena Wing; Fiscal Year: 2009
    ....
  30. Metacognition and Control in Human Learning Memory
    JANET A METCALFE; Fiscal Year: 2010
    ....
  31. Improving Medication Adherence for Patients with Low Functional Health Literacy:
    Seth Wolpin; Fiscal Year: 2009
    ..We will utilize "Talking Pill Bottles" (i.e., medication containers with re-recordable audio capacity) to record prescription medication instructions so that patients can re-play the instructions as needed in their homes. ..
  32. Potential for HIV transmission in relationships of drug-using women in Russia
    Linda Niccolai; Fiscal Year: 2008
    ..unreadable] [unreadable] [unreadable]..
  33. Use of dominant repressor alleles for non-antibiotic selection in Yersinia pestis
    Gregory Phillips; Fiscal Year: 2008
    ..The methods described here will also be applicable to other select agents of bioterrorism. [unreadable] [unreadable] [unreadable]..
  34. Reduction and Telemetry of Neural Data for an Implantable Data Acquisition System
    MICHAEL RIZK; Fiscal Year: 2008
    ..unreadable] [unreadable] [unreadable]..
  35. Primary care alcohol intervention in college students
    Michael Fleming; Fiscal Year: 2008
    ..A positive trial would have important implications for the 4000 colleges and universities in the United States. ..
  36. Evaluating the Impact of Simulated Team Training on Patient Safety
    Daniel Scott; Fiscal Year: 2007
    ..unreadable] DESCRIPTION (not provided by the applicant): [unreadable] [unreadable] [unreadable] [unreadable]..
  37. DYNAMIC PATTERNS IN COMPLEX BIOLOGICAL SYSTEMS
    J A Scott Kelso; Fiscal Year: 2006
    ..unreadable] [unreadable] [unreadable]..
  38. Kinetics of Human Homocysteine Metabolism
    Glen Duncan; Fiscal Year: 2004
    ..g., exercise training and pharmacotherapy) on diabetes prevention and therapy. ..
  39. Force and Measurement Device - Phase II
    Rory Cooper; Fiscal Year: 2003
    ..g. playgrounds, parks, etc.). ..
  40. Healthcare Team Approach to Tobacco Cessation
    Alexander Prokhorov; Fiscal Year: 2005
    ..Also, to encourage and facilitate health care provider outreach in the community. AIM 5: To evaluate the proposed tobacco cessation counseling strategies for their costs and benefits. ..
  41. Egocentric reference frames in memory
    David Waller; Fiscal Year: 2005
    ..Findings may also lead to ways of improving spatial abilities in the general population. ..
  42. PREVENTING ABUSE IN ADOLESCENT DATING RELATIONSHIP
    ERNEST JOURILES; Fiscal Year: 2002
    ..Assessment methods will include self-report, partner-report, and observational measures of behavior. ..
  43. EFFECTIVENESS OF COMPUTER-BASED TRAINING: CTRAIN
    WYNDHAM ANGER; Fiscal Year: 2003
    ..In addition, feedback will be elicited from content experts to evaluate the potential for adoption of the computer-based training program and the "screenbuilder" environment. ..
  44. Cognitive Psychology of Traumatic Memory
    Richard McNally; Fiscal Year: 2004
    ..g., fantasy proneness, imagery ability) that predict performance in these memory tasks is proposed. ..
  45. Virtuality Reality Cue Exposure for Crack Cocaine
    Barbara Rothbaum; Fiscal Year: 2003
    ..The long-term objectives to be achieved in Phase II include the development and testing of the treatment of crack cocaine dependence using VR cue exposure therapy in a controlled design. ..
  46. A New Measure of Nursing Home Care Quality
    Marilyn Rantz; Fiscal Year: 2003
    ..abstract_text> ..
  47. THALAMIC NEURON DYNAMICS AND ABSENCE EPILEPSY
    WILLIAM LYTTON; Fiscal Year: 2002
    ..Finally, we will assess the in vitro responses of interneurons and thalamocortical cells to protocols that mimic established models of absence epilepsy. ..
  48. CUTANEOUS CONTROL OF EXPLORATORY HAND MOVEMENT
    ALLAN SMITH; Fiscal Year: 2001
    ..Ultimately both the prehension and tactile exploration tasks have promise as diagnostic and therapeutic techniques to aid in rehabilitation medicine with stroke patients and patients with peripheral neuropathies. ..
  49. STRUCTURE AND PLASTICITY OF CENTRAL HEARING MECHANISMS
    CRAIG HENKEL; Fiscal Year: 2002
    ..Results should lead to a better understanding of the influence of experience on the development of these binaural sensory pathways. ..
  50. CT-Bronchoscopy Workstation for Lung-Cancer Assessment
    William Higgins; Fiscal Year: 2006
    ..These benefits reduce the need for follow-up procedures, reducing cost and gaining time toward successful treatment, or, stated differently, improve the early diagnosis, staging, and treatment of lung cancer. ..
  51. Topomer selection by chemists from All structures
    Richard Cramer; Fiscal Year: 2006
    ..abstract_text> ..
  52. EXERCISE ADVICE BY HUMAN OR COMPUTER--TESTING 2 THEORIES
    Abby King; Fiscal Year: 2002
    ..Possible moderators and mediators of the response to intervention will be explored, as will costs associated with each intervention program. ..
  53. Advanced 3D Control Techniques for Powered Wheelchairs
    Rory Cooper; Fiscal Year: 2006
    ..This pilot study will provide the means to conduct a large-scale trial designed to implement robust controllers in electric powered wheelchairs and test the effect on safety, mobility, and community participation. ..
  54. Expert Visual Guidance of Ultrasound for Telemedicine
    Florence Sheehan; Fiscal Year: 2006
    ..Specific Aim #4 is to make the guidance easily applicable to different organs. [unreadable] [unreadable]..
  55. COMPUTERIZED PAIN REPORT & NURSING PAIN CONSULT PROTOCO
    Diana Wilkie; Fiscal Year: 2001
    ..Study findings will be used to guide revisions of the tool and to plan organizational level implementation of this new technology as an interface with the electronic health care record. ..
  56. Domestic Violence and Child Aggression
    ERNEST JOURILES; Fiscal Year: 2006
    ..abstract_text> ..
  57. Influence of Lactation on Postpartum Stress and Immunity
    MAUREEN EDITH GROER; Fiscal Year: 2010
    ..The immunology and endocrinology of the postpartum provides a lens through which to study autoimmune disease, as the postpartum is a critical period for development or exacerbation of many autoimmune diseases. ..
  58. Prevention of Weight Gain in Young Adults
    Rena Wing; Fiscal Year: 2009
    ..This approach shows promise for reducing weight gain and thereby improving long-term cardiovascular health. (End of Abstract) ..
  59. Tailored Teen Alcohol and Violence Prevention in the ER
    Maureen Walton; Fiscal Year: 2009
    ....
  60. REVAMP Follow-up Study Renewal
    Barbara Rothbaum; Fiscal Year: 2008
    ....
  61. Refining and Standardizing Health Literacy Assessment
    Elizabeth Hahn; Fiscal Year: 2007
    ....
  62. PRIDE: Program to Reduce Incontinence by Diet & Exercise
    Rena Wing; Fiscal Year: 2007
    ..If effective in womenwith incontinence, the methods and strategies of this innovative motivationally-focusedmaintenance intervention can beexamined n other obese populations. ..
  63. Long-Term Weight Loss Maintenance
    Rena Wing; Fiscal Year: 2007
    ..Such information is important for providing an accurate picture to those individuals seeking to lose weight of what it takes to be a successful weight loss maintainer. ..
  64. Measuring Children's Activity in its Social Context
    SANDRA HOFFERTH; Fiscal Year: 2005
    ....
  65. Translational Research on Extinction and PTSD
    Barbara Rothbaum; Fiscal Year: 2005
    ..Currently, no such interventions with proven efficacy exist. ..
  66. HEARING: DEVELOPMENT OF SYNAPTIC CIRCUITS
    CRAIG HENKEL; Fiscal Year: 2005
    ....
  67. Retrograde amnesia after hippocampal damage
    Robert Sutherland; Fiscal Year: 2006
    ..The results bear upon fundamental aspects of hippocampal dependent, long-term memory consolidation theories and will delineate a more precise role for the hippocampus formation in long-term memory. ..
  68. Datalogger Development for Wheelchair Mobility Outcomes
    Dan Ding; Fiscal Year: 2005
    ..abstract_text> ..
  69. Evaluation of Home Automated Telemanagement in COPD
    Joseph Finkelstein; Fiscal Year: 2008
    ..Finally, we will perform cost-effectiveness analysis of the HAT intervention in the COPD patients. ..
  70. Hypertension Telemanagement in African Americans
    Joseph Finkelstein; Fiscal Year: 2008
    ..Finally, we will perform cost-effectiveness analysis of the HAT intervention in the African American patients with hypertension. ..
  71. SINGLE CHANNEL HYBRID FES GAIT SYSTEM
    William Durfee; Fiscal Year: 2008
    ..The proposed approach for FES-aided gait is new and may provide choices for a wider pool of people with SCI than current solutions. [unreadable] [unreadable]..
  72. PARASPINAL MUSCLE DENERVATION AND SYMPTOMS IN LUMBAR SS
    Andrew Haig; Fiscal Year: 2005
    ..Subjects will repeat the test battery (MRI, EMG, and clinical evaluation) approximately 18 months later. Appropriate statistics will test each of the four hypotheses. ..
  73. DRIVING SIMULATOR FOR PERSONS WITH IMPAIRED COGNITION
    William Durfee; Fiscal Year: 2004
    ..At the end of Phase II, the applicant company (STI) will be prepared to move into a commercialization phase to bring the STISIM simulator into the rehabilitation market. ..