Summary: Specifications and instructions applied to the software.
Publications191 found, 100 shown here
- The Bioperl toolkit: Perl modules for the life sciencesJason E Stajich
University Program in Genetics, Duke University, Durham, North Carolina 27710, USA
Genome Res 12:1611-8. 2002..We conclude with a discussion of how the open-source nature of the project has contributed to the development effort...
- The systems biology markup language (SBML): a medium for representation and exchange of biochemical network modelsM Hucka
Control and Dynamical Systems, MC 107 81, California Institute of Technology, Pasadena, CA 91125, USA
Bioinformatics 19:524-31. 2003..Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively...
- ArrayExpress--a public repository for microarray gene expression data at the EBIAlvis Brazma
European Bioinformatics Institute, EMBL EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK
Nucleic Acids Res 31:68-71. 2003..With an increasing number of organisations adopting MAGE-ML standard, the volume of submissions to ArrayExpress is increasing rapidly. The database can be accessed at http://www.ebi.ac.uk/arrayexpress...
- MedEx: a medication information extraction system for clinical narrativesHua Xu
Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee 37232, USA
J Am Med Inform Assoc 17:19-24. 2010..5%, 93.9%, and 96.0% respectively. We then applied MedEx unchanged to outpatient clinic visit notes. It performed similarly with F-measures over 90% on a set of 25 clinic visit notes...
- Agile methods in biomedical software development: a multi-site experience reportDavid W Kane
SRA International, 4300 Fair Lakes Court, Fairfax, VA 22033, USA
BMC Bioinformatics 7:273. 2006..We have successfully used agile development approaches to create and maintain biomedical software, including software for bioinformatics. This paper reports on a qualitative study of our experiences using these methods...
- MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal imagesXiaosong Yuan
Jonsson Engineering Center, Center for Subsurface Sensing and Imaging Systems, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
Neuroinformatics 7:213-32. 2009..Spines were detected with false negative rates less than 10% on most datasets (the average is 7.1%), and the average false positive rate was 11.8%. The software is available in open source form...
- AMIDE: a free software tool for multimodality medical image analysisAndreas Markus Loening
Stanford University, Department of Radiology and the Bio X Program, 318 Campus Drive, East Wing, 1st Floor, Stanford, CA 94305 542, USA
Mol Imaging 2:131-7. 2003..AMIDE runs on UNIX, Macintosh OS X, and Microsoft Windows platforms, and it is freely available with source code under the terms of the GNU General Public License...
- Improving the quality of reports of meta-analyses of randomised controlled trials: the QUOROM statement. Quality of Reporting of Meta-analysesD Moher
University of Ottawa, Thomas C Chalmers Centre for Systematic Reviews, Ontario, Canada
Lancet 354:1896-900. 1999..The Quality of Reporting of Meta-analyses (QUOROM) conference was convened to address standards for improving the quality of reporting of meta-analyses of clinical randomised controlled trials (RCTs)...
- Automated water analyser computer supported system (AWACSS) Part I: Project objectives, basic technology, immunoassay development, software design and networkingJens Tschmelak
Institute of Physical and Theoretical Chemistry IPTC, Eberhard Karls University of Tuebingen, Auf der Morgenstelle 8, Tuebingen 72076, Germany
Biosens Bioelectron 20:1499-508. 2005..The second part article reports on the system performance, first real sample measurements, and an international collaborative trial (inter-laboratory tests) to compare the biosensor with conventional anayltical methods...
- PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II databaseKevin E Ashelford
Cardiff School of Biosciences, Cardiff University, PO Box 915, Cardiff CF10 3TL, UK
Nucleic Acids Res 30:3481-9. 2002..PRIMROSE has an intuitive graphical user interface and runs on the Microsoft Windows 95/NT/2000 operating systems. It is open source and is freely available from the authors...
- Osprey: a network visualization systemBobby Joe Breitkreutz
Samuel Lunenfeld Research Institute, Mount Sinai Hospital, University Avenue, Toronto, M5G 1X5, Canada
Genome Biol 4:R22. 2003..Mouse-over functions allow rapid elaboration and organization of network diagrams in a spoke model format. User-defined large-scale datasets can be readily combined with Osprey for comparison of different methods...
- Functional classification of proteins for the prediction of cellular function from a protein-protein interaction networkChristine Brun
Laboratoire de Genetique et Physiologie du Developpement, CNRS UMR6545, Parc Scientifique et Technologique de Luminy, Case 907, 13288 Marseille Cedex 9, France
Genome Biol 5:R6. 2003....
- GECKO: a complete large-scale gene expression analysis platformJoachim Theilhaber
Cambridge Genomics Center, Sanofi Aventis, 26 Landsdowne Street, Cambridge, MA 02139, USA
BMC Bioinformatics 5:195. 2004..Gecko (Gene Expression: Computation and Knowledge Organization) is a complete, high-capacity centralized gene expression analysis system, developed in response to the needs of a distributed user community...
- Complementary methods of system usability evaluation: surveys and observations during software design and development cyclesJan Horsky
Clinical Informatics Research and Development, Partners HealthCare, Boston, USA
J Biomed Inform 43:782-90. 2010..Appropriate use of these methods consistently during development may significantly improve system usability and contribute to higher adoption rates among clinicians and to improved quality of care...
- A multi-layered framework for disseminating knowledge for computer-based decision supportAziz A Boxwala
Division of Biomedical Informatics, Department of Medicine, University of California San Diego, La Jolla, California 92093 0728, USA
J Am Med Inform Assoc 18:i132-9. 2011..There are several challenges in encoding guideline knowledge in a form that is portable to different clinical sites, including the heterogeneity of clinical decision support (CDS) tools, of patient data representations, and of workflows...
- Probalign: multiple sequence alignment using partition function posterior probabilitiesUsman Roshan
Department of Computer Science, New Jersey Institute of Technology GITC 4400, University Heights, NJ 07102, USA
Bioinformatics 22:2715-21. 2006..The partition function methodology is one way of estimating these probabilities. Here, we combine these two ideas for the first time to construct maximal expected accuracy sequence alignments...
- OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracyG P S Raghava
School of Life Sciences, University of Dundee, Dow St, Dundee, DD1 5EH, Scotland, UK
BMC Bioinformatics 4:47. 2003..The benchmark shows the current state-of-the art for alignment accuracy and provides a baseline against which new alignment algorithms may be judged...
- The Ensembl analysis pipelineSimon C Potter
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Genome Res 14:934-41. 2004..Here we describe the fundamental software components of the pipeline, and we also highlight some features of the Sanger installation which were necessary to enable the pipeline to scale to whole-genome analysis...
- Reconstruction of metabolic networks from genome data and analysis of their global structure for various organismsHongwu Ma
GBF German Research Center for Biotechnology, Microbial Systems, Mascheroder Weg 1, 38124 Braunschweig, Germany
Bioinformatics 19:270-7. 2003..These networks are often very large and complex. To properly understand and analyze the global properties of metabolic networks, methods for rationally representing and quantitatively analyzing their structure are needed...
- Predicting functional sites with an automated algorithm suitable for heterogeneous datasetsDavid La
Department of Biological Sciences, California State Polytechnic University, Pomona, California 91768, USA
BMC Bioinformatics 6:116. 2005..However, in our original demonstration of the technique, phylogenetic motif identification is dependent upon a manually determined similarity threshold, prohibiting large-scale application of the technique...
- The guideline interchange format: a model for representing guidelinesL Ohno-Machado
Decision Systems Group, Brigham and Women s Hospital, Boston, MA 02115, USA
J Am Med Inform Assoc 5:357-72. 1998..To allow exchange of clinical practice guidelines among institutions and computer-based applications...
- Biopipe: a flexible framework for protocol-based bioinformatics analysisShawn Hoon
Institute of Molecular and Cell Biology, National University of Singapore, Singapore 117609
Genome Res 13:1904-15. 2003..This will enable researchers to discuss and interpret the data better as the once implicit assumptions are now explicitly defined within the Biopipe framework...
- An algorithm and program for finding sequence specific oligonucleotide probes for species identificationAlexander E Pozhitkov
University of Cologne, Institute of Genetics, AG Tautz Weyertal 121, D 50931 Cologne, Germany
BMC Bioinformatics 3:9. 2002..However, it shows also great promise for other small organisms that are taxonomically difficult to tract...
- GoMiner: a resource for biological interpretation of genomic and proteomic dataBarry R Zeeberg
Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
Genome Biol 4:R28. 2003..The first is a tree-like structure analogous to that in the AmiGO browser and the second is a compact, dynamically interactive 'directed acyclic graph'. Genes displayed in GoMiner are linked to major public bioinformatics resources...
- Toward the atomistic simulation of T cell epitopes automated construction of MHC: peptide structures for free energy calculationsSarah J Todman
Department of Crystallography, University of London, Birkbeck College, Malet Street, London WC1E 7HX, United Kingdom
J Mol Graph Model 26:957-61. 2008..The MHCsim server (http://igrid-ext.cryst.bbk.ac.uk/MHCsim) allows the user to rapidly generate any desired MHC:peptide complex and will facilitate molecular modelling simulation of MHC complexes on an unprecedented scale...
- Pegasys: software for executing and integrating analyses of biological sequencesSohrab P Shah
UBC Bioinformatics Centre, University of British Columbia, Vancouver, British Columbia, Canada
BMC Bioinformatics 5:40. 2004..We present Pegasys--a flexible, modular and customizable software system that facilitates the execution and data integration from heterogeneous biological sequence analysis tools...
- Decision support for teletraining of COPD patientsB Song
Bianying Song, Peter L Reichertz Institute for Medical Informatics, University of Braunschweig Institute of Technology and Hannover Medical School, Mühlenpfordtstrasse 23, 38106 Braunschweig, Germany
Methods Inf Med 49:96-102. 2010..Supervised physical training has been shown to promote rehabilitation of patients affected by chronic obstructive pulmonary disease (COPD). Currently, due to limited resources, not all COPD patients can be trained by an expert supervisor...
- B.E.A.R. GeneInfo: a tool for identifying gene-related biomedical publications through user modifiable queriesGuohui Zhou
Department of Pathology and Bioinformatics Program, Medical College of Wisconsin, Milwaukee, WI, 53226, USA
BMC Bioinformatics 5:46. 2004..In these situations having a tool for searching the biomedical literature using the list of identified genes while simultaneously defining additional search terms would be useful...
- Why did that happen? Exploring the proliferation of barely usable software in healthcare systemsC W Johnson
Department of Computing Science, University of Glasgow, Glasgow G12 8RZ, UK
Qual Saf Health Care 15:i76-81. 2006....
- Clinical decision support capabilities of commercially-available clinical information systemsAdam Wright
Partners HealthCare System, 93 Worcester St, Wellesley, MA 02481, USA
J Am Med Inform Assoc 16:637-44. 2009..Purpose The goal of this project was to describe and quantify the results of a study of decision support capabilities in Certification Commission for Health Information Technology (CCHIT) certified electronic health record systems...
- Apollo: a sequence annotation editorS E Lewis
Department of Molecular and Cellular Biology, Life Sciences Addition, University of California, Berkeley, CA 94720 3200, USA
Genome Biol 3:RESEARCH0082. 2002..FlyBase biologists successfully used Apollo to annotate the Drosophila melanogaster genome and it is increasingly being used as a starting point for the development of customized annotation editing tools for other genome projects...
- Recent developments of the chemistry development kit (CDK) - an open-source java library for chemo- and bioinformaticsChristoph Steinbeck
Cologne University Bioinformatics Center CUBIC, Germany
Curr Pharm Des 12:2111-20. 2006..This article introduces the CDK's new QSAR capabilities and the recently introduced interface to statistical software...
- A simple computer-based measurement and analysis system of pulmonary auscultation soundsHüseyin Polat
Department of Electronics Computer Education, Faculty of Technical Education, Gazi University, 06500 Teknikokullar, Ankara, Turkey
J Med Syst 28:665-72. 2004....
- MEA-Tools: an open source toolbox for the analysis of multi-electrode data with MATLABU Egert
Neurobiology and Biophysics, Institute for Biology III, Albert Ludwigs University Freiburg, Schänzlestr 1, 79104 Freiburg, Germany
J Neurosci Methods 117:33-42. 2002..g. intracellular amplifiers. Data may be processed as continuous recordings or time windows triggered to some event...
- PROforma: a general technology for clinical decision support systemsJ Fox
Imperial Cancer Research Fund, London, UK
Comput Methods Programs Biomed 54:59-67. 1997..This paper provides an overview of the motivation and structure of PROforma, and illustrates its use in the development of clinical applications...
- GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchiesBing Zhang
Graduate School in Genome Science and Technology, University of Tennessee Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
BMC Bioinformatics 5:16. 2004..Microarray and other high-throughput technologies are producing large sets of interesting genes that are difficult to analyze directly. Bioinformatics tools are needed to interpret the functional information in the gene sets...
- SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization dataBryan Chi
British Columbia Cancer Research Centre, British Columbia Cancer Agency, 601 W, 10th Ave, Vancouver, BC, V5Z 1L3 Canada
BMC Bioinformatics 5:13. 2004..Since array CGH provides signal ratio for each DNA segment, visualization would require the reassembly of individual data points into chromosome profiles...
- GIMS: an integrated data storage and analysis environment for genomic and functional dataMichael Cornell
Department of Computer Science, University of Manchester, Manchester M13 9PL, UK
Yeast 20:1291-306. 2003..The GIMS database can be accessed remotely using a Java application that can be downloaded from http://img.cs.man.ac.uk/gims...
- MARS: microarray analysis, retrieval, and storage systemMichael Maurer
Institute for Genomics and Bioinformatics, Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
BMC Bioinformatics 6:101. 2005..The wealth of data generated by this high throughput approach renders adequate database and analysis tools crucial for the pursuit of insights into the transcriptomic behavior of cells...
- Systems biology driven software design for the research enterpriseJohn Boyle
Institute for Systems Biology, 1441 N 34th Street, Seattle, WA 98103, USA
BMC Bioinformatics 9:295. 2008..As scientists work in isolated groups, integration with other groups is rarely a consideration when building the required software tools...
- A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structureSean R Eddy
Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, Saint Louis, Missouri 63110 USA
BMC Bioinformatics 3:18. 2002..The dynamic programming algorithm for aligning a CM to an RNA sequence of length N is O(N3) in memory. This is only practical for small RNAs...
- Processing methods for differential analysis of LC/MS profile dataMikko Katajamaa
Turku Centre for Biotechnology, Tykistokatu 6, FIN 20521, Turku, Finland
BMC Bioinformatics 6:179. 2005..One of the major challenges in this domain remains development of better solutions for processing of LC/MS data...
- The caCORE Software Development Kit: streamlining construction of interoperable biomedical information servicesJoshua Phillips
Science Applications International Corporation, Annapolis, MD, USA
BMC Med Inform Decis Mak 6:2. 2006..The caCORE Software Development Kit (SDK) was designed to provide developers both within and outside the NCI with the tools needed to construct such interoperable software systems...
- Developing a move-set for protein model refinementMarc N Offman
Biomolecular Modelling Laboratory, Cancer Research UK London Research Institute, Lincoln s Inn Fields Laboratories London, WC2A 3PX, UK
Bioinformatics 22:1838-45. 2006..The approach presented here carefully blends models created by several different means, in an attempt to combine the good quality regions from each into a final, more refined, model...
- Taverna: a tool for the composition and enactment of bioinformatics workflowsTom Oinn
EMBL European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK
Bioinformatics 20:3045-54. 2004..A growing number of these resources are being made available with programmatic access in the form of Web services. Bioinformatics scientists will need to orchestrate these Web services in workflows as part of their analyses...
- Globally distributed object identification for biological knowledgebasesTim Clark
Brief Bioinform 5:59-70. 2004..We see the adoption of these methods as important steps toward simpler, more elegant and more reliable integration of the world's biological knowledgebases, and as facilitating stronger global collaboration in biology...
- Swiss-Prot: juggling between evolution and stabilityAmos Bairoch
Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
Brief Bioinform 5:39-55. 2004....
- An object model and database for functional genomicsAndrew Jones
Department of Computing Science, University of Glasgow, Glasgow, UK
Bioinformatics 20:1583-90. 2004..We believe that all types of functional genomics experiments should be annotated in a consistent manner, and we hope to open up new ways of comparing multiple datasets used in functional genomics...
- The design of Jemboss: a graphical user interface to EMBOSSTim Carver
MRC UK HGMP Resource Centre, Hinxton, Cambridge CB10 1SB, UK
Bioinformatics 19:1837-43. 2003..The GUI parses the EMBOSS Ajax Command Definition language for form generation and maximum input flexibility. Jemboss interacts directly with the EMBOSS libraries to allow dynamic generation of application default settings...
- MatchMiner: a tool for batch navigation among gene and gene product identifiersKimberly J Bussey
Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH Building 37, Bethesda, MD 20892 4255, USA
Genome Biol 4:R27. 2003..The user inputs a list of gene identifiers and then uses the Merge function to find the overlap with a second list of identifiers of either the same or a different type or uses the LookUp function to find corresponding identifiers...
- A systematic approach to modeling, capturing, and disseminating proteomics experimental dataChris F Taylor
School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK
Nat Biotechnol 21:247-54. 2003..These make explicit what data might be most usefully captured about proteomics experiments and provide complementary routes toward the implementation of a proteome repository...
- FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux mapsSteffen Klamt
Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstrasse 1, D 39106 Magdeburg, Germany
Bioinformatics 19:261-9. 2003..The need of a user-friendly platform for stoichiometric modeling of metabolic networks in silico is evident...
- myGrid: personalised bioinformatics on the information gridRobert D Stevens
Department of Computer Science, University of Manchester, Oxford Road, Manchester, UK, M13 9PL
Bioinformatics 19:i302-4. 2003..Additional services are provided to support the scientific method and best practice found at the bench but often neglected at the workstation, notably provenance management, change notification and personalisation...
- Managing attribute--value clinical trials data using the ACT/DB client-server database systemP M Nadkarni
Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520 8009, USA
J Am Med Inform Assoc 5:139-51. 1998..It uses a Microsoft Access client running on Windows 95 machines, which communicates with an Oracle server running on a UNIX platform. ACT/DB is being used to manage the data for seven studies in its initial deployment...
- Toward high-throughput genotyping: dynamic and automatic software for manipulating large-scale genotype data using fluorescently labeled dinucleotide markersJ L Li
Osteoporosis Research Center, Creighton University, Omaha, Nebraska 68131, USA
Genome Res 11:1304-14. 2001..The modules and programs we developed for the can be extended to other database platforms, such as Microsoft SQL server, if the capability to handle still greater quantities of genotype data simultaneously is desired...
- Software design patterns for information visualizationJeffrey Heer
Computer Science Division, University of California, Berkeley, USA
IEEE Trans Vis Comput Graph 12:853-60. 2006..By representing design knowledge in a reusable form, these patterns can be used to facilitate software design, implementation, and evaluation, and improve developer education and communication.
- PEDRo: a database for storing, searching and disseminating experimental proteomics dataKevin Garwood
Department of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PL, UK
BMC Genomics 5:68. 2004..However, there is, as yet, no formally accepted standard representation to support the sharing of proteomics data, and little systematic dissemination of comprehensive proteomic data sets...
- An integrated computational pipeline and database to support whole-genome sequence annotationC J Mungall
Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
Genome Biol 3:RESEARCH0081. 2002..The key contributions to overall annotation quality are the marshalling of high-quality sequences for alignments and the design of a system with an adaptable and expandable flexible architecture...
- Software design for analysis of multichannel intracardial and body surface electrocardiogramsMark Potse
Medical Physics Department, Academic Medical Center AMC, University of Amsterdam, PO Box 22700, 1100 DE, Amsterdam, The Netherlands
Comput Methods Programs Biomed 69:225-36. 2002..The source code is made intelligible using software for structured documentation and is available to the users. The package is currently used by more than ten research groups analysing ECG data worldwide...
- The role of open-source software in innovation and standardization in radiologyBradley J Erickson
Department of Radiology, Radiology Informatics Laboratory, Mayo Clinic, Rochester, MN 55905, USA
J Am Coll Radiol 2:927-31. 2005..Continued support for OSS is essential for the success of our field...
- Computation of elementary modes: a unifying framework and the new binary approachJulien Gagneur
Cellzome AG, Meyerhofstr 1, 69117 Heidelberg, Germany
BMC Bioinformatics 5:175. 2004..However, computing elementary modes is a hard computational task. In recent years we assisted in a multiplication of algorithms dedicated to it. We require a summarizing point of view and a continued improvement of the current methods...
- EON: a component-based approach to automation of protocol-directed therapyM A Musen
Section on Medical Informatics, Stanford University School of Medicine, CA 94305 5479, USA
J Am Med Inform Assoc 3:367-88. 1996..A test of the reuse of the software components in a different clinical domain demonstrated rapid development of a prototype application to support protocol-based care of patients who have breast cancer...
- REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray dataCrispin Roven
Department of Biological Sciences, Columbia University, New York, NY, USA
Nucleic Acids Res 31:3487-90. 2003..bio.columbia.edu/reduce/. This web site provides functionality for the upload and management of microarray data. REDUCE analysis results can be viewed and downloaded, and optionally be shared with other users or made publicly accessible...
- A task framework for the web interface W2HPeter Ernst
DKFZ German Cancer Research Center, Department of Molecular Biophysics, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
Bioinformatics 19:278-82. 2003..The result of a compound task is given as XML data that is translated according to XSLT data into web pages or plain text to report the result of the task to the user...
- AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysisElarbi Badidi
The Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departement de Biochimie, Universite de Montreal, 2900, Boul, Edouard Montpetit, Montreal, QC H3T 1J4, Canada
BMC Bioinformatics 4:63. 2003....
- HotSwap for bioinformatics: a STRAP tutorialChristoph Gille
Institute for Biochemistry, Charite University Hospital, Humboldt University, Berlin, Germany
BMC Bioinformatics 7:64. 2006..Repeatedly loading large datasets can significantly slow down the development process. We have incorporated HotSwap functionality into the protein workbench STRAP, allowing developers to create plugins using the Java HotSwap technique...
- Interactive visualization and exploration of relationships between biological objectsD R Gilbert
Department of Computing, City University, Northampton Square, London UK EC1V 0HB
Trends Biotechnol 18:487-94. 2000..Data are visualized without preclustering and can be dynamically explored by the user using 'virtual-reality'. We illustrate this approach with two case studies from protein topology and gene expression...
- FPV: fast protein visualization using Java 3DTolga Can
Department of Computer Science, University of California at Santa Barbara, Santa Barbara, CA 93117 5110, USA
Bioinformatics 19:913-22. 2003..This behavior is especially apparent when the number of atoms to be displayed is huge, or when several proteins are to be displayed simultaneously for comparison...
- Expertise in professional software design: a process studyS Sonnentag
Department of Psychology, University of Amsterdam, The Netherlands
J Appl Psychol 83:703-15. 1998Forty professional software designers participated in a study in which they worked on a software design task and reported strategies for accomplishing that task...
- Web-based training modules in dermatologyA Bittorf
Department of Dermatology, University of Erlangen, Germany
MD Comput 14:371-6, 381. 1997..The responses to 200 questionnaires completed in a two-month study period are encouraging. The online resources are being used not only for training in dermatology but also for continuing education and reference...
- Enhanced quality and quantity of retrieval of Critically Appraised Topics using the CAT CrawlerP Dong
Medical Informatics Group, Bioinformatics Institute, Singapore
Med Inform Internet Med 29:43-55. 2004..In summary, the application provides physicians with a common interface to retrieve relevant CATs on particular clinical topics from multiple resources, and thus speeds up the decision making process...
- Resources for comparing the speed and performance of medical autocodersJules J Berman
Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
BMC Med Inform Decis Mak 4:8. 2004....
- FOUNTAIN: a JAVA open-source package to assist large sequencing projectsJ M Buerstedde
Department of Cellular Immunology, Heinrich Pette Institute, Martinistr 52, 20251 Hamburg, Germany
BMC Bioinformatics 2:6. 2001..The challenges include documentation of clones, templates and sequencing reactions, and the storage, annotation and analysis of the large number of generated sequences...
- An object-oriented programming system for the integration of internet-based bioinformatics resourcesAllan Beveridge
Max Planck Institute for Molecular Genetics, Berlin, Germany
Appl Bioinformatics 5:29-39. 2006..The validity of the software has been demonstrated by testing it on several biological databases. We also examine the current limitations of the Internet and discuss the need for the development of universal standards for web-based data...
- Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--XindiceFeng Li
Key Laboratory of Cancer Proteomics of Chinese Ministry of Health, Xiangya Hospital, Central South University, Changsha, China
BMC Bioinformatics 7:13. 2006..Although there are some cancer proteome databases now, there is still no NPC proteome database...
- Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generatorAlexander Garcia Castro
Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia
BMC Bioinformatics 6:87. 2005..Despite the proliferation of GUIs (Graphic User Interfaces) in bioinformatics, only some of them provide workflow capabilities; surprisingly, no meta-analysis of workflow operators and components in bioinformatics has been reported...
- MicroGen: a MIAME compliant web system for microarray experiment information and workflow managementSarah Burgarella
Bioengineering Department, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milan, Italy
BMC Bioinformatics 6:S6. 2005..Furthermore, complete information describing all experimental steps must be orderly collected to allow subsequent correct interpretation of experimental results...
- Web services and workflow management for biological resourcesPaolo Romano
Bioinformatics and Structural Proteomics, National Cancer Research Institute IST, Genova, I 16132, Italy
BMC Bioinformatics 6:S24. 2005..Information on biological resources and on genomic sequences mutations are two examples of very specialized datasets that are useful for specific research domains...
- Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browserJudith E Stenger
The Duke Center for Human Genetics, Duke University Medical Center, Durham, North Carolina 27710, USA
BMC Bioinformatics 6:95. 2005..We have developed a plug-in package for Ensembl called "Statistical Viewer" that facilitates the analysis of genomic features and annotation in the regions of interest defined by linkage analysis...
- High performance workflow implementation for protein surface characterization using grid technologyIvan Merelli
Istituto di Tecnologie Biomediche ITB CNR, via F lli Cervi, Segrate, Milan, Italy
BMC Bioinformatics 6:S19. 2005..The implementation of this workflow is based on the Italian Grid.it project infrastructure, that is a network of several computational resources and storage facilities distributed at different grid sites...
- The role of informatics in the coordinated management of biological resources collectionsPaolo Romano
Bioinformatics and Structural Proteomics, National Cancer Research Institute, Genoa, Italy
Appl Bioinformatics 4:175-86. 2005....
- FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platformPhilippe Gouret
EA 3781 EGEE Evolution, Genome, Environment, Universite de Provence, Case 36, Pl V Hugo, 13331 Marseille Cedex 03, France
BMC Bioinformatics 6:198. 2005..Several pipelines already automate some of these complex chaining but still necessitate an important contribution of biologists for supervising and controlling the results at various steps...
- YANA - a software tool for analyzing flux modes, gene-expression and enzyme activitiesRoland Schwarz
Dept of Bioinformatics, Biocenter, University of Wurzburg, Germany
BMC Bioinformatics 6:135. 2005..Analysis routines for expression levels and the most central, well connected metabolites and their metabolic connections are of particular interest...
- Integration of the Gene Ontology into an object-oriented architectureDaniel Shegogue
Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, 135 Cannon Street, Charleston, SC 29425, USA
BMC Bioinformatics 6:113. 2005....
- Intelligent client for integrating bioinformatics servicesIsmael Navas-Delgado
Integrated Bioinformatics GNV5 at the University of Málaga, National Institute for Bioinformatics INB, Malaga, Spain
Bioinformatics 22:106-11. 2006..However, each service demands specific interfaces to accommodate their parameters and it is a complicated task linking the different service inputs and outputs to solve a biological problem...
- Biotool2Web: creating simple Web interfaces for bioinformatics applicationsMohammad Shahid
International NRW Graduate School in Bioinformatics and Genome Research, Center of Biotechnology CeBiTec, University of Bielefeld, Bielefeld, Germany
Appl Bioinformatics 5:63-6. 2006..Biotool2Web uses an XML document containing the parameters to run the tool on the Web, and generates the corresponding HTML and common gateway interface (CGI) files ready to be published on a web server...
- MARVIN: a medical research application framework based on open source softwareTobias Rudolph
University of Bern, MEM Research Center, Institute for Surgical Technology and Biomechanics, Stauffacherstrasse 78, 3014 Bern, Switzerland
Comput Methods Programs Biomed 91:165-74. 2008..Furthermore, it implements an advanced visualization system and interfaces to a wide range of 3D tracking hardware. Since it uses only highly portable libraries, MARVIN applications run on Unix/Linux, Mac OS X and Microsoft Windows...
- Reinforcement learning interfaces for biomedical database systemsI Rudowsky
Dept of Comput and Inf Sci, Brooklyn College of the City Univ of New York, NY, USA
Conf Proc IEEE Eng Med Biol Soc 1:6269-72. 2006..The purpose of this study was to investigate how reinforcement learning algorithms can assist the user in interacting with the database interface application that has been developed to improve the performance of the system...
- Prototyping virtual cancer therapist (VCT): a software engineering approachS Liu
The Henry Samueli School of Engineering, UC Irvine, USA
Conf Proc IEEE Eng Med Biol Soc 1:5424-7. 2006..The prototype of VCT presented in this paper has not only demonstrated the capability of VCT but also identified problems that need to be addressed in the next cycle of development...
- On the way to building an integrated computational environment for the study of developmental patterns and genetic diseasesAndrei L Turinsky
Sun Center of Excellence for Visual Genomics, University of Calgary, Faculty of Medicine, Department of Biochemistry and Molecular Biology, Calgary, AB, Canada
Int J Nanomedicine 1:89-96. 2006....
- MAGMA: analysis of two-channel microarrays made easyHubert Rehrauer
Functional Genomics Center Zurich, UZH ETH Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
Nucleic Acids Res 35:W86-90. 2007..MAGMA is freely available at www.magma-fgcz.uzh.ch...
- iHOP web servicesJose M Fernandez
Structural Biology and Biocomputing Program, CNIO and Computer Science and Artificial Intelligence Laboratory, MIT
Nucleic Acids Res 35:W21-6. 2007..ihop-net.org/UniPub/iHOP/info/logs/). Here we describe a public programmatic API that enables the integration of main iHOP functionalities in bioinformatic programs and workflows...
- Developing a modern web interface for database-driven bioinformatics toolsParas Khandheria
UT Southwestern Medical Center, Dallas, TX 75390 9185, USA
IEEE Eng Med Biol Mag 26:96-8. 2007
- Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstractsA M Cohen
Department of Medical Informatics and Clinical Epidemiology, School of Medicine, Oregon Health and Science University, 3181 S, W, Sam Jackson Park Road, Portland, Oregon 97239 3098, USA
BMC Bioinformatics 6:103. 2005..The method was applied to the task of automatic gene and protein name synonym extraction...
- The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data setsMarcus Droege
Roche Applied Science, Global Marketing, 82372 Penzberg, Germany
J Biotechnol 136:3-10. 2008....
- cPath: open source software for collecting, storing, and querying biological pathwaysEthan G Cerami
Computational Biology Center, Memorial Sloan Kettering Cancer Center 1275 York Avenue, Box 460, New York, NY 10021, USA
BMC Bioinformatics 7:497. 2006..Standard exchange formats for pathway information, such as BioPAX, CellML, SBML and PSI-MI, enable convenient collection of this data for biological research, but mechanisms for common storage and communication are required...
- G-InforBIO: integrated system for microbial genomicsNaoto Tanaka
Center for Information Biology and DDBJ, National Institute of Genetics 1111 Yata, Mishima, Shizuoka 411 8540, Japan
BMC Bioinformatics 7:368. 2006..There are few tools for integrated analyses of genomic data, therefore, we developed software that enables users to handle, manipulate, and analyze genome data with a variety of sequence analysis programs...
- Designing for social data analysisMartin Wattenberg
IBM Research, Visual Communication Lab, Cambridge, MA 02142, USA
IEEE Trans Vis Comput Graph 12:549-57. 2006..We end by discussing the design of an extension of the NameVoyager to a more complex data set, in which the principles of social data analysis played a guiding role...
- GAMOLA: a new local solution for sequence annotation and analyzing draft and finished prokaryotic genomesEric Altermann
Department of Food Science, Southeast Dairy Foods Research Center, North Carolina State University, Raleigh, North Carolina 27695 7624, USA
OMICS 7:161-9. 2003..The software is available under the license of North Carolina State University. A website and a downloadable example are accessible under (http://fsweb2.schaub. ncsu.edu/TRKwebsite/index.htm)...
- MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolutionJames J Cai
Department of Microbiology, University of Hong Kong, Pokfulam, Hong Kong, China
BMC Bioinformatics 6:64. 2005..However, few functions are freely available in MATLAB to perform the sequence data analyses specifically required for molecular biology and evolution...
- HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology dataPrinal Trivedi
Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294, USA
BMC Bioinformatics 6:86. 2005..HDBStat! provides statisticians and biologists a flexible and easy-to-use interface to analyze complex microarray data using a variety of methods for data preprocessing, quality control analysis and hypothesis testing...
- Relating sleep disordered breathing to daytime functionINDU A AYAPPA; Fiscal Year: 2010..Validating a measure of sleep disordered breathing that relates to sleepiness will help improve the diagnosis and treatment of obstructive sleep apnea. ..
- Clinical management of cochlear implant patients with contralateral hearing aids.Mario A Svirsky; Fiscal Year: 2013....
- scribIT: a System for Freehand Production, Editing, Communication and ReproductioMichael J Rosen; Fiscal Year: 2012..It will also help to understand how visually impaired people create and interpret freehand tactile graphics and how to better use them in teaching and learning practice. ..
- ELECTROTACTILE DISPLAY OF COMPUTER GRAPHICS FOR BLINDKURT KACZMAREK; Fiscal Year: 2001....
- INTERACTIVE VIDEODISC INTERVENTION TO REDUCE CHDJohn Noell; Fiscal Year: 1993..In Phase II we will: (a) complete the Phase I development process for the remaining subpopulations (b) produce a complete stand-alone kiosk, suitable for use in worksites, and (c) evaluate the efficacy of the program...
- Preventing Unintended Pregnancy: Male Self-efficacyCHRISTY SHERMAN; Fiscal Year: 2003....
- INTERACTIVE VIDEODISC SMOKING CESSATION INTERVENTIONJohn Noell; Fiscal Year: 1992..Phase II will: (a) complete the Phase I evaluation procedures for the remaining subpopulations, and (b) produce a final smoking cessation program, resulting in a stand-alone kiosk suitable for use in physician's offices...
- COMPUTERIZED TOBACCO RISK ASSESSMENT FOR ADOLESCENTSEmil Chiauzzi; Fiscal Year: 1999..Phase II will include a three-month follow-up of adolescents exposed to the program. ..
- DELIVERY OF THE CGN INFORMATION RESOURCE DATABASEPrakash Nadkarni; Fiscal Year: 2006..Informatics assistance will be provided to the individual nodes to assist the task of data exchange, and when necessary, to assist the design of local data collection systems. ..
- ROBUST QUERY OF HETEROGENEOUS CLINICAL DATABASESPrakash Nadkarni; Fiscal Year: 2002..In particular, research will be performed on utilization of newer database technologies, such as new indexing methods, as well as parallel database implementations. ..
- DESIGN AND IMPLEMENTATION OF PHARMACOGENETIC DATABASEPrakash Nadkarni; Fiscal Year: 2002..Informatics assistance will be provided to the individual nodes to assist the task of data exchange, and when necessary, to assist the design of local data collection systems. ..
- Targeted Aggregation Inhibitors for the Treatment of Amyloid DiseasesSean Ekins; Fiscal Year: 2008..unreadable] [unreadable] [unreadable]..
- COMPUTER-AIDED DESIGN, SYNTHESIS, AND TESTING OF A NOVEL FAMILY OF TRIAZOLE-BASEDSean Ekins; Fiscal Year: 2008..unreadable] [unreadable] [unreadable]..
- SOFTWARE ARCHITECTURE FOR GUIDELINE DIRECTED THERAPYMark Musen; Fiscal Year: 2002....
- A Computational Testbed for Biosurveillance MethodsMark Musen; Fiscal Year: 2007..The computational architecture that we propose will serve[unreadable] as a model for the next generation of such systems.[unreadable]..
- Auditory nerve responses to electric pulse trainsCharles Miller; Fiscal Year: 2009..We expect the results of this work will guide future designs of cochlear-implant speech processors so that modulated stimuli can be better tailored to the encoding capacity of the user's auditory nerve. ..
- Diabetes and recombination in the 8.1 MHC haplotypeDaniel Geraghty; Fiscal Year: 2007..unreadable] [unreadable] [unreadable]..
- Enhancing Clinical Effectiveness Research with Natural Language Processing of EMRBRIAN L HAZLEHURST; Fiscal Year: 2010..We will demonstrate the utility of this infrastructure by conducting CER studies investigating the effectiveness of interventions in asthma and smoking, across the 6 participating health systems. ..
- STRUCTURAL ORGANIZATION AND PROTEOMICS OF TBThomas Terwilliger; Fiscal Year: 2005..The structural and functional information obtained in this project is to be placed in the public domain by timely deposition in publicly available databases. ..
- 2006 Diffraction Methods in Structual Biology ConferencePaul Adams; Fiscal Year: 2006..Junior participation will be encouraged with time for discussion after talks and a session devoted to talks selected from the poster-presentations. [unreadable] [unreadable] [unreadable] [unreadable]..
- Workplace Aerosol Sampling at Realistic Low WindspeedsJames Vincent; Fiscal Year: 2006..The new research will fill these gaps and place occupational aerosol exposure assessment on a still firmer footing. ..
- SOFTWARE AND INSTRUMENTATION TO IDENTIFY CANCER GENESHarold Garner; Fiscal Year: 2002..This will integrate our system with current major technologies to produce a tool that should be widely available in translational and clinical trials cancer research. ..
- DOPAMINE NEUROTRANSMISSION IN EXPERIMENTAL PARKINSONISMPAUL GARRIS; Fiscal Year: 2005..Moreover, L-DOPA is associated with adverse side effects after extended use, apparently due to non-physiological dopamine replacement. However, how L-DOPA acts on dopaminergic signaling is not completely established. ..
- Patch Clamp Amplifiers on a ChipFrederick Sigworth; Fiscal Year: 2007..The characterization of ion channel function, and the development of drugs that modify this function, urgently requires new instrumentation that allows "high throughput" measurements. [unreadable] [unreadable] [unreadable]..
- NALTREXONE AND CBT FOR PATIENTS WITH ALCOHOLISM AND PTSDEdna Foa; Fiscal Year: 2008..Therefore the findings from this study will be highly credible and should impact significantly on treatment recommendations for this impaired population. ..
- Change Detection in Serial MRIs of Patients with Brain GliomasBradley Erickson; Fiscal Year: 2008..It is our hope that in the future, a measurement method superior to or as an adjunct to human observation will become available, though this study will not attempt to go that far. [unreadable] [unreadable] [unreadable]..
- SPATIALLY ORIENTED DATABASE FOR DIGITAL BRAIN IMAGESEdward H Herskovits; Fiscal Year: 2010..We expect that, as we implement more components of this software suite, neuroscientists will find it much easier to perform complex multivariate analyses of their data relating structure and function of the human brain. ..
- Duplicate Article/Plagiarism DiscoveryHarold Garner; Fiscal Year: 2009..4) Create a secure resource that is available and open to all journals/reviewers, thus enabling them to estimate novelty and probable overlap with previous publications prior to acceptance. ..
- HLA-E, F, G interactions & the immunology of pregnancyDaniel Geraghty; Fiscal Year: 2008..We also propose to develop materials and reagents useful towards the further understanding of the structure, biochemistry, and function of HLA- E, F, and G. ..
- Web-based Family History Screening for Hereditary Breast Cancer RiskLouise Acheson; Fiscal Year: 2008..unreadable] [unreadable] [unreadable] [unreadable]..
- Computer Adaptive Testing for OA Clinical TrialsAlan Jette; Fiscal Year: 2006..We expect the gains in precision and efficiency of score estimation to be superior over traditional fixed forms of assessments and transform outcomes monitoring in OA clinical trials research. ..
- A Controlled Terminology for Diagnoses and Findings in General DentistryTitus Schleyer; Fiscal Year: 2008..unreadable] [unreadable] [unreadable]..
- New Hydropathy-Based computer Tools for Drug DiscoveryGLEN KELLOGG; Fiscal Year: 2009..Specific collaborative arrangements are in place to apply these tools to a range of current drug discovery problems. ..
- BioMediator: Biologic Data Integration& Analysis SystemPeter Tarczy Hornoch; Fiscal Year: 2005..abstract_text> ..
- PREVENTION INTERVENTIONS IN HISPANIC AND ANGLO CHILDRENChristine Kennedy; Fiscal Year: 2003..abstract_text> ..
- DENOISING ON MONTE CARLO DOSE DISTRIBUTIONSJoseph Deasy; Fiscal Year: 2005..These results would achieve our overall goal of increasing the clinical effectiveness of radiation therapy treatment planning. ..
- Three-dimensional structure of a CIC-type CI ChannelNikolaus Grigorieff; Fiscal Year: 2005..The location of the labels will be determined using difference Fourier maps. The work will produce the first model of a C1C-type ion channel, key to a more thorough understanding of C1C channel function. ..
- Personal Profile-Prostate:An Internet Decision SupportDonna Berry; Fiscal Year: 2004..After the programming is complete and the innovative web-based intervention is created, we will pilot test the program in 20 men with localized prostate cancer. ..
- New Technologies for Patch-Clamp RecordingFrederick Sigworth; Fiscal Year: 2002..The proposed simplification of the patch-clamp technique will have far-reaching benefits in the search for ion channel and transporter genes and in the discovery of new pharmacological agents. ..
- NURSING SUPPORT OF DECISIONS BY MEN WITH PROSTATE CANCERDonna Berry; Fiscal Year: 2002..A prototype decision support aid will be developed and a pilot test conducted to guide men through the personal issues, expectations, and preferences to be considered in treatment decision-making after a diagnosis of prostate cancer. ..
- Visual Preference and Receptive Vocabulary in InfancyMargaret Friend; Fiscal Year: 2003..2. The assessment of the convergent validity of parental report and visual preference measures of comprehension. 3. The longitudinal assessment of the predictive validity of the measures. ..
- Polymorphism & Transplantation Biology of Novel MHC lociDaniel Geraghty; Fiscal Year: 2004..abstract_text> ..
- The Role of Microsatellite Instability in CancerHarold Garner; Fiscal Year: 2005..We will also (Aim 3) investigate the effects of these mutations identified in Aim 2 on splicing by correlating them with the results of a quantitative global survey of splicing isoforms. ..
- REAL TIME IMAGING OF MENTAL ACTIVITYMark Cohen; Fiscal Year: 2001..The focus of the continued development will be on extending the basic capabilities and in packaging the data analysis tools and disseminating them to other researchers and institutions. ..
- CREATING GUIDELINES THAT ADAPT TO LOCAL CONTEXTSAziz Boxwala; Fiscal Year: 2003..We will compare the acceptance of recommendations contained in guidelines that have been adapted to acceptance of recommendations contained in guidelines that have not been adapted. ..
- RELATIONSHIP BETWEEN BIO. AND PSYCH. CORRELATES OF PTSDEdna Foa; Fiscal Year: 2005..The resolution of these questions has important implications for understanding the pathophysiology of PTSD, and may provide insight into the mechanisms associated with successful psychological treatment for this disorder. ..
- PATIENT SPECIFIC MODELS IN LUNG CANCER SCREENING WITH CTMatthew Brown; Fiscal Year: 2004..4] To compare radiologist accuracy and interpretation times of HR-hCT scans, both with and without assistance from the automated detection system, against pre-existing nodule detection methods. ..
- TRAINING PROGRAM IN MOLECULAR NEUROPHYSIOLOGYFrederick Sigworth; Fiscal Year: 2003..The program offers an environment for intellectual breadth and collaboration, as well as training in the professional and ethical conduct of research. ..
- IS NON-ADHERENCE A REVEALED PREFERENCELeslie Lenert; Fiscal Year: 2003..We will also use an expert panel to assess the clinical match between patients' regimens and their preferences. ..
- COMPUTATIONAL ANALYSIS OF HUMAN 'AT-RISK' DNA MOTIFSJUDITH STENGER; Fiscal Year: 2003..3) To set up an interactive on-line database and program server so that the scientific community can use the information and apply it to drive experimental research. ..
- DISTRIBUTED CORTICAL CODES FOR VISUAL MOTIONDavid Bradley; Fiscal Year: 2004..These will be the first studies to directly explore the link between distributed MT activity and the perception of visual motion. ..
- PROBABILISTIC MODELS OF PROTEIN AND RNA STRUCTURESean Eddy; Fiscal Year: 2006..A final aim proposes a method for identifying the mRNA targets of regulatory RNAs (such as the newly discovered micro RNAs) by comparative genome analysis. ..
- FACTORS AFFECTING USE OF MEDICATION TO TREAT ALCOHOLISMTAMI MARK; Fiscal Year: 2001..We propose to collect this information through experts panels and a national survey of physicians specialized in treating substance abuse. ..
- New Technologies for Patch-Clamp RecordingFrederick Sigworth; Fiscal Year: 2005..The proposed simplification of the patch-clamp technique will have far-reaching benefits in the search for ion channel and transporter genes and in the discovery of new pharmacological agents. ..
- Mediated Integration of Neuroscience ResourcesLuis Marenco; Fiscal Year: 2008..abstract_text> ..
- PARASPINAL MUSCLE DENERVATION AND SYMPTOMS IN LUMBAR SSAndrew Haig; Fiscal Year: 2005..Subjects will repeat the test battery (MRI, EMG, and clinical evaluation) approximately 18 months later. Appropriate statistics will test each of the four hypotheses. ..
- Maintenance of blocks-based tools for functional genomicSteven Henikoff; Fiscal Year: 2006..These various components will be packaged to facilitate updates and local implementations. [unreadable] [unreadable]..
- ONS Research Agenda ConferenceDonna Berry; Fiscal Year: 2007..The ONS Research Agenda will be evaluated after each conference from 2003-2007. [unreadable] [unreadable]..
- COMPUTER EDUCATION FOR BREAST CANCER GENETIC TESTINGMichael Green; Fiscal Year: 2001..abstract_text> ..
- Diffraction Methods in Structural Biology 2008 Gordon Research ConferencePaul Adams; Fiscal Year: 2008..There is a growing recognition that the use of such complementary techniques highly benefits the study of the increasingly complex assemblies of biological molecules now under investigation. [unreadable] [unreadable] [unreadable]..
- Data Mining Based Noninvasive Intracranial Pressure AssessmentXiao Hu; Fiscal Year: 2008..unreadable] [unreadable] [unreadable]..
- Usability Testing of a CDSS for Tobacco Use TreatmentTHEODORE MARCY; Fiscal Year: 2005..The effectiveness of the developed through this process would be assessed in a subsequent research proposal using a randomized controlled trial design. ..
- Physician Adherence to Tobacco Use Treatment GuidelinesTHEODORE MARCY; Fiscal Year: 2005..The candidate's work will be under the sponsorship of Dr. Brian Flynn of the Office of Health Promotion Research at the University of Vermont. ..
- Innovative Methods for Function and Disability AssessmentAlan Jette; Fiscal Year: 2007..The public health research and clinical communities would be the likely markets [unreadable] interested in the CAT technology that would be developed and evaluated in this STTR. [unreadable] [unreadable] [unreadable] [unreadable]..
- Biophysical studies of a Sulfolobus icosahedral virusReza Khayat; Fiscal Year: 2007..Detailed characterization of Archaea viruses may also expand our knowledge of viral evolution. ..
- Interoperation of Genome Databases and ToolsKei Hoi Cheung; Fiscal Year: 2005..We will extend our approach to other types of genomic data such as microarray data, which both laboratories and others will soon be generating in large quantities. ..
- Evaluating optimal methods for UV-risk assessmentJoel Hillhouse; Fiscal Year: 2007..This improvement in the measurement of skin cancer related behaviors should improve prevention efforts and lead to the prevention of future skin cancer. [unreadable] [unreadable] [unreadable]..
- A Data Fusion Method for Bedside Monitoring of Lumped Cerebral Arterial RadiiXiao Hu; Fiscal Year: 2008..abstract_text> ..
- Automated (AI) Analysis of Sleep Disordered BreathingIndu Ayappa; Fiscal Year: 2004..Successful completion of the training and research program will allow Dr. Ayappa to contribute independently to research in the field of sleep physiology. ..
- PARAMEDIC FIELD INITIATION OF MAGNESIUM NEUROPROTECTIVEJeffrey Saver; Fiscal Year: 2003..abstract_text> ..
- Reducing Breast Cancer Recurrence Risk in Black WomenMelinda Stolley; Fiscal Year: 2007..Aims include a 7% reduction in weight, a reduction in dietary fat intake, an increase in fruit and vegetable consumption, an increase in physical activity, and improved quality of life. ..
- Simulation Tool to Rapidly Design, Optimize, and Prototype Microfluidic DevicesADITYA BEDEKAR; Fiscal Year: 2006..Interfaces to other microfabrication processes will be developed. [unreadable] [unreadable] [unreadable]..
- Bioimage Suite: A structural, functional and metabolic image analysis platformXenophon Papademetris; Fiscal Year: 2009..g. diabetes, cardiovascular disease, autism, epilepsy), planning therapy (e.g. neurosurgery) and evaluating other proposed treatment procedures (e.g. new drugs) ..