Aspergillus niger CBS 513.88

Summary

Alias:

Top Publications

  1. doi Enzymatic synthesis of novel oligosaccharides from N-acetylsucrosamine and melibiose using Aspergillus niger α-galactosidase, and properties of the products
    Yohei Sakaki
    a Department of Chemistry and Life Science, College of Bioresource Sciences, Nihon University, Fujisawa, Japan
    Biosci Biotechnol Biochem 80:1836-42. 2016
  2. doi Kinetic properties and substrate inhibition of α-galactosidase from Aspergillus niger
    Julan Liao
    a Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
    Biosci Biotechnol Biochem 80:1747-52. 2016
  3. doi Contribution of arginase to manganese metabolism of Aspergillus niger
    Sarita Keni
    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, 400076, India
    Biometals 29:95-106. 2016
  4. pmc Purification, crystallization and preliminary X-ray diffraction analysis of NADP-dependent glutamate dehydrogenase from Aspergillus niger
    Prem Prakash
    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India
    Acta Crystallogr F Struct Biol Commun 70:1508-12. 2014
  5. pmc Mixed disulfide formation at Cys141 leads to apparent unidirectional attenuation of Aspergillus niger NADP-glutamate dehydrogenase activity
    Adhish S Walvekar
    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, Maharashtra, India
    PLoS ONE 9:e101662. 2014
  6. pmc Effect of C/N ratio and media optimization through response surface methodology on simultaneous productions of intra- and extracellular inulinase and invertase from Aspergillus niger ATCC 20611
    Mojdeh Dinarvand
    Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
    Biomed Res Int 2013:508968. 2013
  7. doi Chitinases CtcB and CfcI modify the cell wall in sporulating aerial mycelium of Aspergillus niger
    Jolanda M van Munster
    Microbial Physiology Research Group, Groningen Biomolecular Sciences and Biotechnology Institute GBB, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
    Microbiology 159:1853-67. 2013
  8. doi Understanding thermostability factors of Aspergillus niger PhyA phytase: a molecular dynamics study
    I A Noorbatcha
    Bioprocess and Molecular Engineering Research Unit BPMERU, Department of Biotechnology Engineering, Faculty of Engineering, International Islamic University Malaysia, Jalan Gombak, 53100 Kuala Lumpur, Malaysia
    Protein J 32:309-16. 2013
  9. pmc The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger
    Min Jin Kwon
    Department Molecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
    BMC Genomics 13:701. 2012
  10. doi Structural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA
    Masayo Kotaka
    Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK
    J Mol Biol 381:373-82. 2008

Patents

  1. Plants with increased yield
  2. Biotechnological production of acrylic acid
  3. Plants with increased yield (nue)
  4. RECOMBINANT HOST CELLS COMPRISING PHOSPHOKETOLASES

Scientific Experts

  • Jolanda M van Munster
  • M T Reetz
  • Mayken W Wadman
  • Aaron J Oakley
  • Liangwei Liu
  • Narayan S Punekar
  • Adhish S Walvekar
  • Sarita Keni
  • Yohei Sakaki
  • Julan Liao
  • Prem Prakash
  • Mojdeh Dinarvand
  • I A Noorbatcha
  • Hynek Mrázek
  • Birgit S Gruben
  • Mark Arentshorst
  • Dominik Mojzita
  • Arthur F J Ram
  • Doreen Schachtschabel
  • Min Jin Kwon
  • Masayo Kotaka
  • Shigeo Iki
  • Masayuki Okuyama
  • Haruhide Mori
  • Takayoshi Tagami
  • Seiya Chiba
  • Keigo Ishihara
  • Chiseko Sakuma
  • Yoshinori Yamori
  • Mitsuru Tashiro
  • Toshiyuki Nishio
  • Atsuo Kimura
  • Takako Hirano
  • Moe Katou
  • Wataru Hakamata
  • Prasenjit Bhaumik
  • Rajarshi Choudhury
  • Malihe Masomian
  • Azura Amid
  • Mohsen Zareian
  • Seyed Davoud Jazayeri
  • Malahat Rezaee
  • Arbakariya B Ariff
  • A M Sultan
  • Sahar Abbasi
  • H M Salleh
  • Lenka Weignerova
  • Silvia Herold
  • Ondrej Vanek
  • Miaomiao Zhou
  • Petr Man
  • Bernhard Seiboth
  • Ronald P de Vries
  • Ellen L Lagendijk
  • Karel Bezouska
  • Oldrich Benada
  • Benjamin M Nitsche
  • Vladimir Kren
  • Vera Meyer
  • Benjamin Metz
  • Joohae Park
  • Peter Richard
  • Thomas R Jørgensen
  • Jingshan Ren
  • Christopher Johnson
  • David K Stammers
  • Heather K Lamb
  • Alastair R Hawkins

Detail Information

Publications18

  1. doi Enzymatic synthesis of novel oligosaccharides from N-acetylsucrosamine and melibiose using Aspergillus niger α-galactosidase, and properties of the products
    Yohei Sakaki
    a Department of Chemistry and Life Science, College of Bioresource Sciences, Nihon University, Fujisawa, Japan
    Biosci Biotechnol Biochem 80:1836-42. 2016
    ..These results indicate that the physicochemical properties and steric structure of RafNAc differ considerably from those of Raf. ..
  2. doi Kinetic properties and substrate inhibition of α-galactosidase from Aspergillus niger
    Julan Liao
    a Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
    Biosci Biotechnol Biochem 80:1747-52. 2016
    ..A sequence comparison suggested that AglB had a shallow active-site pocket, and it can allow to hydrolyze the branched α-galactosides, but not linear raffinose family oligosaccharides. ..
  3. doi Contribution of arginase to manganese metabolism of Aspergillus niger
    Sarita Keni
    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai, 400076, India
    Biometals 29:95-106. 2016
    ..The relevance of arginase to cellular Mn[II] pool and homeostasis was evaluated and the results suggest that arginase regulation could occur via manganese availability...
  4. pmc Purification, crystallization and preliminary X-ray diffraction analysis of NADP-dependent glutamate dehydrogenase from Aspergillus niger
    Prem Prakash
    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400 076, India
    Acta Crystallogr F Struct Biol Commun 70:1508-12. 2014
    ..0%) and had only one molecule in the asymmetric unit. Initial phases were obtained by molecular replacement, and model building and structure refinement of AnGDH are in progress...
  5. pmc Mixed disulfide formation at Cys141 leads to apparent unidirectional attenuation of Aspergillus niger NADP-glutamate dehydrogenase activity
    Adhish S Walvekar
    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, Maharashtra, India
    PLoS ONE 9:e101662. 2014
    ..In sum, although Cys141 is catalytically not essential, its covalent modification provides a striking example of converting the biosynthetic AnGDH into a catabolic enzyme. ..
  6. pmc Effect of C/N ratio and media optimization through response surface methodology on simultaneous productions of intra- and extracellular inulinase and invertase from Aspergillus niger ATCC 20611
    Mojdeh Dinarvand
    Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
    Biomed Res Int 2013:508968. 2013
    ..2 to 1.3 times greater than in the medium optimized by one-factor-at-a-time, respectively. The results of bioprocesses optimization can be useful in the scale-up fermentation and food industry...
  7. doi Chitinases CtcB and CfcI modify the cell wall in sporulating aerial mycelium of Aspergillus niger
    Jolanda M van Munster
    Microbial Physiology Research Group, Groningen Biomolecular Sciences and Biotechnology Institute GBB, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
    Microbiology 159:1853-67. 2013
    ..niger cell walls during sporulation. These novel insights in the sporulation process in aspergilli are of strong scientific relevance, and also may aid industrial strain engineering. ..
  8. doi Understanding thermostability factors of Aspergillus niger PhyA phytase: a molecular dynamics study
    I A Noorbatcha
    Bioprocess and Molecular Engineering Research Unit BPMERU, Department of Biotechnology Engineering, Faculty of Engineering, International Islamic University Malaysia, Jalan Gombak, 53100 Kuala Lumpur, Malaysia
    Protein J 32:309-16. 2013
    ..The results also show that salt bridges may have stabilizing or destabilizing effect on the enzyme and influence its thermostability accordingly...
  9. pmc The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger
    Min Jin Kwon
    Department Molecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
    BMC Genomics 13:701. 2012
    ..niger, we investigated the transcriptome of A. niger when it was forced to overexpression the glaA gene (encoding glucoamylase, GlaA) and secrete GlaA to high level...
  10. doi Structural analysis of the recognition of the negative regulator NmrA and DNA by the zinc finger from the GATA-type transcription factor AreA
    Masayo Kotaka
    Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK
    J Mol Biol 381:373-82. 2008
    ..Thus, any regulatory effects on AreA function mediated by the binding of oxidised nicotinamide dinucleotides to NmrA in the NmrA-AreA ZF complex appear not to be modulated via protein conformational rearrangements...
  11. doi GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger
    Birgit S Gruben
    Microbiology and Kluyver Centre for Genomics of Industrial Fermentation, Utrecht University, Utrecht, The Netherlands
    FEBS Lett 586:3980-5. 2012
    ..Phenotypic and gene expression analysis of a wild type and a galX disruptant revealed that GalX regulates the d-galactose oxido-reductive pathway, but not the Leloir pathway in A. niger...
  12. pmc Non-structured amino-acid impact on GH11 differs from GH10 xylanase
    Liangwei Liu
    Life Science College, Henan Agricultural University, Zhengzhou, Henan, China
    PLoS ONE 7:e45762. 2012
    ..The impact of non-structured residues on GH11 xylanase was different from that of similar residues on GH10 xylanase, and the difference is attributed to structural difference between GH11 jelly-roll and GH10 (β/α)(8)...
  13. pmc L-xylo-3-hexulose reductase is the missing link in the oxidoreductive pathway for D-galactose catabolism in filamentous fungi
    Dominik Mojzita
    VTT Technical Research Centre of Finland, Espoo, 02044 VTT, Finland
    J Biol Chem 287:26010-8. 2012
    ..0 ± 0.5 mm and a V(max) = 5.5 ± 1.0 units/mg. We also confirmed that the product of the LXR4 reaction is D-sorbitol...
  14. doi Vacuolar H(+)-ATPase plays a key role in cell wall biosynthesis of Aspergillus niger
    Doreen Schachtschabel
    Institute of Biology Leiden, Leiden University, Molecular Microbiology and Biotechnology, Sylviusweg 72, 2333 BE Leiden, The Netherlands
    Fungal Genet Biol 49:284-93. 2012
    ..Our results indicate that the ATP-driven transport of protons and acidification of the vacuole is crucial for the strength of the fungal cell wall and that reduced activity of the V-ATPase induces the cell wall stress response pathway...
  15. doi Facile production of Aspergillus niger α-N-acetylgalactosaminidase in yeast
    Hynek Mrázek
    Laboratory of Protein Architecture, Institute of Microbiology, Academy of Sciences of the Czech Republic, Prague, Czech Republic
    Protein Expr Purif 81:106-14. 2012
    ..N-Glycosylation was confirmed at six of the eight potential N-glycosylation sites in both wild type and recombinant α-GalNAc-ase...
  16. doi The structure of Aspergillus niger phytase PhyA in complex with a phytate mimetic
    Aaron J Oakley
    CSIRO Molecular and Health Technology, 343 Royal Parade, Parkville, Victoria 3052, Australia
    Biochem Biophys Res Commun 397:745-9. 2010
    ..The new structures of A. niger PhyA are discussed in the context of protein engineering studies aimed at modulating pH preference and stability...
  17. doi Directed evolution of an enantioselective epoxide hydrolase: uncovering the source of enantioselectivity at each evolutionary stage
    Manfred T Reetz
    Max Planck Institut fur Kohlenforschung, Kaiser Wilhelm Platz 1, D 45470 Mulheim Ruhr, Germany
    J Am Chem Soc 131:7334-43. 2009
    ..Predictions regarding substrate scope and enantioselectivity of the best mutant are shown to be possible...
  18. pmc Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger
    Mayken W Wadman
    Bioorganic Chemistry, Utrecht University, 3584 CH, Utrecht, The Netherlands
    BMC Microbiol 9:59. 2009
    ..Nevertheless, the presence of sex related genes alone does not confirm sexual sporulation in A. niger...

Patents4

  1. Plants with increased yield
    Patent Number: WO2009037279-A1; Date:2009-03-26
  2. Biotechnological production of acrylic acid
    Patent Number: WO2009153047-A2; Date:2009-12-23
  3. Plants with increased yield (nue)
    Patent Number: WO2010046221-A1; Date:2010-04-29
  4. RECOMBINANT HOST CELLS COMPRISING PHOSPHOKETOLASES
    Patent Number: KR1020130117753-A; Date:2013-10-28