Martin Ryberg

Summary

Affiliation: University of Tennessee
Country: USA

Publications

  1. doi request reprint An evolutionary perspective on morphological and ecological characters in the mushroom family Inocybaceae (Agaricomycotina, Fungi)
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Goteborg, Sweden
    Mol Phylogenet Evol 55:431-42. 2010
  2. pmc Asynchronous origins of ectomycorrhizal clades of Agaricales
    Martin Ryberg
    Department of Ecology and Evolutionary Biology, University of Tennessee, 332 Hesler, Knoxville, TN 37996, USA
    Proc Biol Sci 279:2003-11. 2012
  3. doi request reprint Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, Sweden
    Mycorrhiza 21:289-96. 2011
  4. doi request reprint Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi
    Martin Ryberg
    Ecology and Evolutionary Biology, 443 Hesler, University of Tennessee, Knoxville, Tennessee 37996 1610, USA
    Evolution 65:1862-78. 2011
  5. doi request reprint DivBayes and SubT: exploring species diversification using Bayesian statistics
    Martin Ryberg
    Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996 1610, USA
    Bioinformatics 27:2439-40. 2011
  6. pmc Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)
    Martin Ryberg
    Department of Plant and Environmental Sciences, Goteborg University, Box 461, 405 30 Goteborg, Sweden
    BMC Evol Biol 8:50. 2008
  7. pmc Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
    R Henrik Nilsson
    Department of Plant and Environmental Sciences, Goteborg University, Sweden
    PLoS ONE 1:e59. 2006
  8. doi request reprint An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, PO Box 461, 405 30 Goteborg, Sweden
    New Phytol 181:471-7. 2009
  9. doi request reprint The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
    Rolf Henrik Nilsson
    Department of Plant and Environmental Sciences, University of Gothenburg, Goteborg, Sweden
    FEMS Microbiol Lett 296:97-101. 2009
  10. pmc Evolution of the toxins muscarine and psilocybin in a family of mushroom-forming fungi
    Pawel Kosentka
    Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, United States of America
    PLoS ONE 8:e64646. 2013

Collaborators

Detail Information

Publications14

  1. doi request reprint An evolutionary perspective on morphological and ecological characters in the mushroom family Inocybaceae (Agaricomycotina, Fungi)
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Goteborg, Sweden
    Mol Phylogenet Evol 55:431-42. 2010
    ..The states of three of the four ecological characters can therefore be predicted in a phylogenetic framework for species where they are unknown...
  2. pmc Asynchronous origins of ectomycorrhizal clades of Agaricales
    Martin Ryberg
    Department of Ecology and Evolutionary Biology, University of Tennessee, 332 Hesler, Knoxville, TN 37996, USA
    Proc Biol Sci 279:2003-11. 2012
    ..ECM lineages of Agaricales differ not only in age, but also in rates of diversification and rate of substitution at nuclear ribosomal RNA loci. These results question the biological uniformity of the ECM guild...
  3. doi request reprint Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, Sweden
    Mycorrhiza 21:289-96. 2011
    ..were also common. This study confirms that alpine communities are rich in ectomycorrhizal fungi including species from a wide variety of fungal lineages and also show that many dominant species have wide ecological amplitude...
  4. doi request reprint Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi
    Martin Ryberg
    Ecology and Evolutionary Biology, 443 Hesler, University of Tennessee, Knoxville, Tennessee 37996 1610, USA
    Evolution 65:1862-78. 2011
    ..We also caution against modeling multiple genes as a single partition when performing phylogenetic dating analyses...
  5. doi request reprint DivBayes and SubT: exploring species diversification using Bayesian statistics
    Martin Ryberg
    Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996 1610, USA
    Bioinformatics 27:2439-40. 2011
    ..Both programs implement Bayesian statistics and provide the ability to account for uncertainty in the ages of taxa in the underlying data, an improvement over more commonly used maximum likelihood methods...
  6. pmc Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota)
    Martin Ryberg
    Department of Plant and Environmental Sciences, Goteborg University, Box 461, 405 30 Goteborg, Sweden
    BMC Evol Biol 8:50. 2008
    ..In addition, the relative occurrence of Inocybe was contrasted to that of other mycorrhizal genera...
  7. pmc Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
    R Henrik Nilsson
    Department of Plant and Environmental Sciences, Goteborg University, Sweden
    PLoS ONE 1:e59. 2006
    ..Such approaches, popularly known as barcoding, are underpinned by the assumption that the reference databases used for comparison are sufficiently complete and feature correctly and informatively annotated entries...
  8. doi request reprint An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, PO Box 461, 405 30 Goteborg, Sweden
    New Phytol 181:471-7. 2009
    ..html#genus_search) offers new means, particularly for mycorrhizal and plant pathogenic fungi, to examine the IIS in GenBank in a taxon-oriented framework and to explore their metadata in an easily accessible and time-efficient manner...
  9. doi request reprint The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
    Rolf Henrik Nilsson
    Department of Plant and Environmental Sciences, University of Gothenburg, Goteborg, Sweden
    FEMS Microbiol Lett 296:97-101. 2009
    ....
  10. pmc Evolution of the toxins muscarine and psilocybin in a family of mushroom-forming fungi
    Pawel Kosentka
    Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, United States of America
    PLoS ONE 8:e64646. 2013
    ..Statistical analyses firmly reject a single origin of muscarine-producing taxa...
  11. doi request reprint An open source chimera checker for the fungal ITS region
    R H Nilsson
    Department of Plant and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Goteborg, Sweden
    Mol Ecol Resour 10:1076-81. 2010
    ..The proportion of chimeras in the sequence databases can be hypothesized to increase as emerging sequencing technologies drawing from pooled DNA samples are becoming important tools in molecular ecology research...
  12. pmc Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi
    R Henrik Nilsson
    Goteborg University, Botanical Institute, Box 461, 405 30 Goteborg, Sweden
    BMC Bioinformatics 6:178. 2005
    ..Mycorrhizal fungi--a field where species identification often is prohibitively complex--and the much used ITS locus were chosen as test bed...
  13. pmc A software pipeline for processing and identification of fungal ITS sequences
    R Henrik Nilsson
    University of Gothenburg, Department of Plant and Environmental Sciences, Box 461, 405 30 Goteborg, Sweden
    Source Code Biol Med 4:1. 2009
    ..The performance of the pipeline was evaluated on a dataset of 350 ITS sequences from fungi growing as epiphytes on building material...
  14. doi request reprint Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi
    Brian P Looney
    Department of Ecology and Evolutionary Biology, University of Tennessee, 332 Hesler Biology Building, Knoxville, TN, 37996 1610, USA
    Mol Ecol 25:630-47. 2016
    ....