David T Pride

Summary

Affiliation: University of California
Country: USA

Publications

  1. pmc Characterization of bacteriophage communities and CRISPR profiles from dental plaque
    Mayuri Naidu
    Department of Pathology, University of California, San Diego, CA, USA
    BMC Microbiol 14:175. 2014
  2. pmc Conservation of streptococcal CRISPRs on human skin and saliva
    Refugio Robles-Sikisaka
    Department of Pathology, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA 92093 0612, USA
    BMC Microbiol 14:146. 2014
  3. pmc Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
    David T Pride
    Department of Pathology, University of California, San Diego, CA, USA
    ISME J 6:915-26. 2012
  4. pmc Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
    David T Pride
    Departments of Pathology and Medicine, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA 92093 0612, USA
    Environ Microbiol 14:2564-76. 2012
  5. pmc Association between living environment and human oral viral ecology
    Refugio Robles-Sikisaka
    Department of Pathology, University of California, San Diego, CA 92093 0612, USA
    ISME J 7:1710-24. 2013
  6. pmc Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
    David T Pride
    Department of Pathology, University of California, San Diego, La Jolla, California 92093, USA
    Genome Res 21:126-36. 2011
  7. pmc Transcriptome analysis of bacteriophage communities in periodontal health and disease
    Tasha M Santiago-Rodríguez
    Department of Pathology, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA, 92093 0612, USA
    BMC Genomics 16:549. 2015
  8. pmc Human oral viruses are personal, persistent and gender-consistent
    Shira R Abeles
    Department of Medicine, University of California, San Diego, CA, USA
    ISME J 8:1753-67. 2014
  9. pmc Altered oral viral ecology in association with periodontal disease
    Melissa Ly
    Department of Pathology, University of California, San Diego, California, USA
    MBio 5:e01133-14. 2014
  10. pmc Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
    Dana Willner
    Department of Biology, San Diego State University, San Diego, CA 92182, USA
    Proc Natl Acad Sci U S A 108:4547-53. 2011

Detail Information

Publications16

  1. pmc Characterization of bacteriophage communities and CRISPR profiles from dental plaque
    Mayuri Naidu
    Department of Pathology, University of California, San Diego, CA, USA
    BMC Microbiol 14:175. 2014
    ..We sampled the saliva and dental plaque from 4 healthy human subjects to determine whether plaque was populated by viral communities, and whether there were differences in viral communities specific to subject or sample type...
  2. pmc Conservation of streptococcal CRISPRs on human skin and saliva
    Refugio Robles-Sikisaka
    Department of Pathology, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA 92093 0612, USA
    BMC Microbiol 14:146. 2014
    ..Human body surfaces have numerous bacteria that harbor CRISPRs, and their content can provide clues as to the types and features of viruses they may have encountered...
  3. pmc Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
    David T Pride
    Department of Pathology, University of California, San Diego, CA, USA
    ISME J 6:915-26. 2012
    ....
  4. pmc Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
    David T Pride
    Departments of Pathology and Medicine, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA 92093 0612, USA
    Environ Microbiol 14:2564-76. 2012
    ..Because interactions between bacteria and viruses help to determine the structure of bacterial communities, CRISPR-virus analyses are likely to provide insight into the forces shaping the human microbiome...
  5. pmc Association between living environment and human oral viral ecology
    Refugio Robles-Sikisaka
    Department of Pathology, University of California, San Diego, CA 92093 0612, USA
    ISME J 7:1710-24. 2013
    ..Our data on viromes and CRISPR content indicate that shared living environment may have a significant role in determining the ecology of human oral viruses. ..
  6. pmc Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
    David T Pride
    Department of Pathology, University of California, San Diego, La Jolla, California 92093, USA
    Genome Res 21:126-36. 2011
    ....
  7. pmc Transcriptome analysis of bacteriophage communities in periodontal health and disease
    Tasha M Santiago-Rodríguez
    Department of Pathology, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA, 92093 0612, USA
    BMC Genomics 16:549. 2015
    ..Oral phage communities also differ significantly between periodontal health and disease, but the gene expression of oral phage communities has not been previously examined...
  8. pmc Human oral viruses are personal, persistent and gender-consistent
    Shira R Abeles
    Department of Medicine, University of California, San Diego, CA, USA
    ISME J 8:1753-67. 2014
    ..Our findings that many viruses are stable and individual-specific members of the oral ecosystem suggest that viruses have an important role in the human oral ecosystem. ..
  9. pmc Altered oral viral ecology in association with periodontal disease
    Melissa Ly
    Department of Pathology, University of California, San Diego, California, USA
    MBio 5:e01133-14. 2014
    ..The significantly altered ecology of viruses of oral biofilm in subjects with periodontal disease compared to that of relatively periodontally healthy ones suggests that viruses may serve as useful indicators of oral health status...
  10. pmc Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
    Dana Willner
    Department of Biology, San Diego State University, San Diego, CA 92182, USA
    Proc Natl Acad Sci U S A 108:4547-53. 2011
    ..Our results indicate that the oral cavity is a reservoir for pblA and pblB genes and for phage SM1 itself. Further studies will determine the association between pblA and pblB genes in the oral cavity and the risk of endocarditis...
  11. pmc Global transcription of CRISPR loci in the human oral cavity
    Andrew G Lum
    Department of Pathology, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA, 92093 0612, USA
    BMC Genomics 16:401. 2015
    ....
  12. pmc Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes
    Shira R Abeles
    Department of Medicine, University of California, San Diego, La Jolla, CA, 92093, United States of America
    PLoS ONE 10:e0134941. 2015
    ..The emergence of antibiotic resistance in fecal viromes in response to long-term antibiotic therapy in humans suggests that viruses play an important role in the resilience of human microbial communities to antibiotic disturbances. ..
  13. pmc Bacterial biota in reflux esophagitis and Barrett's esophagus
    Zhiheng Pei
    Department of Pathology, New York University School of Medicine, New York, NY 10016, USA
    World J Gastroenterol 11:7277-83. 2005
    ..To identify the bacterial flora in conditions such as Barrettos esophagus and reflux esophagitis to determine if they are similar to normal esophageal flora...
  14. pmc Chemostat culture systems support diverse bacteriophage communities from human feces
    Tasha M Santiago-Rodríguez
    Department of Pathology, University of California, 9500 Gilman Drive, MC 0612, La Jolla, CA, 92093 0612, USA
    Microbiome 3:58. 2015
    ..Many are bacteriophages, and their role in driving bacterial diversity is difficult to decipher without the use of in vitro ecosystems that can reproduce human microbial communities...
  15. doi request reprint Molecular bases and role of viruses in the human microbiome
    Shira R Abeles
    Department of Medicine, University of California, San Diego, CA 92093, USA
    J Mol Biol 426:3892-906. 2014
    ....
  16. pmc Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses
    David T Pride
    Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA
    BMC Genomics 7:8. 2006
    ..Tetranucleotide usage deviation (TUD) patterns were chosen since they have previously been shown to contain phylogenetic signal similar to that of 16S rRNA...