- A hidden Markov model for predicting protein interfacesCao Nguyen
Department of Computer Science and Engineering, University of Colorado at Denver and Health Sciences, Denver, CO 80217, USA
J Bioinform Comput Biol 5:739-53. 2007..These results are better than those achieved by other methods used for identification of interfaces...
- Proteomic data mining using predicted peptide chromatographic retention timesBrian Tripet
Department of Biochemistry and Molecular Genetics, University of Colorado at Denver and Health Sciences Center, Aurora, CO 80045, USA
Int J Bioinform Res Appl 3:431-45. 2007..coli - K12 proteins. The retention calculation is based on the described formulae and the fragments/protein identification was carried out using a simple search-scoring algorithm...
- ClusFCM: an algorithm for predicting protein functions using homologies and protein interactionsCao Nguyen
Virginia Commonwealth University, VA 23238, USA
J Bioinform Comput Biol 6:203-22. 2008..The results indicate that ClusFCM predicts protein functions with high recall while not lowering precision. Supplementary information is available at http://www.egr.vcu.edu/cs/dmb/ClusFCM/...