Bo Liu

Summary

Affiliation: University of Maryland
Country: USA

Publications

  1. pmc MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets
    Bo Liu
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742, USA
    BMC Proc 5:S9. 2011
  2. pmc Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
    Bo Liu
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, USA
    BMC Genomics 12:S4. 2011
  3. pmc DNACLUST: accurate and efficient clustering of phylogenetic marker genes
    Mohammadreza Ghodsi
    Department of Computer Science, University of Maryland, College Park, MD 20742, USA
    BMC Bioinformatics 12:271. 2011
  4. pmc Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering
    David R Kelley
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, Department of Computer Science, 3115 Biomolecular Sciences Building 296, University of Maryland, College Park, MD 20742, USA
    Nucleic Acids Res 40:e9. 2012
  5. pmc Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection
    Brianna Lindsay
    University of Maryland, School of Medicine, Baltimore, Maryland, USA
    J Clin Microbiol 51:3263-9. 2013
  6. pmc Deep sequencing of the oral microbiome reveals signatures of periodontal disease
    Bo Liu
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, United States of America
    PLoS ONE 7:e37919. 2012

Collaborators

Detail Information

Publications6

  1. pmc MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets
    Bo Liu
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742, USA
    BMC Proc 5:S9. 2011
    ..Here we describe a powerful analytical method (MetaPath) that can identify differentially abundant pathways in metagenomic datasets, relying on a combination of metagenomic sequence data and prior metabolic pathway knowledge...
  2. pmc Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
    Bo Liu
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, USA
    BMC Genomics 12:S4. 2011
    ..One major limitation of prior computational methods used for this purpose is the use of a universal classification threshold for all genes at all taxonomic levels...
  3. pmc DNACLUST: accurate and efficient clustering of phylogenetic marker genes
    Mohammadreza Ghodsi
    Department of Computer Science, University of Maryland, College Park, MD 20742, USA
    BMC Bioinformatics 12:271. 2011
    ..g., only one sequence per cluster needs to be provided to downstream analyses)...
  4. pmc Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering
    David R Kelley
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, Department of Computer Science, 3115 Biomolecular Sciences Building 296, University of Maryland, College Park, MD 20742, USA
    Nucleic Acids Res 40:e9. 2012
    ..In a comparison among multiple gene finding methods, Glimmer-MG makes the most sensitive and precise predictions on simulated and real metagenomes for all read lengths and error rates tested...
  5. pmc Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection
    Brianna Lindsay
    University of Maryland, School of Medicine, Baltimore, Maryland, USA
    J Clin Microbiol 51:3263-9. 2013
    ..The agreement among methods was higher in cases than in controls. The new molecular technologies have a high potential for highly sensitive identification of bacterial diarrheal pathogens. ..
  6. pmc Deep sequencing of the oral microbiome reveals signatures of periodontal disease
    Bo Liu
    Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, United States of America
    PLoS ONE 7:e37919. 2012
    ....