Pratik D Jagtap

Summary

Affiliation: University of Minnesota
Country: USA

Publications

  1. pmc Iron-sparing response of Mycobacterium avium subsp. paratuberculosis is strain dependent
    Harish K Janagama
    Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, USA
    BMC Microbiol 10:268. 2010
  2. pmc A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
    Pratik Jagtap
    Minnesota Supercomputing Institute, Minneapolis, MN, USA
    Proteomics 13:1352-7. 2013
  3. pmc Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm
    Pratik Jagtap
    Minnesota Supercomputing Institute, Minneapolis, MN, USA
    Proteomics 12:1726-30. 2012
  4. pmc Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
    Joel D Rudney
    Department of Diagnostic and Biological Sciences, School of Dentistry, University of Minnesota, 515 Delaware St SE, Minneapolis, MN, 55455, USA
    Microbiome 3:69. 2015
  5. doi request reprint Metaproteomic analysis using the Galaxy framework
    Pratik D Jagtap
    Center for Mass Spectrometry and Proteomics, University of Minnesota, Minneapolis, MN, USA
    Proteomics 15:3553-65. 2015
  6. pmc Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery
    Joel A Kooren
    Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 321 Church St SE, 6 155 Jackson Hall, Minneapolis, Minnesota, 55455, USA
    Clin Proteomics 8:13. 2011

Collaborators

Detail Information

Publications6

  1. pmc Iron-sparing response of Mycobacterium avium subsp. paratuberculosis is strain dependent
    Harish K Janagama
    Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, USA
    BMC Microbiol 10:268. 2010
    ..To test this hypothesis, we carried out transcriptional and proteomic profiling of these MAP strains under iron-replete or -deplete conditions...
  2. pmc A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies
    Pratik Jagtap
    Minnesota Supercomputing Institute, Minneapolis, MN, USA
    Proteomics 13:1352-7. 2013
    ..Our results show that our two-step method maximizes the peptide matching sensitivity for applications requiring large databases, especially valuable for proteogenomics and metaproteomics studies...
  3. pmc Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm
    Pratik Jagtap
    Minnesota Supercomputing Institute, Minneapolis, MN, USA
    Proteomics 12:1726-30. 2012
    ..Overall our results establish a workflow for improved protein identification from high mass accuracy data...
  4. pmc Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
    Joel D Rudney
    Department of Diagnostic and Biological Sciences, School of Dentistry, University of Minnesota, 515 Delaware St SE, Minneapolis, MN, 55455, USA
    Microbiome 3:69. 2015
    ..That pattern may also extend to dysbiotic communities. In that case, shifts in community-wide protein relative abundance might provide better biomarkers of dysbiosis that can be achieved through taxonomy alone...
  5. doi request reprint Metaproteomic analysis using the Galaxy framework
    Pratik D Jagtap
    Center for Mass Spectrometry and Proteomics, University of Minnesota, Minneapolis, MN, USA
    Proteomics 15:3553-65. 2015
    ..All MS data have been deposited in the ProteomeXchange with identifier PXD001655 (http://proteomecentral.proteomexchange.org/dataset/PXD001655). ..
  6. pmc Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery
    Joel A Kooren
    Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 321 Church St SE, 6 155 Jackson Hall, Minneapolis, Minnesota, 55455, USA
    Clin Proteomics 8:13. 2011
    ..abstract:..