Ipsita Banerjee

Summary

Affiliation: University of Pittsburgh
Country: USA

Publications

  1. pmc Population based model of human embryonic stem cell (hESC) differentiation during endoderm induction
    Keith Task
    Department of Chemical Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
    PLoS ONE 7:e32975. 2012
  2. pmc Extracellular matrix aggregates from differentiating embryoid bodies as a scaffold to support ESC proliferation and differentiation
    Saik Kia Goh
    Department of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
    PLoS ONE 8:e61856. 2013
  3. pmc Analysis of regulatory network involved in mechanical induction of embryonic stem cell differentiation
    Xinan Zhang
    School of Mathematics and Statistics, Central China Normal University, Wuhan, China
    PLoS ONE 7:e35700. 2012
  4. pmc An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells
    Ipsita Banerjee
    Center for Engineering in Medicine, Massachusetts General Hospital, Harvard Medical School, Shriners Hospital for Children, 51 Blossom Street, Boston, MA 02114, USA
    Bioinformatics 26:1332-9. 2010
  5. doi request reprint Impact of co-culture on pancreatic differentiation of embryonic stem cells
    Ipsita Banerjee
    Center for Engineering in Medicine, Harvard Medical School, Massachusetts General Hospital, Boston, MA 02114, USA
    J Tissue Eng Regen Med 5:313-23. 2011
  6. pmc Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences
    Shibin Mathew
    Department of Chemical and Petroleum Engineering, University of Pittsburgh, 1249 Benedum Hall, 3700 O Hara Street, Pittsburgh, PA 15261, USA
    BMC Syst Biol 6:154. 2012
  7. ncbi request reprint Role of substrates in diabetes therapy: stem cell differentiation and islet transplantation
    Joseph E Candiello
    Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA
    Crit Rev Biomed Eng 39:535-55. 2011
  8. pmc Perfusion-decellularized pancreas as a natural 3D scaffold for pancreatic tissue and whole organ engineering
    Saik Kia Goh
    Department of Bioengineering, University of Pittsburgh, PA, USA
    Biomaterials 34:6760-72. 2013
  9. pmc Systems level approach reveals the correlation of endoderm differentiation of mouse embryonic stem cells with specific microstructural cues of fibrin gels
    Keith Task
    Department of Chemical Engineering, University of Pittsburgh, Pittsburgh, PA, USA
    J R Soc Interface 11:20140009. 2014
  10. pmc An integer optimization algorithm for robust identification of non-linear gene regulatory networks
    Nishanth Chemmangattuvalappil
    Department of Chemical Engineering, University of Pittsburgh, 1249 Benedum Hall, 3700 O Hara Street, Pittsburgh, PA 15261, USA
    BMC Syst Biol 6:119. 2012

Collaborators

Detail Information

Publications16

  1. pmc Population based model of human embryonic stem cell (hESC) differentiation during endoderm induction
    Keith Task
    Department of Chemical Engineering, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
    PLoS ONE 7:e32975. 2012
    ..While applied to initial endoderm commitment of hESC, the model is general enough to be applicable either to a system of adult stem cells or later stages of ESC differentiation...
  2. pmc Extracellular matrix aggregates from differentiating embryoid bodies as a scaffold to support ESC proliferation and differentiation
    Saik Kia Goh
    Department of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
    PLoS ONE 8:e61856. 2013
    ..These findings suggest that various treatment conditions allow the formulation of unique ESC-ECM derived scaffolds to enhance ESC bioactivities, including proliferation and differentiation for tissue regeneration applications...
  3. pmc Analysis of regulatory network involved in mechanical induction of embryonic stem cell differentiation
    Xinan Zhang
    School of Mathematics and Statistics, Central China Normal University, Wuhan, China
    PLoS ONE 7:e35700. 2012
    ..Such analysis sheds light on the pathway of stem cell differentiation indicating the prospect of the two culture configurations for further maturation...
  4. pmc An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells
    Ipsita Banerjee
    Center for Engineering in Medicine, Massachusetts General Hospital, Harvard Medical School, Shriners Hospital for Children, 51 Blossom Street, Boston, MA 02114, USA
    Bioinformatics 26:1332-9. 2010
    ..Knowledge of differentiation network will enable generation of desired cell fates by careful alteration of the governing network by adequate manipulation of cellular environment...
  5. doi request reprint Impact of co-culture on pancreatic differentiation of embryonic stem cells
    Ipsita Banerjee
    Center for Engineering in Medicine, Harvard Medical School, Massachusetts General Hospital, Boston, MA 02114, USA
    J Tissue Eng Regen Med 5:313-23. 2011
    ..Such a high yield of pancreatic islet cells has not yet been reported. Our findings establish a robust protocol for islet differentiation...
  6. pmc Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences
    Shibin Mathew
    Department of Chemical and Petroleum Engineering, University of Pittsburgh, 1249 Benedum Hall, 3700 O Hara Street, Pittsburgh, PA 15261, USA
    BMC Syst Biol 6:154. 2012
    ..In this work we analyze the regulatory interactions mediating different pathways of endoderm induction by identifying co-regulated transcription factors...
  7. ncbi request reprint Role of substrates in diabetes therapy: stem cell differentiation and islet transplantation
    Joseph E Candiello
    Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA
    Crit Rev Biomed Eng 39:535-55. 2011
    ..In this review, we discuss the extensive use of various substrates for pancreatic differentiation of different stem cell sources, along with different biomaterial designs used for islet transplantation...
  8. pmc Perfusion-decellularized pancreas as a natural 3D scaffold for pancreatic tissue and whole organ engineering
    Saik Kia Goh
    Department of Bioengineering, University of Pittsburgh, PA, USA
    Biomaterials 34:6760-72. 2013
    ....
  9. pmc Systems level approach reveals the correlation of endoderm differentiation of mouse embryonic stem cells with specific microstructural cues of fibrin gels
    Keith Task
    Department of Chemical Engineering, University of Pittsburgh, Pittsburgh, PA, USA
    J R Soc Interface 11:20140009. 2014
    ..Such analysis may be effective in guiding the design of scaffolds with specific properties for tissue engineering applications. ..
  10. pmc An integer optimization algorithm for robust identification of non-linear gene regulatory networks
    Nishanth Chemmangattuvalappil
    Department of Chemical Engineering, University of Pittsburgh, 1249 Benedum Hall, 3700 O Hara Street, Pittsburgh, PA 15261, USA
    BMC Syst Biol 6:119. 2012
    ..Furthermore, evidence of robust algorithms directly exploiting basic biological traits are few. Such algorithms are expected to be efficient in their performance and robust in their prediction...
  11. pmc Potential for pancreatic maturation of differentiating human embryonic stem cells is sensitive to the specific pathway of definitive endoderm commitment
    Maria Jaramillo
    Department of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
    PLoS ONE 9:e94307. 2014
    ..Additionally, we have concluded that early analysis of PP markers is indicative of its potential for pancreatic maturation. ..
  12. doi request reprint A study of strontium doped calcium phosphate coatings on AZ31
    Satish S Singh
    Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA Electronic address
    Mater Sci Eng C Mater Biol Appl 40:357-65. 2014
    ..These results suggest that Sr(2+) doped coatings are capable of promoting osteogenic differentiation on degradable Mg alloys, while also enhancing corrosion protection, in comparison to undoped CaP coatings. ..
  13. pmc Regulatory interactions maintaining self-renewal of human embryonic stem cells as revealed through a systems analysis of PI3K/AKT pathway
    Shibin Mathew
    Department of Chemical and Petroleum Engineering, University of Pittsburgh, PA 15261, Department of Bioengineering and McGowan Institute for Regenerative Medicine, University of Pittsburgh, Pittsburgh, PA 15219, USA
    Bioinformatics 30:2334-42. 2014
    ..Here, we have developed a systems analysis approach to identify regulatory components that control PI3K/AKT pathway in self-renewing hESCs...
  14. pmc Global sensitivity analysis of a mathematical model of acute inflammation identifies nonlinear dependence of cumulative tissue damage on host interleukin-6 responses
    Shibin Mathew
    Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA 15261, USA Electronic address
    J Theor Biol 358:132-48. 2014
    ....
  15. pmc Endothelial cell co-culture mediates maturation of human embryonic stem cell to pancreatic insulin producing cells in a directed differentiation approach
    Maria Jaramillo
    Department of Bioengineering, University of Pittsburgh, USA
    J Vis Exp . 2012
    ..While several endothelial cells have been tested in the co-culture, herein we present our data with rat heart microvascular endothelial Cells (RHMVEC), primarily for the ease of analysis...
  16. pmc Early differentiation patterning of mouse embryonic stem cells in response to variations in alginate substrate stiffness
    Joseph Candiello
    Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA, USA
    J Biol Eng 7:9. 2013
    ..Therefore it will be important to design the encapsulation material to be supportive to cellular functionality and maturation...