Mehmet Koyutürk

Summary

Affiliation: Purdue University
Country: USA

Publications

  1. ncbi request reprint An efficient algorithm for detecting frequent subgraphs in biological networks
    Mehmet Koyutürk
    Department of Computer Sciences, Purdue University, West Lafayette, IN 47907, USA
    Bioinformatics 20:i200-7. 2004
  2. ncbi request reprint Pairwise alignment of protein interaction networks
    Mehmet Koyutürk
    Department of Computer Sciences, Purdue University, West Lafayette, IN 47907, USA
    J Comput Biol 13:182-99. 2006
  3. ncbi request reprint Detecting conserved interaction patterns in biological networks
    Mehmet Koyutürk
    Department of Computer Sciences, Purdue University, West Lafayette, Indiana 47906, USA
    J Comput Biol 13:1299-322. 2006
  4. ncbi request reprint Assessing significance of connectivity and conservation in protein interaction networks
    Mehmet Koyutürk
    Department of Computer Science, Purdue University, West Lafayette, IN 47907, USA
    J Comput Biol 14:747-64. 2007
  5. ncbi request reprint Functional annotation of regulatory pathways
    Jayesh Pandey
    Department of Computer Science, Purdue University, USA
    Bioinformatics 23:i377-86. 2007
  6. doi request reprint Functional coherence in domain interaction networks
    Jayesh Pandey
    Department of Computer Science, Purdue University, West Lafayette, IN, USA
    Bioinformatics 24:i28-34. 2008
  7. pmc Functional characterization and topological modularity of molecular interaction networks
    Jayesh Pandey
    Department of Computer Science, Purdue University, West Lafayette, IN, USA
    BMC Bioinformatics 11:S35. 2010
  8. ncbi request reprint Annotating pathways in interaction networks
    Jayesh Pandey
    Department of Computer Science, Purdue University, West Lafayette, IN 47907, USA
    Pac Symp Biocomput . 2008

Detail Information

Publications8

  1. ncbi request reprint An efficient algorithm for detecting frequent subgraphs in biological networks
    Mehmet Koyutürk
    Department of Computer Sciences, Purdue University, West Lafayette, IN 47907, USA
    Bioinformatics 20:i200-7. 2004
    ..Graph theoretic formalisms, commonly used for these analysis tasks, often lead to computationally hard problems due to their relation with subgraph isomorphism...
  2. ncbi request reprint Pairwise alignment of protein interaction networks
    Mehmet Koyutürk
    Department of Computer Sciences, Purdue University, West Lafayette, IN 47907, USA
    J Comput Biol 13:182-99. 2006
    ..Detailed experimental results from an implementation of the proposed framework show that our algorithm is able to discover conserved interaction patterns very effectively, in terms of both accuracies and computational cost...
  3. ncbi request reprint Detecting conserved interaction patterns in biological networks
    Mehmet Koyutürk
    Department of Computer Sciences, Purdue University, West Lafayette, Indiana 47906, USA
    J Comput Biol 13:1299-322. 2006
    ..The software, sample input graphs, and detailed results for comprehensive analysis of nine eukaryotic PPI networks are available at www.cs.purdue.edu/homes/koyuturk/mule...
  4. ncbi request reprint Assessing significance of connectivity and conservation in protein interaction networks
    Mehmet Koyutürk
    Department of Computer Science, Purdue University, West Lafayette, IN 47907, USA
    J Comput Biol 14:747-64. 2007
    ....
  5. ncbi request reprint Functional annotation of regulatory pathways
    Jayesh Pandey
    Department of Computer Science, Purdue University, USA
    Bioinformatics 23:i377-86. 2007
    ..g. Gene Ontology) provide comprehensive understanding of the function of individual molecules. Extending such annotations to pathways is a critical component of functional characterization of cellular signaling at the systems level...
  6. doi request reprint Functional coherence in domain interaction networks
    Jayesh Pandey
    Department of Computer Science, Purdue University, West Lafayette, IN, USA
    Bioinformatics 24:i28-34. 2008
    ..Our investigation provides the necessary basis for continued and focused investigation of DDIs as abstractions for functional characterization and modularization of networks...
  7. pmc Functional characterization and topological modularity of molecular interaction networks
    Jayesh Pandey
    Department of Computer Science, Purdue University, West Lafayette, IN, USA
    BMC Bioinformatics 11:S35. 2010
    ..Network-based methods focus on interacting molecules (pairs or sets) occurring in close proximity to infer functional associations...
  8. ncbi request reprint Annotating pathways in interaction networks
    Jayesh Pandey
    Department of Computer Science, Purdue University, West Lafayette, IN 47907, USA
    Pac Symp Biocomput . 2008
    ..Comprehensive evaluation on the E. coli transcriptional regulation and proteinprotein interaction data demonstrate NARADA's ability to detect known, as well as novel pathways...