Aaron Liston

Summary

Affiliation: Oregon State University
Country: USA

Publications

  1. ncbi request reprint Molecular phylogenetics of the clover genus (Trifolium--Leguminosae)
    Nick W Ellison
    Grasslands Research Centre, AgResearch, Private Bag 11008, Palmerston North, New Zealand
    Mol Phylogenet Evol 39:688-705. 2006
  2. pmc An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines
    Michael DeGiorgio
    Department of Biology, Pennsylvania State University, University Park, PA 16802, USA
    BMC Evol Biol 14:67. 2014
  3. ncbi request reprint The relative importance of sexual reproduction versus clonal spread in an aridland bunchgrass
    A Liston
    Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331, USA
    Oecologia 137:216-25. 2003
  4. ncbi request reprint Interspecific phylogenetic analysis enhances intraspecific phylogeographical inference: a case study in Pinus lambertiana
    Aaron Liston
    Department of Botany and Plant Pathology, 2082 Cordley Hall, Oregon State University, Corvallis, Oregon 97331, USA
    Mol Ecol 16:3926-37. 2007
  5. doi request reprint Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
    Shannon C K Straub
    Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, Oregon 97331, USA
    Am J Bot 99:349-64. 2012
  6. pmc Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    Matthew Parks
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    BMC Biol 7:84. 2009
  7. doi request reprint Reticulate evolution and incomplete lineage sorting among the ponderosa pines
    Ann Willyard
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Mol Phylogenet Evol 52:498-511. 2009
  8. doi request reprint Targeted enrichment strategies for next-generation plant biology
    Richard Cronn
    Pacific Northwest Research Station, USDA Forest Service, Corvallis, Oregon 97331, USA
    Am J Bot 99:291-311. 2012
  9. pmc Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)
    Matthew Parks
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331 2902, USA
    BMC Evol Biol 12:100. 2012
  10. pmc An evaluation of putative sympatric speciation within Limnanthes (Limnanthaceae)
    Stephen C Meyers
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
    PLoS ONE 7:e36480. 2012

Collaborators

Detail Information

Publications25

  1. ncbi request reprint Molecular phylogenetics of the clover genus (Trifolium--Leguminosae)
    Nick W Ellison
    Grasslands Research Centre, AgResearch, Private Bag 11008, Palmerston North, New Zealand
    Mol Phylogenet Evol 39:688-705. 2006
    ..A single origin of all North and South American species is hypothesized, while the species of sub-Saharan Africa may originate from three separate dispersal events...
  2. pmc An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines
    Michael DeGiorgio
    Department of Biology, Pennsylvania State University, University Park, PA 16802, USA
    BMC Evol Biol 14:67. 2014
    ....
  3. ncbi request reprint The relative importance of sexual reproduction versus clonal spread in an aridland bunchgrass
    A Liston
    Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331, USA
    Oecologia 137:216-25. 2003
    ..In the case of this community dominant species, this provides essential information for understanding succession and developing management and restoration strategies...
  4. ncbi request reprint Interspecific phylogenetic analysis enhances intraspecific phylogeographical inference: a case study in Pinus lambertiana
    Aaron Liston
    Department of Botany and Plant Pathology, 2082 Cordley Hall, Oregon State University, Corvallis, Oregon 97331, USA
    Mol Ecol 16:3926-37. 2007
    ..This study demonstrates the importance of placing phylogeographical results in a broader phylogenetic context...
  5. doi request reprint Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics
    Shannon C K Straub
    Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, Oregon 97331, USA
    Am J Bot 99:349-64. 2012
    ..By combining multiplexing approaches with NGS throughput, systematists may no longer need to choose between more taxa or more characters. Here we describe a genome skimming (shallow sequencing) approach for plant systematics...
  6. pmc Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    Matthew Parks
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    BMC Biol 7:84. 2009
    ..Is it possible to efficiently apply massively parallel sequencing to increase phylogenetic resolution at low taxonomic levels?..
  7. doi request reprint Reticulate evolution and incomplete lineage sorting among the ponderosa pines
    Ann Willyard
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Mol Phylogenet Evol 52:498-511. 2009
    ..washoensis individual. We conclude that incomplete lineage sorting could account for other examples of non-monophyly, and caution against any analysis based on single-accession or single-locus sampling in Pinus...
  8. doi request reprint Targeted enrichment strategies for next-generation plant biology
    Richard Cronn
    Pacific Northwest Research Station, USDA Forest Service, Corvallis, Oregon 97331, USA
    Am J Bot 99:291-311. 2012
    ....
  9. pmc Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)
    Matthew Parks
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331 2902, USA
    BMC Evol Biol 12:100. 2012
    ....
  10. pmc An evaluation of putative sympatric speciation within Limnanthes (Limnanthaceae)
    Stephen C Meyers
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
    PLoS ONE 7:e36480. 2012
    ..Our results indicate that although L. floccosa ssp. floccosa and L. floccosa ssp. grandiflora are closely related, they are not sister taxa and therefore likely did not diverge as a result of a sympatric speciation event...
  11. ncbi request reprint Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations for pinus
    Ann Willyard
    Department of Botany and Plant Pathology, Oregon State University, USA
    Mol Biol Evol 24:90-101. 2007
    ....
  12. pmc Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae)
    Shannon C K Straub
    Department of Botany and Plant Pathology, Oregon State University
    Genome Biol Evol 5:1872-85. 2013
    ..syriaca and is likely nonfunctional. Furthermore, we found recent gene conversion of the mitochondrial rpoC2 pseudogene in Asclepias by the plastid gene, which reflects continued interaction of these genomes. ..
  13. doi request reprint Newly developed primers for complete ycf1 amplification in Pinus (Pinaceae) chloroplasts with possible family-wide utility
    Matthew Parks
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 2902, USA
    Am J Bot 98:e185-8. 2011
    ..Primers were designed to amplify the highly variable locus ycf1 from all 11 subsections of Pinus to facilitate plastome assemblies based on short sequence reads as well as future phylogenetic and population genetic analyses...
  14. doi request reprint Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon
    Erica G Bakker
    Department of Horticulture, 4017 Agriculture and Life Sciences Bldg, Oregon State University, Corvallis, OR 97331, USA
    Mol Ecol 18:2588-601. 2009
    ....
  15. doi request reprint Intraspecific chromosome number variation: a neglected threat to the conservation of rare plants
    Paul M Severns
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331 2902, USA
    Conserv Biol 22:1641-7. 2008
    ..We recommend screening rare plants for intraspecific chromosome variation before reintroductions or population augmentation projects are undertaken to safeguard against inadvertent mixtures of incompatible cytotypes...
  16. pmc Homomorphic ZW chromosomes in a wild strawberry show distinctive recombination heterogeneity but a small sex-determining region
    Jacob A Tennessen
    Department of Integrative Biology, Oregon State University, Corvallis, OR, 97331, USA
    New Phytol 211:1412-23. 2016
    ..The recombination dynamics of this nascent sex chromosome with a modestly diverged SDR may be typical of other dioecious plants. ..
  17. pmc Targeted sequence capture provides insight into genome structure and genetics of male sterility in a gynodioecious diploid strawberry, Fragaria vesca ssp. bracteata (Rosaceae)
    Jacob A Tennessen
    Department of Zoology, Oregon State University, Corvallis, Oregon 97331, USA
    G3 (Bethesda) 3:1341-51. 2013
    ..virginiana, suggesting either independent origins or translocation. The 57 genes in this region do not include protein families known to control male sterility and thus suggest alternate mechanisms for the suppression of male function. ..
  18. doi request reprint Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing
    Wambui Njuguna
    Department of Horticulture, Oregon State University, ALS 4017, Corvallis, OR 97331, USA
    Mol Phylogenet Evol 66:17-29. 2013
    ..Fragaria attained its circumboreal and amphitropical distribution within the past one to four million years and the rise of the octoploid clade is dated at 0.372-2.05 million years ago...
  19. pmc Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    Richard Cronn
    Pacific Northwest Research Station, USDA Forest Service, Corvallis, OR 97331, USA
    Nucleic Acids Res 36:e122. 2008
    ..056%, and conspicuous errors are evident from the assembly process. This efficient sequencing approach yields high-quality draft genomes and should have immediate applicability to genomes with comparable complexity...
  20. doi request reprint Implications of nonadventitious rhizome spread on reproduction, inbreeding, and conservation for a rare grassland legume
    Paul M Severns
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    J Hered 102:371-9. 2011
    ..Our study demonstrates that inferences associated with clonality, small population size, and inbreeding depression should be directly evaluated for rare vegetatively spreading plants...
  21. doi request reprint Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae
    Shannon C K Straub
    Department of Botany and Plant Pathology, Oregon State University, 2082 Cordley Hall, Corvallis, OR 97331, USA Electronic address
    Mol Phylogenet Evol 80:169-85. 2014
    ..Our phylogenomic approach has greatly advanced the resolution of one of the most perplexing radiations in Apocynaceae, providing the basis for study of convergent floral morphologies and their adaptive value. ..
  22. doi request reprint Fragaria: a genus with deep historical roots and ripe for evolutionary and ecological insights
    Aaron Liston
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 USA
    Am J Bot 101:1686-99. 2014
    ....
  23. pmc Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
    Shannon C K Straub
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
    BMC Genomics 12:211. 2011
    ..could be useful in characterizing the genome of a plant without prior genomic information and for development of genomic resources as a step toward further developing A. syriaca as a model in ecology and evolution...
  24. pmc Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
    Brian J Knaus
    USDA Forest Service, Pacific Northwest Research Station, Corvallis, OR 97331, USA
    BMC Ecol 11:10. 2011
    ..This allowed us to test a key assumption of conservation genetics, specifically, that the D-loop accurately reflects genealogical relationships and variation of the larger mitochondrial genome...
  25. ncbi request reprint Widespread genealogical nonmonophyly in species of Pinus subgenus Strobus
    John Syring
    Department of Biological and Physical Sciences, Montana State University Billings, Billings, Montana 59101, USA
    Syst Biol 56:163-81. 2007
    ..The absence of allelic coalescence is a severe constraint in the application of phylogenetic methods in Pinus, and taxa sharing similar life history traits with Pinus are likely to show species nonmonophyly using nuclear markers...