Sergei A Filichkin

Summary

Affiliation: Oregon State University
Country: USA

Publications

  1. doi request reprint Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress
    Sergei Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA Electronic address
    Curr Opin Plant Biol 24:125-35. 2015
  2. doi request reprint Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA Electronic address
    Mol Plant 8:207-27. 2015
  3. pmc Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Biol Direct 7:20. 2012
  4. pmc Expression, splicing, and evolution of the myosin gene family in plants
    Valera V Peremyslov
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
    Plant Physiol 155:1191-204. 2011
  5. pmc Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
    PLoS ONE 6:e16907. 2011
  6. pmc Genome-wide mapping of alternative splicing in Arabidopsis thaliana
    Sergei A Filichkin
    Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA
    Genome Res 20:45-58. 2010
  7. doi request reprint Cis-regulatory elements in plant cell signaling
    Henry D Priest
    Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA
    Curr Opin Plant Biol 12:643-9. 2009
  8. pmc Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
    Molly Megraw
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 Department of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon 97331 Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331
    Plant Cell 28:286-303. 2016
  9. ncbi request reprint Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Plant Biotechnol J 5:615-26. 2007

Collaborators

Detail Information

Publications9

  1. doi request reprint Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress
    Sergei Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA Electronic address
    Curr Opin Plant Biol 24:125-35. 2015
    ..In this review, we summarize recent studies describing the specific roles alternative splicing and RNA surveillance play in plant adaptation to environmental stresses and the regulation of the circadian clock. ..
  2. doi request reprint Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA Electronic address
    Mol Plant 8:207-27. 2015
    ..Constitutive activation of certain stress response networks in an NMD mutant could be linked to disequilibrium between functional and nonsense mRNAs. ..
  3. pmc Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Biol Direct 7:20. 2012
    ..Unproductive alternative splicing in circadian clock genes presents a special case study because the daily oscillations of protein expression levels require rapid and steep adjustments in mRNA levels...
  4. pmc Expression, splicing, and evolution of the myosin gene family in plants
    Valera V Peremyslov
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
    Plant Physiol 155:1191-204. 2011
    ..Phylogenetic reconstructions indicate that the last common ancestor of the angiosperms possessed two myosins VIII and five myosins XI, many of which underwent additional lineage-specific duplications...
  5. pmc Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America
    PLoS ONE 6:e16907. 2011
    ..Study of the cycling transcriptome in other plant species could thus help elucidate the similarities and differences and identify hubs of regulation common to monocot and dicot plants...
  6. pmc Genome-wide mapping of alternative splicing in Arabidopsis thaliana
    Sergei A Filichkin
    Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331, USA
    Genome Res 20:45-58. 2010
    ..Taken together, our results suggest that like in animals, NMD and RUST may be widespread in plants and may play important roles in regulating gene expression...
  7. doi request reprint Cis-regulatory elements in plant cell signaling
    Henry D Priest
    Department of Botany and Plant Pathology and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA
    Curr Opin Plant Biol 12:643-9. 2009
    ....
  8. pmc Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
    Molly Megraw
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 Department of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon 97331 Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331
    Plant Cell 28:286-303. 2016
    ..We conclude by noting areas of opportunity where new plant studies are imminently needed. ..
  9. ncbi request reprint Efficiency of gene silencing in Arabidopsis: direct inverted repeats vs. transitive RNAi vectors
    Sergei A Filichkin
    Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
    Plant Biotechnol J 5:615-26. 2007
    ..Both hIR and transitive methods are useful tools in plant biotechnology and genomics. The choice of vector will depend on specific objectives such as cloning throughput, number of events and degree of suppression required...