Jian Song

Summary

Affiliation: Los Alamos National Laboratory
Country: USA

Publications

  1. pmc The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context
    Jian Song
    Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
    BMC Biol 3:13. 2005
  2. doi request reprint Simultaneous pathogen detection and antibiotic resistance characterization using SNP-based multiplexed oligonucleotide ligation-PCR (MOL-PCR)
    Jian Song
    Biosecurity and Public Health B 7, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87544, USA
    Adv Exp Med Biol 680:455-64. 2010
  3. doi request reprint A rapid multiplex assay for nucleic acid-based diagnostics
    Alina Deshpande
    Decision Applications Division, Mail Stop K551, Los Alamos National Laboratory, Los Alamos, NM 87545, United States
    J Microbiol Methods 80:155-63. 2010
  4. pmc Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy
    Gary Xie
    Los Alamos National Laboratory, Los Alamos, New Mexico 87544, USA
    BMC Biol 2:15. 2004
  5. ncbi request reprint Development of rationally designed nucleic acid signatures for microbial pathogens
    Catherine A Cleland
    Bioscience Division, MS M888, Los Alamos National Laboratory, NM 87545, USA
    Expert Rev Mol Diagn 4:303-15. 2004
  6. ncbi request reprint SNPsFinder--a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
    Jian Song
    Bioscience Division, Los Alamos National Laboratory, NM 87545, USA
    Bioinformatics 21:2083-4. 2005
  7. doi request reprint Forensic signatures for Marburgviruses
    Jian Song
    Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, United States
    Forensic Sci Int 233:338-47. 2013
  8. pmc Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens
    Chris J Stubben
    Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA
    BMC Genomics 10:501. 2009
  9. ncbi request reprint Proteomic analysis of Bacillus anthracis Sterne vegetative cells
    Anthony W Francis
    Bioscience Division, Los Alamos National Laboratory, P O 1663, Los Alamos, NM 87545, USA
    Biochim Biophys Acta 1748:191-200. 2005
  10. pmc Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities
    Carol A Bonner
    The Computation Institute, University of Chicago, Chicago, Illinois 606371, USA
    Microbiol Mol Biol Rev 72:13-53, table of contents. 2008

Collaborators

Detail Information

Publications12

  1. pmc The TyrA family of aromatic-pathway dehydrogenases in phylogenetic context
    Jian Song
    Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
    BMC Biol 3:13. 2005
    ..This protein family typifies many that are challenging for bioinformatic analysis because of relatively modest sequence conservation and small size...
  2. doi request reprint Simultaneous pathogen detection and antibiotic resistance characterization using SNP-based multiplexed oligonucleotide ligation-PCR (MOL-PCR)
    Jian Song
    Biosecurity and Public Health B 7, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87544, USA
    Adv Exp Med Biol 680:455-64. 2010
    ..All probes were experimentally validated individually and in multiplexed assays, and minimal sets of multiplexed MOLigo probes were identified for simultaneous pathogen detection and antibiotic resistance characterization...
  3. doi request reprint A rapid multiplex assay for nucleic acid-based diagnostics
    Alina Deshpande
    Decision Applications Division, Mail Stop K551, Los Alamos National Laboratory, Los Alamos, NM 87545, United States
    J Microbiol Methods 80:155-63. 2010
    ..anthracis, Y. pestis, and F. tularensis. Combined with the ease and robustness of this assay, the results presented here show a strong potential of our assay for use in diagnostics and surveillance...
  4. pmc Inter-genomic displacement via lateral gene transfer of bacterial trp operons in an overall context of vertical genealogy
    Gary Xie
    Los Alamos National Laboratory, Los Alamos, New Mexico 87544, USA
    BMC Biol 2:15. 2004
    ..We have asked whether events of lateral gene transfer are sufficient to have obscured our ability to track the vertical genealogy that underpins tryptophan biosynthesis...
  5. ncbi request reprint Development of rationally designed nucleic acid signatures for microbial pathogens
    Catherine A Cleland
    Bioscience Division, MS M888, Los Alamos National Laboratory, NM 87545, USA
    Expert Rev Mol Diagn 4:303-15. 2004
    ....
  6. ncbi request reprint SNPsFinder--a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes
    Jian Song
    Bioscience Division, Los Alamos National Laboratory, NM 87545, USA
    Bioinformatics 21:2083-4. 2005
    ..SNPsFinder can generate PCR primers for all predicted SNP regions according to user's input parameters to facilitate experimental validation. The results from SNPsFinder analysis are accessible through the World Wide Web...
  7. doi request reprint Forensic signatures for Marburgviruses
    Jian Song
    Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, United States
    Forensic Sci Int 233:338-47. 2013
    ..Using these validated assays, we were able to provide accurate forensic analysis on 3 "unknown" Marburgviruses. These high-resolution forensic assays allow rapid and accurate genotyping of Marburgviruses for forensic investigations...
  8. pmc Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens
    Chris J Stubben
    Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, USA
    BMC Genomics 10:501. 2009
    ..e., conserved across multiple pathogen species) and novel virulence-associated genes that may serve as targets for broad-spectrum countermeasures...
  9. ncbi request reprint Proteomic analysis of Bacillus anthracis Sterne vegetative cells
    Anthony W Francis
    Bioscience Division, Los Alamos National Laboratory, P O 1663, Los Alamos, NM 87545, USA
    Biochim Biophys Acta 1748:191-200. 2005
    ..anthracis cells and, coupled with the recent proteomic catalogue of B. anthracis spore proteins, form a thorough summary of proteins expressed in the active and dormant stages of this organism...
  10. pmc Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities
    Carol A Bonner
    The Computation Institute, University of Chicago, Chicago, Illinois 606371, USA
    Microbiol Mol Biol Rev 72:13-53, table of contents. 2008
    ..Systematic procedures to manage and organize otherwise overwhelming amounts of data are demonstrated...
  11. ncbi request reprint Genome-wide identification and expression analysis of rice cell cycle genes
    Jing Guo
    Shandong Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong, 271018, China
    Plant Mol Biol 64:349-60. 2007
    ..Our results provide basic information to understand the mechanism of cell cycle regulation and the functions of the rice cell cycle genes...
  12. ncbi request reprint Three-step purification of gp96 from human liver tumor tissues suitable for isolation of gp96-bound peptides
    Song Dong Meng
    Department of Molecular Virology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, PR China
    J Immunol Methods 264:29-35. 2002
    ..This will inevitably trigger the search for antigenic-specific peptides bound to gp96. Here, we report the method in detail...