Jeffrey S McLean
Affiliation: J. Craig Venter Institute
- Quantification of electron transfer rates to a solid phase electron acceptor through the stages of biofilm formation from single cells to multicellular communitiesJeffrey S McLean
The J Craig Venter Institute, San Diego, CA, USA
Environ Sci Technol 44:2721-7. 2010..These data suggest a link between the ability of a surface to accept electrons and biofilm structure development...
- An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiomeAnna Edlund
Microbial and Environmental Genomics, J, Craig Venter Institute, 10355 Science Center Drive, CA 921 21 San Diego, USA
Microbiome 1:25. 2013....
- Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylumJeffrey S McLean
Microbial and Environmental Genomics, J Craig Venter Institute, San Diego, CA 92121, USA
Proc Natl Acad Sci U S A 110:E2390-9. 2013..Phylogenomic analysis of conserved single-copy genes confirms that TM6SC1 is a deeply branching phylum. ..
- Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platformJeffrey S McLean
Microbial and Environmental Genomics, J Craig Venter Institute, San Diego, California 92121, USA
Genome Res 23:867-77. 2013..Here we show for the first time that it also enables comparative genomic analysis of strain variation in a pathogen captured from complex biofilm samples in a healthcare facility...
- Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniquesJeffrey S McLean
Microbial and Environmental Genomics, The J Craig Venter Institute, San Diego, California, United States of America
PLoS ONE 7:e32219. 2012....
- Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopyJeffrey S McLean
Environmental Microbial Genomics, J Craig Venter Institute, 111 49 N Torrey Pines Rd, Suite 220, La Jolla, CA 92037, USA
ISME J 2:121-31. 2008....
- Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolismAnna Edlund
Microbial and Environmental Genomics, J Craig Venter Institute, La Jolla, CA, USA
ISME J 9:2605-19. 2015....
- The social structure of microbial community involved in colonization resistanceXuesong He
UCLA School of Dentistry, Los Angeles, CA, USA
ISME J 8:564-74. 2014..Furthermore, our results emphasize the importance of 'Facilitation' or positive interactions in the development of community-level functions, such as colonization resistance. ..
- High-Quality Draft Genome Sequence of Low-pH-Active Veillonella parvula Strain SHI-1, Isolated from Human Saliva within an In Vitro Oral Biofilm ModelAnna Edlund
Microbial and Environmental Genomics, J Craig Venter Institute, La Jolla, California, USA School of Dentistry, University of California, Los Angeles, Los Angeles, California, USA
Genome Announc 4:. 2016..The genome is composed of 7 contigs, for a total of 2,200,064 bp. ..
- Metagenome and Metatranscriptome Analyses Using Protein Family ProfilesCuncong Zhong
J Craig Venter Institute, La Jolla, California, United States of America
PLoS Comput Biol 12:e1004991. 2016..HMM-GRASPx is freely available online from http://sourceforge.net/projects/hmm-graspx. ..
- Phenotypic and Physiological Characterization of the Epibiotic Interaction Between TM7x and Its Basibiont ActinomycesBatbileg Bor
Section of Oral Biology, School of Dentistry, University of California, Los Angeles, CA, 90095, USA
Microb Ecol 71:243-55. 2016....
- Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilmsJeffrey S McLean
Pacific Northwest National Laboratory, MSIN P7 50, Richland, WA 99354, United States
J Microbiol Methods 74:47-56. 2008....
- NMR methods for in situ biofilm metabolism studiesPaul D Majors
Pacific Northwest National Laboratory, MSIN K8 98, Richland, WA 99352, USA
J Microbiol Methods 62:337-44. 2005..These results represent progress toward our ultimate goal of correlating time- and depth-resolved metabolism and mass transport with gene expression in live in situ biofilms using combined NMR/optical microscopy techniques...
- An estimate of biofilm properties using an acoustic microscopeMorris S Good
Laboratory Directed Research and Development Program, Northwest National Laboratory, Richland, WA, USA
IEEE Trans Ultrason Ferroelectr Freq Control 53:1637-48. 2006..The experimental acoustic and optical systems, methods used to estimate biofilm properties, and potential applications for the resulting data are discussed...
- c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensisMatthew J Marshall
Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America
PLoS Biol 4:e268. 2006..In the environment, such association of UO(2) nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O(2) or transport in soils and sediments...
- The influence of cultivation methods on Shewanella oneidensis physiology and proteome expressionDwayne A Elias
Department of Biochemistry, University of Missouri Columbia, Columbia, MO 65211, USA
Arch Microbiol 189:313-24. 2008..By decreasing cell to cell variability, higher quality samples will allow for the interpretive accuracy necessary for drawing conclusions relevant to microbial systems biology research...
- Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganismsYuri A Gorby
Pacific Northwest National Laboratory, Richland, WA 99352, USA
Proc Natl Acad Sci U S A 103:11358-63. 2006....
- NMR bioreactor development for live in-situ microbial functional analysisPaul D Majors
Biological Sciences Division, Pacific Northwest National Laboratory, 3335 Q Avenue, MSIN K8 98, Richland, WA 99352, USA
J Magn Reson 192:159-66. 2008..The advantages of live in-situ microbial metabolomics analysis and its complementariness with functional genomics/systems biology methods are discussed...
- Effects of varied pH, growth rate and temperature using controlled fermentation and batch culture on matrix assisted laser desorption/ionization whole cell protein fingerprintsDavid S Wunschel
Analytical Chemistry, Pacific Northwest National Laboratory, MS P8 08, PO Box 999, Richland WA 99352, USA
J Microbiol Methods 62:259-71. 2005..The effect of varying growth temperature on Y. enterocolitica was also examined. While the anticipated effects on phenotype were observed, the MALDI-MS technique provided the proper identification...
- Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beadsScott D Harvey
Pacific Northwest National Laboratory, P O Box 999 MSIN P8 50, Richland, WA 99352, USA
Anal Bioanal Chem 386:211-9. 2006..The binding assay results also indicated that further refinement of the surface deactivation procedure would enhance the performance of the imprinted substrate...