Mi Youn Brusniak

Summary

Affiliation: Institute for Systems Biology
Country: USA

Publications

  1. pmc Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
    Mi Youn Brusniak
    Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA
    BMC Bioinformatics 9:542. 2008
  2. pmc The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA 98103, USA
    Proteomics 11:154-8. 2011
  3. pmc PASSEL: the PeptideAtlas SRMexperiment library
    Terry Farrah
    Institute for Systems Biology, Seattle, WA 98109, USA
    Proteomics 12:1170-5. 2012
  4. pmc Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome
    Ulrike Kusebauch
    Institute for Systems Biology, Seattle, WA 98109, USA
    Cell 166:766-78. 2016
  5. pmc Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry
    Hamid Mirzaei
    Institute for Systems Biology, Seattle, Washington 98103, USA
    Mol Cell Proteomics 8:1934-46. 2009
  6. pmc TraML--a standard format for exchange of selected reaction monitoring transition lists
    Eric W Deutsch
    Institute for Systems Biology, Seattle, Washington 98109, USA
    Mol Cell Proteomics 11:R111.015040. 2012
  7. ncbi The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA, USA
    Proteomics 11:154-8. 2011

Collaborators

Detail Information

Publications7

  1. pmc Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
    Mi Youn Brusniak
    Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA
    BMC Bioinformatics 9:542. 2008
    ..These limitations, along with the array of choices, present a daunting prospect for biologists, and other researchers not trained in bioinformatics, who wish to use LC-MS-based quantitative proteomics...
  2. pmc The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA 98103, USA
    Proteomics 11:154-8. 2011
    ..Additionally, PIPE2 implements a framework within which new analysis procedures can be easily deployed and distributed over the World Wide Web. PIPE2 is available as a web service at http://pipe2.systemsbiology.net/...
  3. pmc PASSEL: the PeptideAtlas SRMexperiment library
    Terry Farrah
    Institute for Systems Biology, Seattle, WA 98109, USA
    Proteomics 12:1170-5. 2012
    ..Further, PASSELwill help in the assessment of proteotypic peptide performance in a wide array of samples containing the same peptide, as well as across multiple experimental protocols...
  4. pmc Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome
    Ulrike Kusebauch
    Institute for Systems Biology, Seattle, WA 98109, USA
    Cell 166:766-78. 2016
    ..The data are freely accessible as a resource at http://www.srmatlas.org/, and we demonstrate its utility by examining the network response to inhibition of cholesterol synthesis in liver cells and to docetaxel in prostate cancer lines. ..
  5. pmc Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry
    Hamid Mirzaei
    Institute for Systems Biology, Seattle, Washington 98103, USA
    Mol Cell Proteomics 8:1934-46. 2009
    ..Further use of the peptides for signal intensity normalization and retention time synchronization for selected reaction monitoring experiments is also demonstrated...
  6. pmc TraML--a standard format for exchange of selected reaction monitoring transition lists
    Eric W Deutsch
    Institute for Systems Biology, Seattle, Washington 98109, USA
    Mol Cell Proteomics 11:R111.015040. 2012
    ....
  7. ncbi The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage
    Hector Ramos
    Institute for Systems Biology, Seattle, WA, USA
    Proteomics 11:154-8. 2011
    ..Additionally, PIPE2 implements a framework within which new analysis procedures can be easily deployed and distributed over the World Wide Web. PIPE2 is available as a web service at http://pipe2.systemsbiology.net/...