Zhangjun Fei

Summary

Affiliation: Cornell University
Country: USA

Publications

  1. pmc Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit
    Stefania Grassi
    Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali Di, S, TE, B, A, Universita del Salento, Via Prov, le Lecce Monteroni, 73100 Lecce, Italy
    BMC Genomics 14:781. 2013
  2. pmc Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress
    Yanjie Xu
    Department of Ornamental Horticulture, China Agricultural University, Beijing 100193, China
    BMC Genomics 14:662. 2013
  3. pmc Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.)
    Di Shen
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
    BMC Genomics 14:721. 2013
  4. pmc Genome-wide identification and analysis of grape aldehyde dehydrogenase (ALDH) gene superfamily
    Yucheng Zhang
    College of Horticulture, Northwest A and F University, Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, People s Republic of China
    PLoS ONE 7:e32153. 2012
  5. pmc A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.)
    Aurora Diaz
    Instituto de Biologia Molecular y Celular de Plantas, Universidad Politecnica de Valencia Consejo Superior de Investigaciones Cientificas, Ciudad Politécnica de la Innovación C Ingeniero Fausto Elio s n, Valencia, Spain
    BMC Plant Biol 11:111. 2011
  6. pmc Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening
    Fabrizio Costa
    Department of Fruit Tree and Woody Plant Science, University of Bologna, Viale Fanin 46, 40121 Bologna, Italy
    BMC Plant Biol 10:229. 2010
  7. pmc RNA-Seq improves annotation of protein-coding genes in the cucumber genome
    Zhen Li
    College of Life Sciences, Beijing Normal University, 19 Xinjiekouwai Street, Beijing, 100875, China
    BMC Genomics 12:540. 2011
  8. pmc Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles
    Shaogui Guo
    National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
    BMC Genomics 12:454. 2011
  9. pmc Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon
    Christian Clepet
    URGV Plant Genomics, Unite de Recherche en Genomique Vegetale, UMR1165 ERL8196 INRA UEVE CNRS 2, rue Gaston Crémieux, 91057 Evry, France
    BMC Genomics 12:252. 2011
  10. pmc Gene expression in developing watermelon fruit
    W Patrick Wechter
    USDA, ARS, US Vegetable Lab, 2700 Savannah Highway, Charleston, SC, USA
    BMC Genomics 9:275. 2008

Collaborators

Detail Information

Publications51

  1. pmc Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit
    Stefania Grassi
    Dipartimento di Scienze e Tecnologie Biologiche ed Ambientali Di, S, TE, B, A, Universita del Salento, Via Prov, le Lecce Monteroni, 73100 Lecce, Italy
    BMC Genomics 14:781. 2013
    ..Our goal is to both clarify the expression profiles of carotenoid pathway genes and to identify candidate regulators and molecular targets for crop improvement...
  2. pmc Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress
    Yanjie Xu
    Department of Ornamental Horticulture, China Agricultural University, Beijing 100193, China
    BMC Genomics 14:662. 2013
    ....
  3. pmc Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.)
    Di Shen
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
    BMC Genomics 14:721. 2013
    ..Radish (Raphanus sativus L., 2n = 2× = 18) is an economically important vegetable crop worldwide. A large collection of radish expressed sequence tags (ESTs) has been generated but remains largely uncharacterized...
  4. pmc Genome-wide identification and analysis of grape aldehyde dehydrogenase (ALDH) gene superfamily
    Yucheng Zhang
    College of Horticulture, Northwest A and F University, Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, People s Republic of China
    PLoS ONE 7:e32153. 2012
    ..Although ALDHs have been systematically investigated in several plant species including Arabidopsis and rice, our knowledge concerning the ALDH genes, their evolutionary relationship and expression patterns in grape has been limited...
  5. pmc A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.)
    Aurora Diaz
    Instituto de Biologia Molecular y Celular de Plantas, Universidad Politecnica de Valencia Consejo Superior de Investigaciones Cientificas, Ciudad Politécnica de la Innovación C Ingeniero Fausto Elio s n, Valencia, Spain
    BMC Plant Biol 11:111. 2011
    ....
  6. pmc Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening
    Fabrizio Costa
    Department of Fruit Tree and Woody Plant Science, University of Bologna, Viale Fanin 46, 40121 Bologna, Italy
    BMC Plant Biol 10:229. 2010
    ....
  7. pmc RNA-Seq improves annotation of protein-coding genes in the cucumber genome
    Zhen Li
    College of Life Sciences, Beijing Normal University, 19 Xinjiekouwai Street, Beijing, 100875, China
    BMC Genomics 12:540. 2011
    ..We applied the new pipeline to the reassembled cucumber genome and included a comparison between our predicted protein-coding gene sets and a published set...
  8. pmc Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles
    Shaogui Guo
    National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
    BMC Genomics 12:454. 2011
    ....
  9. pmc Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon
    Christian Clepet
    URGV Plant Genomics, Unite de Recherche en Genomique Vegetale, UMR1165 ERL8196 INRA UEVE CNRS 2, rue Gaston Crémieux, 91057 Evry, France
    BMC Genomics 12:252. 2011
    ..It has served as a model system for sex determination and vascular biology studies. However, genomic resources currently available for melon are limited...
  10. pmc Gene expression in developing watermelon fruit
    W Patrick Wechter
    USDA, ARS, US Vegetable Lab, 2700 Savannah Highway, Charleston, SC, USA
    BMC Genomics 9:275. 2008
    ....
  11. pmc Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis
    Je Keun Rhee
    Graduate Program in Bioinformatics, Seoul National University, Seoul 151 744, Korea
    BMC Genomics 10:S29. 2009
    ..In the present study, we propose a kernel-based approach to efficiently identify core regulatory elements involved in specific biological processes using gene expression profiles...
  12. pmc Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
    Shaohua Zeng
    Key Laboratory of Pant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei 430074, China
    BMC Genomics 11:94. 2010
    ..Here, we report a set of expressed sequence tags (ESTs) and simple sequence repeats (SSRs) identified in these ESTs for E. sagittatum...
  13. pmc Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
    Zhangjun Fei
    Boyce Thompson Institute for Plant Research, Cornell University, USDA Robert W Holley Center for Agriculture and Health, Ithaca, NY 14853, USA
    Nucleic Acids Res 39:D1156-63. 2011
    ..The suite of tools and interfaces in TFGD allow intelligent data mining of recently released and continually expanding large-scale tomato functional genomics data sets. TFGD is available at http://ted.bti.cornell.edu...
  14. pmc iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
    Yi Zheng
    Department of Ornamental Horticulture, China Agricultural University, Beijing 100094, China
    BMC Bioinformatics 12:453. 2011
    ..In order to generate more accurate consensus sequences from ESTs, tools are needed to reduce or eliminate errors from de novo assemblies...
  15. pmc Genomic organization, phylogenetic comparison and differential expression of the SBP-box family genes in grape
    Hongmin Hou
    State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A and F University, Yangling, Shaanxi, China
    PLoS ONE 8:e59358. 2013
    ....
  16. doi request reprint Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation
    Je Min Lee
    Boyce Thompson Institute for Plant Research, Tower Rd, Cornell University Campus, Ithaca, NY 14853, USA
    Plant J 70:191-204. 2012
    ..Reduced expression of SlERF6 by RNAi enhanced both carotenoid and ethylene levels during fruit ripening, demonstrating an important role for SlERF6 in ripening, integrating the ethylene and carotenoid synthesis pathways...
  17. pmc Genome-wide identification and analysis of the TIFY gene family in grape
    Yucheng Zhang
    College of Horticulture, Northwest A and F University, Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, PR China
    PLoS ONE 7:e44465. 2012
    ..Nonetheless, knowledge concerning the specific expression patterns and evolutionary history of plant TIFY family members is limited, especially in a woody species such as grape...
  18. doi request reprint Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
    Silin Zhong
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA
    Nat Biotechnol 31:154-9. 2013
    ..Crop-improvement strategies could benefit by taking into account not only DNA sequence variation among plant lines, but also the information encoded in the epigenome...
  19. pmc Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    Shaogui Guo
    1National Engineering Research Center for Vegetables, Beijing 100097, China
    BMC Genomics 11:384. 2010
    ....
  20. pmc Plant MetGenMAP: an integrative analysis system for plant systems biology
    Je Gun Joung
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York 14853, USA
    Plant Physiol 151:1758-68. 2009
    ..Plant MetGenMAP is freely available at http://bioinfo.bti.cornell.edu/tool/MetGenMAP...
  21. doi request reprint Transcriptional dynamics of Phytophthora infestans during sequential stages of hemibiotrophic infection of tomato
    Andrea P Zuluaga
    Section of Plant Pathology and Plant Microbe Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA
    Mol Plant Pathol 17:29-41. 2016
    ..1 in Nicotiana benthamiana. Four effectors suppressed necrosis, suggesting that they might prolong the biotrophic phase. This study suggests that a complex regulation of effector expression modulates the outcome of the interaction. ..
  22. doi request reprint Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development
    Johannes Rohrmann
    Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D 14476 Potsdam, Germany
    Plant J 68:999-1013. 2011
    ..The results are discussed in terms of both programmed fruit ripening and development and the transcriptional and metabolic shifts that occur in parallel during these processes...
  23. doi request reprint Identification of genes differentially expressed in grapevine associated with resistance to Elsinoe ampelina through suppressive subtraction hybridization
    Min Gao
    College of Horticulture, Northwest A and F University, Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Yangling 712100, Shaanxi, PR China
    Plant Physiol Biochem 58:253-68. 2012
    ..The results imply that these up-regulated genes could be involved in grapevine responses against E. ampelina infection...
  24. doi request reprint Strand-specific RNA sequencing uncovers chloroplast ribonuclease functions
    Benoît Castandet
    Boyce Thompson Institute for Plant Research, Ithaca, NY 14853 1801, USA
    FEBS Lett 587:3096-101. 2013
    ..These results, together with previously published data, suggest that RNA-Seq represents a unique opportunity to decipher the roles of organellar ribonucleases and deepen our understanding of chloroplast gene expression. ..
  25. doi request reprint Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case
    Gloria Lopez-Casado
    Department of Plant Biology, Cornell University, Ithaca, NY, USA
    Proteomics 12:761-74. 2012
    ..We conclude that RNA-Seq provides a cost-effective and robust platform for protein identification and will be increasingly valuable to the field of proteomics...
  26. pmc Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development
    Yong qiang Wang
    Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14853, USA
    J Exp Bot 64:949-61. 2013
    ..This work provides reference datasets for future experimental study of chromoplast biogenesis, development, and regulation in plants...
  27. pmc Tomato Expression Database (TED): a suite of data presentation and analysis tools
    Zhangjun Fei
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA
    Nucleic Acids Res 34:D766-70. 2006
    ..TED can be accessed at http://ted.bti.cornell.edu...
  28. doi request reprint Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
    Je Gun Joung
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA
    Bioinformatics 25:387-93. 2009
    ..Here, we propose a method based on the probabilistic graphical model to identify the regulatory modules of miRNAs and the core regulatory motifs involved in their ability to regulate gene expression...
  29. pmc Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis
    Chloe Marchive
    Boyce Thompson Institute for Plant Research, Ithaca, New York 14853, USA
    Plant Physiol 151:905-24. 2009
    ....
  30. pmc A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein
    Jay N Worley
    Boyce Thompson Institute for Plant Research, Ithaca, NY, 14853 1801, USA
    BMC Genomics 17:229. 2016
    ..The individual contributions of each domain and whether they act redundantly is unknown...
  31. pmc Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation
    Antonio J Matas
    Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA
    Plant Cell 23:3893-910. 2011
    ..Finally, patterns of similar gene expression between tissues led to the characterization of a cuticle on the inner surface of the pericarp, demonstrating the utility of this approach as a platform for biological discovery...
  32. pmc Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information
    Je Gun Joung
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA
    BMC Bioinformatics 10:S34. 2009
    ..Here we demonstrate that gene expression profiles contain useful information in separating miRNA targets from non-targets...
  33. doi request reprint Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress
    Vijay Joshi
    Boyce Thompson Institute for Plant Research, Ithaca, NY 14853, USA
    Amino Acids 39:933-47. 2010
    ..A bioinformatics approach to understanding the transcriptional regulation of the genes involved in amino acid metabolism under abiotic stress is also presented...
  34. pmc A Single Amino Acid Substitution in an ORANGE Protein Promotes Carotenoid Overaccumulation in Arabidopsis
    Hui Yuan
    Robert W Holley Center for Agriculture and Health, U S Department of Agriculture Agricultural Research Service H Y, X Z, Y Y, T W T, L L, Plant Breeding and Genetics Section, School of Integrative Plant Science H Y, K O, T E S, X Z, C R, L L, Plant Biology Section, School of Integrative Plant Science M V P, and Boyce Thompson Institute for Plant Research Z F, Cornell University, Ithaca, New York 14853 Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, People s Republic of China Y L, Q X, X D University of Freiburg, Faculty of Biology II, D79104 Freiburg, Germany R W andNewe Ya ar Research Center, Agricultural Research Organization, Ramat Yishay 30095, Israel N C, A s, N K, J B, Japan
    Plant Physiol 169:421-31. 2015
    ..Our study demonstrates OR(His/Ala) as powerful tools for carotenoid enrichment in plants, and provides insights into the mechanisms underlying OR(His)-regulated carotenoid accumulation. ..
  35. pmc Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening
    Cuong V Nguyen
    Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853
    Plant Cell 26:585-601. 2014
    ..The gradient influenced general ripening activities beyond plastid development and was consistent with the easily observed yet poorly studied ripening gradient present in tomato and many fleshy fruits...
  36. ncbi request reprint Comprehensive EST analysis of tomato and comparative genomics of fruit ripening
    Zhangjun Fei
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA
    Plant J 40:47-59. 2004
    ....
  37. pmc The transcriptome of the baculovirus Autographa californica multiple nucleopolyhedrovirus in Trichoplusia ni cells
    Yun Ru Chen
    Boyce Thompson Institute at Cornell University, Ithaca, New York, USA
    J Virol 87:6391-405. 2013
    ..Combined, these data provide an emerging global picture of the organization and regulation of AcMNPV transcription through the infection cycle...
  38. doi request reprint Analysis of the tomato leaf transcriptome during successive hemibiotrophic stages of a compatible interaction with the oomycete pathogen Phytophthora infestans
    Andrea P Zuluaga
    Section of Plant Pathology and Plant Microbe Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA
    Mol Plant Pathol 17:42-54. 2016
    ..The biotrophic phase was characterized by the induction of many defence systems, which were either insufficient, evaded or suppressed by the pathogen. ..
  39. doi request reprint Dissecting the molecular signatures of apical cell-type shoot meristems from two ancient land plant lineages
    Margaret H Frank
    Department of Plant Biology, Cornell University, Ithaca, NY, 14853, USA
    New Phytol 207:893-904. 2015
    ..The results are discussed in light of the functional significance and evolutionary success of the AC-type SAM within the embryophytes...
  40. pmc Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins
    Marina A Pombo
    Boyce Thompson Institute for Plant Research, Ithaca, NY, USA
    Genome Biol 15:492. 2014
    ..The interaction of tomato with Pseudomonas syringae pv. tomato is an established model system for understanding the molecular basis of these plant immune responses...
  41. pmc Characterization of Erysiphe necator-responsive genes in Chinese Wild Vitis quinquangularis
    Min Gao
    College of Horticulture, Key Laboratory of Horticultural Plant Biology and Germplasm Innovation in Northwest China, Ministry of Agriculture, Northwest A and F University, Yangling, Shaanxi 712100, China E Mails M G J N S Z C J State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A and F University, Yangling, Shaanxi 712100, China
    Int J Mol Sci 13:11497-519. 2012
    ..The ESTs reported here provide new clues to understand the disease-resistance mechanism in Chinese wild grapevine species and may enable us to investigate E. necator-responsive genes involved in PM resistance in grapevine germplasm...
  42. ncbi request reprint ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development
    Rob Alba
    Boyce Thompson Institute for Plant Research, Cornell University Campus, Ithaca, NY, USA
    Plant J 39:697-714. 2004
    ....
  43. pmc Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis)
    Xiangjun Zhou
    Robert W Holley Center for Agriculture and Health, USDA ARS, Cornell University, Ithaca, NY 14853, USA
    BMC Plant Biol 11:169. 2011
    ..Despite extensive studies of this process, the genetic basis and the regulatory control of chloroplast biogenesis and development remain to be elucidated...
  44. pmc Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development
    Richard J Pattison
    Boyce Thompson Institute for Plant Research, Ithaca, New York 14853 R J P, F C, Y Z, Z F, C C United States Department of Agriculture Agricultural Research Service, Robert W Holley Center for Agriculture and Health, Ithaca, New York 14853 Z F Department of Horticulture and Crop Science, Ohio State University, Wooster, Ohio 44691 E v d K andPlant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York 14853 C C
    Plant Physiol 168:1684-701. 2015
    ..Major alterations in the expression of hormone metabolic and signaling components illustrate the complex hormonal control underpinning fruit formation, with intricate spatiotemporal variations suggesting separate regulatory programs. ..
  45. pmc A dynamic evolutionary and functional landscape of plant phased small interfering RNAs
    Yi Zheng
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA
    BMC Biol 13:32. 2015
    ..However, the evolution and function of these novel siRNAs in plant species remain largely unexplored...
  46. doi request reprint Suppressing Sorbitol Synthesis Substantially Alters the Global Expression Profile of Stress Response Genes in Apple (Malus domestica) Leaves
    Ting Wu
    Institute for Horticultural Plants, China Agricultural University, Beijing 100193, PR China Department of Horticulture, Cornell University, Ithaca, NY 14853, USA
    Plant Cell Physiol 56:1748-61. 2015
    ..This suggests that sorbitol plays a role in the responses of apple trees to abiotic and biotic stresses. ..
  47. doi request reprint Blocking the QB-binding site of photosystem II by tenuazonic acid, a non-host-specific toxin of Alternaria alternata, activates singlet oxygen-mediated and EXECUTER-dependent signalling in Arabidopsis
    Shiguo Chen
    Boyce Thompson Institute for Plant Research, Ithaca, NY, 14853 1801, USA College of Life Science, Nanjing Agricultural University, Nanjing, 210095, China
    Plant Cell Environ 38:1069-80. 2015
    ..Under these conditions, the programmed cell death response triggered by (1)O₂-mediated and EX-dependent signalling is superimposed by other events that also contribute to lesion formation...
  48. pmc Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features
    Sara L Zimmer
    Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA
    Genetics 179:125-36. 2008
    ....
  49. doi request reprint Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation
    Matthew J Milner
    Robert W Holley Center for Agriculture and Health, USDA ARS, Cornell University, Ithaca, NY, 14853, USA Department of Plant Biology, Cornell University, Ithaca, NY, 14853, USA
    Plant J 78:398-410. 2014
    ..caerulescens and copy number variation appears to be the main reason for high NcNramp1 gene expression underlying the increased Cd accumulation in the Ganges ecotype. ..
  50. doi request reprint Stable transformation and reverse genetic analysis of Penium margaritaceum: a platform for studies of charophyte green algae, the immediate ancestors of land plants
    Iben Sørensen
    Department of Plant Biology, Cornell University, Ithaca, NY, 14853, USA
    Plant J 77:339-51. 2014
    ..This new functional genomics platform has broad potential applications, including studies of plant organismal biology and the evolutionary innovations required for transition from aquatic to terrestrial habitats. ..
  51. pmc A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters
    Yun Ru Chen
    Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA
    Plant Methods 8:41. 2012
    ..abstract:..