Hossein Khiabanian

Summary

Affiliation: Columbia University
Country: USA

Publications

  1. pmc Signs of the 2009 influenza pandemic in the New York-Presbyterian Hospital electronic health records
    Hossein Khiabanian
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 5:. 2010
  2. pmc Differences in patient age distribution between influenza A subtypes
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e6832. 2009
  3. pmc Reassortment patterns in Swine influenza viruses
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e7366. 2009
  4. pmc ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data
    Hossein Khiabanian
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, NY, USA
    BMC Res Notes 3:147. 2010
  5. pmc Genetics of follicular lymphoma transformation
    Laura Pasqualucci
    Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA Electronic address
    Cell Rep 6:130-40. 2014
  6. pmc The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome
    Ana Carolina da Silva Almeida
    Institute for Cancer Genetics, Columbia University, New York, New York, USA
    Nat Genet 47:1465-70. 2015
  7. pmc Discovering disease associations by integrating electronic clinical data and medical literature
    Antony B Holmes
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 6:e21132. 2011
  8. pmc De novo transcriptome reconstruction and annotation of the Egyptian rousette bat
    Albert K Lee
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, 1130 St Nicholas Ave, New York, USA
    BMC Genomics 16:1033. 2015
  9. pmc Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration
    Anne Catrin Uhlemann
    Department of Medicine, Columbia University Medical Center, New York, New York, USA
    MBio 8:. 2017
  10. pmc Transcriptome reconstruction and annotation of cynomolgus and African green monkey
    Albert Lee
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, NY 10032, USA
    BMC Genomics 15:846. 2014

Collaborators

  • Raul Rabadan
  • Antony B Holmes
  • Laura Pasqualucci
  • Peter R Davies
  • Joan Guitart
  • Luca Arcaini
  • Maurilio Ponzoni
  • Feng Liu
  • Luca Laurenti
  • Vladimir Trifonov
  • Robin Foa
  • Adolfo Ferrando
  • Charles G Mullighan
  • Gustavo Palacios
  • Davide Rossi
  • Teresa Palomero
  • Anne Catrin Uhlemann
  • Albert K Lee
  • Ana Carolina da Silva Almeida
  • Oliver Elliott
  • Francesco Abate
  • Albert Lee
  • Giulia Fabbri
  • Pieter Van Vlierberghe
  • Franklin D Lowy
  • J Ross Fitzgerald
  • Justin R Knox
  • Sean B Sullivan
  • Paul R McAdam
  • Megan E B Jones
  • Jonathan S Towner
  • Brian R Amman
  • Maarten H Vermeer
  • Elyse R Nagle
  • Mariano Sanchez-Lockhart
  • Estela Martínez-Escala
  • Kirsten A Kulcsar
  • Cornelis P Tensen
  • Xiaoyu Jiang
  • Guo Yun Yu
  • Mi Yeon Kim
  • Concha Nicolas
  • Alberto Ambesi-Impiombato
  • Milagros Balbin
  • Izidore S Lossos
  • Elias Campo
  • Jeffrey Kugelman
  • Govind Bhagat
  • Maddalena Allegretta
  • Olivier A Bernard
  • J Erika Haydu
  • Miguel A Piris
  • Lucile Couronné
  • Arianne Perez-Garcia
  • Zachary Carpenter
  • Travis Warren
  • Christian Bastard
  • Elyse Nagle
  • Roberto Marasca
  • Silvia Rasi
  • Sara Monti
  • Riccardo Dalla-Favera
  • David Oscier
  • Valter Gattei
  • Jing Ma
  • Anna Guarini
  • Gianluca Gaidano
  • Daniela Capello
  • Marco Fangazio
  • Ernesto Gargiulo
  • Francesco Bertoni
  • Marco Paulli
  • Adina Grunn
  • Stefania Cresta
  • Luigi M Larocca
  • Francesco Forconi
  • Jules Meijerink
  • Peter H Wiernik
  • Mireia Castillo
  • Tom Taghon
  • Markus Pisecker
  • Rob Pieters
  • Sara Gonzalez-Garcia
  • Jacob M Rowe
  • Joni Van der Meulen
  • Jozef Gecz
  • Linda Zuurbier
  • Edwin Sonneveld
  • Claire Schwab
  • Sabine Strehl

Detail Information

Publications13

  1. pmc Signs of the 2009 influenza pandemic in the New York-Presbyterian Hospital electronic health records
    Hossein Khiabanian
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 5:. 2010
    ....
  2. pmc Differences in patient age distribution between influenza A subtypes
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e6832. 2009
    ..Recently, a novel H1N1 virus has spread around the world. Preliminary reports suggest that this new strain causes symptomatic disease in the younger population in a similar fashion to the seasonal H1N1 strains...
  3. pmc Reassortment patterns in Swine influenza viruses
    Hossein Khiabanian
    Department of Biomedical Informatics and Center for Computational Biology and Bioinformatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 4:e7366. 2009
    ..Moreover, we find that one of the polymerase segments (PB1), reassorted in the strains responsible for the last two human pandemics, also reassorts frequently...
  4. pmc ParMap, an algorithm for the identification of small genomic insertions and deletions in nextgen sequencing data
    Hossein Khiabanian
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, NY, USA
    BMC Res Notes 3:147. 2010
    ..This complicates the detection of genomic variations, especially, small insertions and deletions...
  5. pmc Genetics of follicular lymphoma transformation
    Laura Pasqualucci
    Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA Department of Pathology and Cell Biology, Columbia University, New York, NY 10032, USA Electronic address
    Cell Rep 6:130-40. 2014
    ..The genomic profile of tFL shares similarities with that of germinal center B cell-type de novo DLBCL but also displays unique combinations of altered genes with diagnostic and therapeutic implications. ..
  6. pmc The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome
    Ana Carolina da Silva Almeida
    Institute for Cancer Genetics, Columbia University, New York, New York, USA
    Nat Genet 47:1465-70. 2015
    ....
  7. pmc Discovering disease associations by integrating electronic clinical data and medical literature
    Antony B Holmes
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
    PLoS ONE 6:e21132. 2011
    ..In particular, we report a statistically significant association between Kawasaki disease and diagnosis of autistic disorder...
  8. pmc De novo transcriptome reconstruction and annotation of the Egyptian rousette bat
    Albert K Lee
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, 1130 St Nicholas Ave, New York, USA
    BMC Genomics 16:1033. 2015
    ....
  9. pmc Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration
    Anne Catrin Uhlemann
    Department of Medicine, Columbia University Medical Center, New York, New York, USA
    MBio 8:. 2017
    ..Our study demonstrates extensive local and international routes of transmission for a major MSSA clone despite the lack of substantial antibiotic resistance...
  10. pmc Transcriptome reconstruction and annotation of cynomolgus and African green monkey
    Albert Lee
    Department of Biomedical Informatics, Columbia University College of Physicians and Surgeons, New York, New York, NY 10032, USA
    BMC Genomics 15:846. 2014
    ..Unlike the human transcriptome, the transcriptomes of major NHP animal models are yet to be comprehensively annotated...
  11. pmc Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas
    Teresa Palomero
    1 Institute for Cancer Genetics, Columbia University, New York, New York, USA 2 Department of Pathology, Columbia University Medical Center, New York, New York, USA 3
    Nat Genet 46:166-70. 2014
    ....
  12. pmc Analysis of the chronic lymphocytic leukemia coding genome: role of NOTCH1 mutational activation
    Giulia Fabbri
    Institute for Cancer Genetics and the Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA
    J Exp Med 208:1389-401. 2011
    ..These results provide initial data on the complexity of the CLL coding genome and identify a dysregulated pathway of diagnostic and therapeutic relevance...
  13. pmc PHF6 mutations in T-cell acute lymphoblastic leukemia
    Pieter Van Vlierberghe
    Institute for Cancer Genetics, Columbia University Medical Center, New York, New York, USA
    Nat Genet 42:338-42. 2010
    ..Overall, these results identify PHF6 as a new X-linked tumor suppressor in T-ALL and point to a strong genetic interaction between PHF6 loss and aberrant expression of TLX transcription factors in the pathogenesis of this disease...