Erich M Schwarz

Summary

Affiliation: California Institute of Technology
Country: USA

Publications

  1. pmc Genomic classification of protein-coding gene families
    Erich M Schwarz
    Division of Biology, 156 29, California Institute of Technology, Pasadena, CA 91125, USA
    WormBook . 2005
  2. pmc WormBase: better software, richer content
    Erich M Schwarz
    Division of Biology, 156 29 California Institute of Technology, Pasadena, CA, 91125, USA
    Nucleic Acids Res 34:D475-8. 2006
  3. pmc WormBase 2012: more genomes, more data, new website
    Karen Yook
    Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
    Nucleic Acids Res 40:D735-41. 2012
  4. pmc Scaffolding a Caenorhabditis nematode genome with RNA-seq
    Ali Mortazavi
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Genome Res 20:1740-7. 2010
  5. pmc Identification of DVA interneuron regulatory sequences in Caenorhabditis elegans
    Carmie Puckett Robinson
    Division of Biology and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA, USA
    PLoS ONE 8:e54971. 2013
  6. pmc Functional transcriptomics of a migrating cell in Caenorhabditis elegans
    Erich M Schwarz
    Division of Biology and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA
    Proc Natl Acad Sci U S A 109:16246-51. 2012
  7. doi request reprint Searching WormBase for information about Caenorhabditis elegans
    Erich M Schwarz
    California Institute of Technology, Pasadena, California, USA
    Curr Protoc Bioinformatics . 2006
  8. doi request reprint C. elegans Stress-Induced Sleep Emerges from the Collective Action of Multiple Neuropeptides
    Ravi D Nath
    Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853 2703, USA
    Curr Biol 26:2446-55. 2016
  9. pmc Multigenome DNA sequence conservation identifies Hox cis-regulatory elements
    Steven G Kuntz
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Genome Res 18:1955-68. 2008
  10. doi request reprint cGAL, a temperature-robust GAL4-UAS system for Caenorhabditis elegans
    Han Wang
    Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA
    Nat Methods . 2016

Collaborators

Detail Information

Publications17

  1. pmc Genomic classification of protein-coding gene families
    Erich M Schwarz
    Division of Biology, 156 29, California Institute of Technology, Pasadena, CA 91125, USA
    WormBook . 2005
    ..Some metazoan proteins conserved in other nematodes are absent from C. elegans. Conversely, 9% of C. elegans protein-coding genes are conserved among all metazoa or eukaryotes, yet have no known functions...
  2. pmc WormBase: better software, richer content
    Erich M Schwarz
    Division of Biology, 156 29 California Institute of Technology, Pasadena, CA, 91125, USA
    Nucleic Acids Res 34:D475-8. 2006
    ....
  3. pmc WormBase 2012: more genomes, more data, new website
    Karen Yook
    Division of Biology 156 29, California Institute of Technology, Pasadena, CA 91125, USA
    Nucleic Acids Res 40:D735-41. 2012
    ..We report on the growth of our database and on our work in keeping pace with the growing demand for data, efforts to anticipate the requirements of users and new collaborations with the larger science community...
  4. pmc Scaffolding a Caenorhabditis nematode genome with RNA-seq
    Ali Mortazavi
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Genome Res 20:1740-7. 2010
    ..elegans that are likely to encode regulatory sequences or previously unknown ncRNAs. Genomic and cDNA sequencing followed by joint assembly is a rapid and useful strategy for biological analysis...
  5. pmc Identification of DVA interneuron regulatory sequences in Caenorhabditis elegans
    Carmie Puckett Robinson
    Division of Biology and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA, USA
    PLoS ONE 8:e54971. 2013
    ..The existence of a complete genome sequence for C. elegans and draft genomes of other nematodes let us use comparative genomics to identify regulatory sequences directing expression in the DVA interneuron...
  6. pmc Functional transcriptomics of a migrating cell in Caenorhabditis elegans
    Erich M Schwarz
    Division of Biology and Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125, USA
    Proc Natl Acad Sci U S A 109:16246-51. 2012
    ..Our results provide an extensive catalog of genes that act in a migrating cell, identify unique molecular functions involved in nematode cell migration, and suggest similar functions in humans...
  7. doi request reprint Searching WormBase for information about Caenorhabditis elegans
    Erich M Schwarz
    California Institute of Technology, Pasadena, California, USA
    Curr Protoc Bioinformatics . 2006
    ..The WormBase developers group actively invites suggestions for improvements from the database users. WormBase's source code and underlying database are freely available for local installation and modification...
  8. doi request reprint C. elegans Stress-Induced Sleep Emerges from the Collective Action of Multiple Neuropeptides
    Ravi D Nath
    Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA Howard Hughes Medical Institute, Cornell University, Ithaca, NY 14853 2703, USA
    Curr Biol 26:2446-55. 2016
    ..These overexpression results raise the possibility that individual components of sleep might be specified by individual neuropeptides or combinations of neuropeptides. ..
  9. pmc Multigenome DNA sequence conservation identifies Hox cis-regulatory elements
    Steven G Kuntz
    Division of Biology, California Institute of Technology, Pasadena, California 91125, USA
    Genome Res 18:1955-68. 2008
    ..Our findings suggest that ungapped sequence comparisons can predict regulatory elements genome-wide...
  10. doi request reprint cGAL, a temperature-robust GAL4-UAS system for Caenorhabditis elegans
    Han Wang
    Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA
    Nat Methods . 2016
    ..elegans from 15 to 25 °C. We demonstrate this system's utility in transcriptional reporter analysis, site-of-action experiments and exogenous transgene expression; and we provide a basic driver and effector toolkit...
  11. pmc Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey
    Yen Ping Hsueh
    Division of Biology and Biological Engineering, Howard Hughes Medical Institute, California Institute of Technology, Pasadena, United States
    elife 6:. 2017
    ..We propose that A. oligospora likely evolved the means to use olfactory mimicry to attract its nematode prey through the olfactory neurons in C. elegans and related species...
  12. pmc WormBase 2007
    Anthony Rogers
    Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK
    Nucleic Acids Res 36:D612-7. 2008
    ..Improved search and display tools, wider cross-species comparisons and extended ontologies are some of the features that will help scientists extend their research and take advantage of other nematode species genome sequences...
  13. pmc WormBase: new content and better access
    Tamberlyn Bieri
    Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA
    Nucleic Acids Res 35:D506-10. 2007
    ..Access to and searching WormBase has become more dependable and flexible via multiple mirror sites and indexing through Google...
  14. pmc WormBase: a comprehensive data resource for Caenorhabditis biology and genomics
    Nansheng Chen
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 33:D383-9. 2005
    ..Internally, we have restructured the database models to rationalize the representation of genes and to prepare the system to accept the genome sequences of three additional Caenorhabditis species over the coming year...
  15. pmc WormBase: a multi-species resource for nematode biology and genomics
    Todd W Harris
    Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA
    Nucleic Acids Res 32:D411-7. 2004
    ..These advances continue to increase the utility of WormBase for C.elegans researchers, as well as for those researchers exploring problems in functional and comparative genomics in the context of a powerful genetic system...
  16. ncbi request reprint Genetic interactions among cortical malformation genes that influence susceptibility to convulsions in C. elegans
    Cody J Locke
    Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487 0344, USA
    Brain Res 1120:23-34. 2006
    ..Thus, interactions among gene products with LIS-1 may mediate intrinsic thresholds of neuronal synchrony...
  17. ncbi request reprint Transducing touch in Caenorhabditis elegans
    Miriam B Goodman
    Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, California 94305, USA
    Annu Rev Physiol 65:429-52. 2003
    ..elegans, with an emphasis on insights into their function derived from mutation. We also review the neuronal cell types in which these channels might be expressed and mediate mechanotransduction...