Joseph F Petrosino

Summary

Affiliation: Baylor College of Medicine
Country: USA

Publications

  1. pmc Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes
    Xiang Qin
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
    BMC Microbiol 12:135. 2012
  2. pmc Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus
    Sarah K Highlander
    Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA
    BMC Microbiol 7:99. 2007
  3. pmc Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence
    Joseph F Petrosino
    Department of Molecular Virology and Microbiology, Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, BCM280, Houston, TX 77030, USA
    J Bacteriol 188:6977-85. 2006
  4. pmc Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium
    Sandor E Karpathy
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America Department of Microbiology and Molecular Genetics, University of Texas Medical School, Houston, Texas, United States of America
    PLoS ONE 2:e659. 2007
  5. pmc Genetic and Environmental Determinants of Otitis Media in an Indigenous Filipino Population
    Regie Lyn P Santos-Cortez
    Center for Statistical Genetics, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA
    Otolaryngol Head Neck Surg 155:856-862. 2016
  6. pmc Identification of novel and cross-species seroreactive proteins from Bacillus anthracis using a ligation-independent cloning-based, SOS-inducible expression system
    Brian D McWilliams
    Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
    Microb Pathog 53:250-8. 2012
  7. doi request reprint Initial insights into bacterial succession during human decomposition
    Embriette R Hyde
    Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX, USA
    Int J Legal Med 129:661-71. 2015
  8. pmc Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032
    Jason Gioia
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
    PLoS ONE 2:e928. 2007
  9. pmc Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome
    Cintia S de Paiva
    Department of Ophthalmology, Baylor College of Medicine, Houston, TX, USA
    Sci Rep 6:23561. 2016
  10. pmc Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome
    Varduhi Petrosyan
    Graduate Program in Diagnostic Genetics, School of Health Professions, The University of Texas M D Anderson Cancer Center, Houston, Texas, USA
    Genome Announc 4:. 2016

Collaborators

Detail Information

Publications33

  1. pmc Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes
    Xiang Qin
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
    BMC Microbiol 12:135. 2012
    ..faecium strains in clinical environments. Systematic study of the molecular epidemiology and pathogenesis of E. faecium has been hindered by the lack of closed, complete E. faecium genomes that can be used as references...
  2. pmc Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus
    Sarah K Highlander
    Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA
    BMC Microbiol 7:99. 2007
    ..Epidemiological studies suggest that USA300 is more virulent than other CA-MRSA. The genetic determinants that render virulence and dominance to USA300 remain unclear...
  3. pmc Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence
    Joseph F Petrosino
    Department of Molecular Virology and Microbiology, Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, BCM280, Houston, TX 77030, USA
    J Bacteriol 188:6977-85. 2006
    ..Nonconservative differences between the two strains likely include the LVS attenuating mutation(s)...
  4. pmc Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium
    Sandor E Karpathy
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America Department of Microbiology and Molecular Genetics, University of Texas Medical School, Houston, Texas, United States of America
    PLoS ONE 2:e659. 2007
    ..These findings indicate that F. nucleatum subsp. polymorphum is proficient at horizontal gene transfer and that exchange with the Firmicutes, particularly the Clostridia, is common...
  5. pmc Genetic and Environmental Determinants of Otitis Media in an Indigenous Filipino Population
    Regie Lyn P Santos-Cortez
    Center for Statistical Genetics, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA
    Otolaryngol Head Neck Surg 155:856-862. 2016
    ..To identify genetic and environmental risk factors for otitis media in an indigenous Filipino population...
  6. pmc Identification of novel and cross-species seroreactive proteins from Bacillus anthracis using a ligation-independent cloning-based, SOS-inducible expression system
    Brian D McWilliams
    Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
    Microb Pathog 53:250-8. 2012
    ..These results will contribute to the future selection of targets in antigenicity and protection studies as one or more of these proteins may prove to be worthy of inclusion in future vaccine preparations...
  7. doi request reprint Initial insights into bacterial succession during human decomposition
    Embriette R Hyde
    Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX, USA
    Int J Legal Med 129:661-71. 2015
    ..However, more cadavers sampled through multiple seasons are necessary to assess major trends in bacterial succession. ..
  8. pmc Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032
    Jason Gioia
    Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
    PLoS ONE 2:e928. 2007
    ....
  9. pmc Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome
    Cintia S de Paiva
    Department of Ophthalmology, Baylor College of Medicine, Houston, TX, USA
    Sci Rep 6:23561. 2016
    ....
  10. pmc Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome
    Varduhi Petrosyan
    Graduate Program in Diagnostic Genetics, School of Health Professions, The University of Texas M D Anderson Cancer Center, Houston, Texas, USA
    Genome Announc 4:. 2016
    ..We report here the first complete genome sequence ofS. mitisstrain SVGS_061, which caused VGS shock syndrome, to help elucidate the pathogenesis of severe VGS infection. ..
  11. pmc Decreased microbiota diversity associated with urinary tract infection in a trial of bacterial interference
    Deborah Horwitz
    Section of Infectious Diseases, Department of Medicine, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA Department of Surgery, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA Center for Innovations in Quality, Effectiveness, and Safety, Michael E DeBakey Veterans Affairs Medical Center, 2002 Holcombe Blvd, Houston, TX, 77030, USA
    J Infect 71:358-67. 2015
    ..We hypothesized that colonizing the bladder with a benign Escherichia coli strain (E. coli HU2117, a derivative of E. coli 83972) would prevent CAUTI in older, catheterized adults...
  12. doi request reprint Characterization of the rat oral microbiome and the effects of dietary nitrate
    Embriette R Hyde
    Integrative Molecular and Biomedical Sciences Training Program, Baylor College of Medicine, Houston, TX 77030, USA Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX 77030, USA
    Free Radic Biol Med 77:249-57. 2014
    ..Understanding individual changes in human oral microbiome may offer novel dietary approaches to restore NO availability and blood pressure. ..
  13. pmc Metagenomic pyrosequencing and microbial identification
    Joseph F Petrosino
    Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA
    Clin Chem 55:856-66. 2009
    ..The Human Microbiome Project has ushered in a new era for human metagenomics and high-throughput next-generation sequencing strategies...
  14. pmc Potential role of gastrointestinal microbiota composition in prostate cancer risk
    E Susan Amirian
    Dan L Duncan Cancer Center, Baylor College of Medicine, One Baylor Plaza MS BCM305, 77030 Houston, TX, USA
    Infect Agent Cancer 8:42. 2013
    ....
  15. doi request reprint Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants: A Case-Control Study
    Kohei Hasegawa
    1Department of Emergency Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 2Department of Pediatrics, Emory University School of Medicine, Atlanta, GA 3Department of Medicine, Boston Children s Hospital, Boston, MA 4Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX 5Department of Molecular Virology and Microbiology, and Pediatrics, Baylor College of Medicine, Houston, TX 6Department of Pediatrics, University of Louisville, Louisville, KY and 7Alfred I duPont Hospital for Children, Wilmington, DE
    Pediatr Infect Dis J . 2016
    ..Little is known about the relationship of airway microbiota with bronchiolitis in infants. We aimed to identify nasal airway microbiota profiles and to determine their association with the likelihood of bronchiolitis in infants...
  16. pmc Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring
    Shelly A Buffington
    Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030, USA Memory and Brain Research Center, Baylor College of Medicine, Houston, TX 77030, USA
    Cell 165:1762-75. 2016
    ..video abstract. ..
  17. pmc Gut Microbiome Associates With Lifetime Cardiovascular Disease Risk Profile Among Bogalusa Heart Study Participants
    Tanika N Kelly
    From the Department of Epidemiology, School of Public Health and Tropical Medicine T N K, L A B, H H, J Z, J H and Department of Medicine, School of Medicine L A B, J H, Tulane University, New Orleans, LA The Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, TX N J A, J F P and Department of Pediatrics and Medicine, University of Mississippi Medical Center, Jackson, MS A C
    Circ Res 119:956-64. 2016
    ..Few studies have systematically assessed the influence of gut microbiota on cardiovascular disease (CVD) risk...
  18. pmc Middle ear microbiome differences in indigenous Filipinos with chronic otitis media due to a duplication in the A2ML1 gene
    Regie Lyn P Santos-Cortez
    Department of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, Houston, TX, 77030, USA
    Infect Dis Poverty 5:97. 2016
    ....
  19. ncbi request reprint Promise and Pragmatism in Clinical Microbiome Research
    Nadim J Ajami
    Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA
    Mini Rev Med Chem 16:222-4. 2015
    ....
  20. doi request reprint Composition and function of the undernourished neonatal mouse intestinal microbiome
    Geoffrey A Preidis
    Section of Gastroenterology, Hepatology and Nutrition, Department of Pediatrics, Baylor College of Medicine and Texas Children s Hospital, Houston, TX 77030, USA Electronic address
    J Nutr Biochem 26:1050-7. 2015
    ..Thus, the microbiome of an undernourished host may perpetuate states of poor nutrition via multiple mechanisms. ..
  21. pmc Sequence type 1 group B Streptococcus, an emerging cause of invasive disease in adults, evolves by small genetic changes
    Anthony R Flores
    Department of Pediatrics and Molecular Virology and Microbiology, MD Anderson Cancer Center, Houston, TX 77030
    Proc Natl Acad Sci U S A 112:6431-6. 2015
    ..These data reveal that phenotypic diversity among ST-1 GBS is mainly driven by small genetic changes rather than extensive recombination, thereby extending knowledge into how pathogens adapt to humans. ..
  22. pmc Transmissible microbial and metabolomic remodeling by soluble dietary fiber improves metabolic homeostasis
    Baokun He
    Department of Biochemistry and Molecular Biology, The University of Texas Health Science Center at Houston, 6431 Fannin St, Houston, TX 77030
    Sci Rep 5:10604. 2015
    ..These studies elucidate beneficial roles of RM-dependent microbial remodeling in metabolic homeostasis, and showcase prevalent health-promoting potentials of dietary fibers. ..
  23. pmc Murine model of chemotherapy-induced extraintestinal pathogenic Escherichia coli translocation
    Sabrina I Green
    Molecular Virology and Microbiology Department, Baylor College of Medicine, Houston, Texas, USA
    Infect Immun 83:3243-56. 2015
    ..This is the first report of a chemotherapy-based animal model of ExPEC translocation in cancerous mice, a system that can be readily used to identify important virulence factors for this process. ..
  24. pmc Metagenomic analysis of nitrate-reducing bacteria in the oral cavity: implications for nitric oxide homeostasis
    Embriette R Hyde
    Integrative Molecular and Biomedical Sciences Graduate Program, Baylor College of Medicine, Houston, Texas, United States of America Alkek Center for Metagenomics and Microbiome Research, Baylor College of Medicine, Houston, Texas, United States of America
    PLoS ONE 9:e88645. 2014
    ..These findings may also provide mechanistic evidence for the oral systemic link. Our results provide a possible new therapeutic target and paradigm for NO restoration in humans by specific oral bacteria. ..
  25. pmc The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition
    Embriette R Hyde
    Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, United States of America
    PLoS ONE 8:e77733. 2013
    ..Our results are preliminary and add to a larger emerging data set; a more comprehensive study is needed to further dissect the role of bacteria in human decomposition. ..
  26. pmc Development and accuracy of quantitative real-time polymerase chain reaction assays for detection and quantification of enterotoxigenic Escherichia coli (ETEC) heat labile and heat stable toxin genes in travelers' diarrhea samples
    Bonnie P Youmans
    Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas Alkek Center for Metagenomics and Microbiome Research, Houston, Texas Center for Infectious Diseases, School of Public Health, University of Texas Health Science Center, Houston, Texas Department of Medicine, Baylor College of Medicine, Division of Infectious Diseases, University of Texas Medical School, St Luke s Episcopal Hospital, Houston, Texas
    Am J Trop Med Hyg 90:124-32. 2014
    ..The qPCR assays are unique in their sensitivity and ability to quantify the three toxin genes in clinical stool samples...
  27. pmc Bioactivity and bioavailability of ginsenosides are dependent on the glycosidase activities of the A/J mouse intestinal microbiome defined by pyrosequencing
    Tao Niu
    Department of Pharmacological and Pharmaceutical Sciences, College of Pharmacy, University of Houston, 1441 Moursund Street, Houston, Texas, 77030, USA
    Pharm Res 30:836-46. 2013
    ..To investigate the ability of bacteria in the intestinal microbiome to convert naturally occurring primary ginsenosides in red ginseng extract to active secondary ginsenosides...
  28. pmc Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays
    Petra Matejková
    Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Alkek N1619, Houston, TX 77030, USA
    BMC Microbiol 8:76. 2008
    ..pallidum remains the enigmatic pathogen, since no virulence factors have been identified and the pathogenesis of the disease is poorly understood. Increasing rates of new syphilis cases per year have been observed recently...
  29. pmc Stress-induced beta-lactam antibiotic resistance mutation and sequences of stationary-phase mutations in the Escherichia coli chromosome
    Joseph F Petrosino
    Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030 3411, USA
    J Bacteriol 191:5881-9. 2009
    ..The important evolutionary implication is that not only loss-of-function mutations but also change-of-function mutations can be generated by this mechanism...
  30. pmc Adaptive amplification and point mutation are independent mechanisms: evidence for various stress-inducible mutation mechanisms
    P J Hastings
    Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA
    PLoS Biol 2:e399. 2004
    ..We suggest that the availability of alternative pathways for genetic/evolutionary adaptation and clonal expansion under stress may be exploited during processes ranging from the evolution of drug resistance to cancer progression...
  31. pmc Chromosomal system for studying AmpC-mediated beta-lactam resistance mutation in Escherichia coli
    Joseph F Petrosino
    Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030 3411, USA
    Antimicrob Agents Chemother 46:1535-9. 2002
    ..coli chromosome. These cells acquire spontaneous recombination- and SOS response-independent beta-lactam resistance mutations in ampD. This chromosomal system is useful for studying mutation mechanisms that promote antibiotic resistance...
  32. ncbi request reprint Francisella tularensis genomics and proteomics
    Richard W Titball
    Defence Science and Technology Laboratory, Porton Down, Salisbury, SP4 0JQ, UK
    Ann N Y Acad Sci 1105:98-121. 2007
    ..These proteins might be exploited as components of vaccines or diagnostic systems...
  33. pmc The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse
    Tim Durfee
    DNASTAR, Inc, Madison, Wisconsin 53705, USA
    J Bacteriol 190:2597-606. 2008
    ..Finally, while the sequence confirms most of the reported alleles, the sequence of deoR is wild type, necessitating reexamination of the assumed basis for the high transformability of DH10B...