- Colonyzer: automated quantification of micro-organism growth characteristics on solid agarConor Lawless
Centre for Integrated Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Newcastle University, Campus for Ageing and Vitality, Newcastle Upon Tyne NE45PL, UK
BMC Bioinformatics 11:287. 2010..g. the logistic growth model). In order to parametrize such a model, a robust image analysis tool capable of capturing a wide range of cell densities from plate photographs is required...
- Correction of radiolabel pulse-chase data by a mathematical model: application to mitochondrial turnover studiesSatomi Miwa
Centre for Integrated Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Newcastle University, Newcastle upon Tyne NE4 5PL, UK
Biochem Soc Trans 38:1322-8. 2010..This example has important implications not only for similar pulse-chase experiments, but also in a more general context where comparable types of data are generated...
- Fast Bayesian parameter estimation for stochastic logistic growth modelsJonathan Heydari
Newcastle University, UK
Biosystems 122:55-72. 2014....
- CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation modelsYuhui Chen
Institute for Ageing and Health, Centre for Integrated Systems Biology of Ageing and Nutrition at Newcastle, UK
Brief Bioinform 11:278-89. 2010..In this article, we describe these two systems and demonstrate their integrated use with an example workflow to estimate the parameters of a simple model of Saccharomyces cerevisiae growth on agar plates...