Arthur Chun Chieh Shih

Summary

Affiliation: Academia Sinica
Country: Taiwan

Publications

  1. doi request reprint A new image flux conduction model and its application to selective image smoothing
    C J Sze
    Institute of Information Science, Academia Sinica, Taipei, Taiwan R O C
    IEEE Trans Image Process 10:296-306. 2001
  2. doi request reprint A new iterated two-band diffusion equation: theory and its application
    Arthur Chun Chieh Shih
    Inst of Inf Sci, Acad Sinica, Taipei, Taiwan
    IEEE Trans Image Process 12:466-76. 2003
  3. pmc Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
  4. pmc SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 7:103. 2006
  5. pmc Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 8:63. 2007
  6. pmc Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination
    Wen yu Liu
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:3979-84. 2013
  7. pmc Assembler for de novo assembly of large genomes
    Te Chin Chu
    Institute of Information Science, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:E3417-24. 2013
  8. ncbi request reprint GS-Aligner: a novel tool for aligning genomic sequences using bit-level operations
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 20:1299-309. 2003
  9. ncbi request reprint Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
  10. pmc Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    Li Ching Hsieh
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Physiol 151:2120-32. 2009

Collaborators

  • Wen Hsiung Li
  • Daryi Wang
  • Shu Miaw Chaw
  • Hsuan Cheng Huang
  • Chiou Rong Sheue
  • Shin Han Shiu
  • Tzyy Jen Chiou
  • Te Chin Chu
  • Chen Hua Lu
  • Wen yu Liu
  • Yao Ming Chang
  • Tzi Yuan Wang
  • Dong Yan Tsai
  • Mei Yeh Jade Lu
  • Tsunglin Liu
  • Greg C Lee
  • Li Ching Hsieh
  • Kuo Hsuan Hung
  • Shin Tang Su
  • I Ying Lin
  • Shih Ying Wu
  • Tong Cheng Wang
  • Cheng Han Chung
  • Kuo I Lin
  • Sean Chun Chang Chen
  • Maurice Sun Ben Ku
  • Di Rong Chen
  • Yeh Hwa Wu
  • Hsin Hung Lin
  • Chun Ping Yu
  • C J Sze
  • Stella Maris Chen
  • Hui Wen Yang
  • Sean C C Chen
  • Meng Ni Shen
  • Maurice S B Ku
  • Chih Kuan Chen
  • Yueh Chin Wu
  • Chi Tang Mao
  • Jeng Yi Li
  • Huei Mien Ke
  • Hsin Liang Chen
  • Shao Pei Chou
  • Mei Yeh J Lu
  • Hsing Yi Cho
  • Sz Kai Ruan
  • Ya Wen Tsai
  • Kuo Yen Hung
  • Ming Che Shih
  • Huang Mo Sung
  • Yu Hsiang Chen
  • Teh Yang Hwa
  • Yo Chia Chen
  • Chun Chieh A Shih
  • Wei Yi Lin
  • D T Lee
  • June Wei Chen
  • Shu I Lin
  • Ching Ying Tseng
  • H Y Liao
  • K C Fan

Detail Information

Publications15

  1. doi request reprint A new image flux conduction model and its application to selective image smoothing
    C J Sze
    Institute of Information Science, Academia Sinica, Taipei, Taiwan R O C
    IEEE Trans Image Process 10:296-306. 2001
    ..Experimental results obtained using both synthetic signals and real images have demonstrated that the proposed model could effectively handle the selective image smoothing problem...
  2. doi request reprint A new iterated two-band diffusion equation: theory and its application
    Arthur Chun Chieh Shih
    Inst of Inf Sci, Acad Sinica, Taipei, Taiwan
    IEEE Trans Image Process 12:466-76. 2003
    ..Based on the proposed scheme, the smoothing operation can be applied to the correct targets. Experimental results show that our new approach is really efficient in noise removing...
  3. pmc Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
    ..Due to the difficulty in culture and lack of a genome database, it is not easy to gain a global understanding of the glycosyl hydrolases (GHs) produced by this anaerobic fungus...
  4. pmc SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 7:103. 2006
    ..Thus, a tool that allows cross comparison of the alignment results obtained by different tools simultaneously could help a biologist evaluate their correctness and accuracy...
  5. pmc Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 8:63. 2007
    ..Although there are several tools available for visualization of very long sequence alignments, few of them are applicable to the alignments of many sequences...
  6. pmc Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination
    Wen yu Liu
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:3979-84. 2013
    ..Our dataset provides an opportunity for hypothesizing the timing of regulatory actions, particularly in the context of KS development...
  7. pmc Assembler for de novo assembly of large genomes
    Te Chin Chu
    Institute of Information Science, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:E3417-24. 2013
    ....
  8. ncbi request reprint GS-Aligner: a novel tool for aligning genomic sequences using bit-level operations
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 20:1299-309. 2003
    ..The program and data can be downloaded from http://pondside.uchicago.edu/~lilab/ and http://webcollab.iis.sinica.edu.tw/~biocom...
  9. ncbi request reprint Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
    ..Our observations support the proposition of Richly and Leister (2004) that "primary insertions of organellar DNAs are large and then diverge and fragment over evolutionary time."..
  10. pmc Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    Li Ching Hsieh
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Physiol 151:2120-32. 2009
    ..This study represents a comprehensive expression profiling of Pi-responsive small RNAs and advances our understanding of the regulation of Pi homeostasis mediated by small RNAs...
  11. pmc Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 104:6283-8. 2007
    ....
  12. doi request reprint GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events
    Te Chin Chu
    Institute of Information Science, Academia Sinica, National Taiwan University, Taipei, Taiwan
    Bioinformatics 25:2188-93. 2009
    ..Global alignment tools are even less appropriate for these tasks since most of them are designed to align the conserved regions between sequences in a consistent order, i.e. they do not consider rearrangement events...
  13. pmc Uncovering MicroRNA Regulatory Hubs that Modulate Plasma Cell Differentiation
    Dong Yan Tsai
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Sci Rep 5:17957. 2015
    ..Together, we catalogue the complex roadmap of miRNAs and their functional interplay in collaboratively directing PC differentiation. ..
  14. doi request reprint The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    Shu Miaw Chaw
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 25:603-15. 2008
    ..The evolutionary origin and invasion/duplication mechanism of the Bpu sequences in Cycas mtDNA are hypothesized and discussed...
  15. pmc Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis
    Yao Ming Chang
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 115 Institute of Bioagricultural Science, National Chiayi University, Chiayi, Taiwan 600
    Plant Physiol 160:165-77. 2012
    ..This comprehensive data set will be useful for studying M/BS differentiation in regulation and function...