Heinz Stockinger

Summary

Affiliation: Swiss Institute of Bioinformatics
Country: Switzerland

Publications

  1. pmc Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support
    Heinz Stockinger
    SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland
    Nucleic Acids Res 42:W436-41. 2014
  2. pmc Experience using web services for biological sequence analysis
    Heinz Stockinger
    Swiss Institute of Bioinformatics, Vital IT Group, Lausanne, Switzerland
    Brief Bioinform 9:493-505. 2008
  3. pmc Selectome update: quality control and computational improvements to a database of positive selection
    Sebastien Moretti
    Department of Ecology and Evolution, Biophore, University of Lausanne, CH 1015 Lausanne, Switzerland, Evolutionary Bioinformatics Group, SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland, Vital IT Group, SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland, Computational Phylogenetics group, SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland, Division of Biosciences, Institute of Structural and Molecular Biology, University College London, Gower Street, London, WC1E 6BT, UK and Swiss National Supercomputing Centre CSCS, CH 6900, Lugano, Switzerland
    Nucleic Acids Res 42:D917-21. 2014
  4. pmc ExPASy: SIB bioinformatics resource portal
    Panu Artimo
    Vital IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland
    Nucleic Acids Res 40:W597-603. 2012
  5. pmc Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree
    Linda Dib
    Department of Ecology and Evolution, University of Lausanne, Lausanne, 1015, Switzerland
    BMC Bioinformatics 16:394. 2015
  6. doi request reprint TRAL: tandem repeat annotation library
    Elke Schaper
    Vital IT Group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, Department of Computer Science, ETH Zurich, 8092 Zurich, Switzerland, Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, Services and Support for Science IT, University of Zurich, 8057 Zurich, Switzerland and Institute of Applied Simulations, School of Life Sciences und Facility Management, Zurich University of Applied Sciences, 8820 Wädenswil, Switzerland Vital IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, Department of Computer Science, ETH Zurich, 8092 Zurich, Switzerland, Graz University of Technology, Institute of Molecular Biotechnology, Pavia
    Bioinformatics 31:3051-3. 2015
  7. ncbi request reprint gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution
    Sebastien Moretti
    Department of Ecology and Evolution, University of Lausanne and SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland
    Stud Health Technol Inform 175:59-68. 2012

Collaborators

Detail Information

Publications7

  1. pmc Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support
    Heinz Stockinger
    SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland
    Nucleic Acids Res 42:W436-41. 2014
    ..org, SIB's Bioinformatics Resource Portal. This article provides an overview of the scientific and training resources SIB has consistently been offering to the life science community for more than 15 years. ..
  2. pmc Experience using web services for biological sequence analysis
    Heinz Stockinger
    Swiss Institute of Bioinformatics, Vital IT Group, Lausanne, Switzerland
    Brief Bioinform 9:493-505. 2008
    ..We briefly review main technological approaches as well as best practice hints that are useful for both users and developers. Finally, syntactic and semantic data integration issues with multiple web services are discussed...
  3. pmc Selectome update: quality control and computational improvements to a database of positive selection
    Sebastien Moretti
    Department of Ecology and Evolution, Biophore, University of Lausanne, CH 1015 Lausanne, Switzerland, Evolutionary Bioinformatics Group, SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland, Vital IT Group, SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland, Computational Phylogenetics group, SIB Swiss Institute of Bioinformatics, CH 1015 Lausanne, Switzerland, Division of Biosciences, Institute of Structural and Molecular Biology, University College London, Gower Street, London, WC1E 6BT, UK and Swiss National Supercomputing Centre CSCS, CH 6900, Lugano, Switzerland
    Nucleic Acids Res 42:D917-21. 2014
    ..A total of 6810 gene trees have some evidence of positive selection. Finally, the web interface has been improved to be more responsive and to facilitate searches and browsing. ..
  4. pmc ExPASy: SIB bioinformatics resource portal
    Panu Artimo
    Vital IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland
    Nucleic Acids Res 40:W597-603. 2012
    ..The portal is aimed for both expert users and people who are not familiar with a specific domain in life sciences. The new web interface provides, in particular, visual guidance for newcomers to ExPASy...
  5. pmc Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree
    Linda Dib
    Department of Ecology and Evolution, University of Lausanne, Lausanne, 1015, Switzerland
    BMC Bioinformatics 16:394. 2015
    ..These approaches are not appropriate to assess the performance of combinatorial and probabilistic methods that look for coevolving positions in nucleotide or amino acid sequences...
  6. doi request reprint TRAL: tandem repeat annotation library
    Elke Schaper
    Vital IT Group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, Department of Computer Science, ETH Zurich, 8092 Zurich, Switzerland, Graz University of Technology, Institute of Molecular Biotechnology, 8010 Graz, Austria, Department of Biosystems Science and Engineering, ETH Zurich, 4058 Basel, Switzerland, Services and Support for Science IT, University of Zurich, 8057 Zurich, Switzerland and Institute of Applied Simulations, School of Life Sciences und Facility Management, Zurich University of Applied Sciences, 8820 Wädenswil, Switzerland Vital IT group, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, SIB Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland, Department of Computer Science, ETH Zurich, 8092 Zurich, Switzerland, Graz University of Technology, Institute of Molecular Biotechnology, Pavia
    Bioinformatics 31:3051-3. 2015
    ..Currently, more than 40 sequence tandem repeat detectors are published, providing heterogeneous, partly complementary, partly conflicting results...
  7. ncbi request reprint gcodeml: a Grid-enabled tool for detecting positive selection in biological evolution
    Sebastien Moretti
    Department of Ecology and Evolution, University of Lausanne and SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland
    Stud Health Technol Inform 175:59-68. 2012
    ..Although we report on results for gcodeml, our approach is applicable and customisable to related problems in biology or other scientific domains...