Affiliation: Stockholm University
- Quality criteria for finding genes with high mRNA-protein expression correlation and coexpression correlationGabriel Ostlund
Stockholm Bioinformatics Centre, Science for Life Laboratory, Solna, Sweden
Gene 497:228-36. 2012..34 for coexpression and 0.49 for coexpression when restricted to functionally coupled genes. Our methodology can thus identify subsets for which the mRNA levels are expected to be the strongest correlated with protein levels...
- InParanoid 7: new algorithms and tools for eukaryotic orthology analysisGabriel Ostlund
Department of Biochemistry and Biophysics, Stockholm Bioinformatics Centre, AlbaNova University Centre, Stockholm University, SE 10691 Stockholm, Sweden
Nucleic Acids Res 38:D196-203. 2010..To facilitate data exchange and comparisons among ortholog databases, we have developed and are making available two XML schemas: SeqXML for the input sequences and OrthoXML for the output ortholog clusters...
- Network-based Identification of novel cancer genesGabriel Ostlund
Stockholm Bioinformatics Centre, Stockholm University, Stockholm, Sweden
Mol Cell Proteomics 9:648-55. 2010..Our study provides a ranked list of high priority targets for further studies in cancer research. Supplemental material is included...