Enrique Blanco

Summary

Affiliation: Hospital del Mar
Country: Spain

Publications

  1. ncbi Using geneid to identify genes
    Enrique Blanco
    Centre de Regulacio Genomica, Institut Municipal d Investigacio Medica, Universitat Pompeu Fabra, Barcelona, Spain
    Curr Protoc Bioinformatics . 2007
  2. pmc ABS: a database of Annotated regulatory Binding Sites from orthologous promoters
    Enrique Blanco
    Grup de Recerca en Informàtica Biomèdica, Institut Municipal d Investigació Mèdica Universitat Pompeu Fabra Centre de Regulació Genòmica C Doctor Aiguader 80, 08003 Barcelona, Spain
    Nucleic Acids Res 34:D63-7. 2006
  3. pmc Multiple non-collinear TF-map alignments of promoter regions
    Enrique Blanco
    Grup d Algorísmica i Genètica, Departament de Llenguatges i Sistemes Informatics, Universitat Politecnica de Catalunya, c Jordi Girona, 1 3, Barcelona, Catalonia, Spain
    BMC Bioinformatics 8:138. 2007
  4. pmc Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs
    Enrique Blanco
    Departament de Genetica, and Institut de Biomedicina de la Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Catalonia, Spain
    BMC Dev Biol 10:94. 2010
  5. pmc Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila
    Enrique Blanco
    Departament de Genètica and Institut de Biomedicina de la Universitat de Barcelona, Universitat de Barcelona, Barcelona, Catalonia, Spain
    Genome Biol 9:R134. 2008
  6. pmc Absence of canonical marks of active chromatin in developmentally regulated genes
    Sílvia Pérez-Lluch
    Centre for Genomic Regulation, Barcelona, Spain
    Nat Genet 47:1158-67. 2015
  7. pmc CBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomes
    Enrique Blanco
    Departament de Genètica and Institut de Biomedicina IBUB, Universitat de Barcelona, Av, Diagonal 643, 08028, Barcelona, Spain
    BMC Genomics 13:688. 2012
  8. pmc Use of ChIP-Seq data for the design of a multiple promoter-alignment method
    Ionas Erb
    Bioinformatics and Genomics Program, Centre for Genomic Regulation and UPF, 08003 Barcelona, Spain
    Nucleic Acids Res 40:e52. 2012
  9. pmc Cabut/dTIEG associates with the transcription factor Yorkie for growth control
    Marina Ruiz-Romero
    Departament de Genetica, Facultat de Biologia and Institut de Biomedicina IBUB de la Universitat de Barcelona, Barcelona, Spain
    EMBO Rep 16:362-9. 2015
  10. pmc Transcription factor map alignment of promoter regions
    Enrique Blanco
    Research Group in Biomedical Informatics, Institut Municipal d Investigació Mèdica Universitat Pompeu Fabra, Barcelona, Catalonia, Spain
    PLoS Comput Biol 2:e49. 2006

Collaborators

Detail Information

Publications14

  1. ncbi Using geneid to identify genes
    Enrique Blanco
    Centre de Regulacio Genomica, Institut Municipal d Investigacio Medica, Universitat Pompeu Fabra, Barcelona, Spain
    Curr Protoc Bioinformatics . 2007
    ..Geneid software is in the public domain, and it is undergoing constant development. It is easy to install and use. Exhaustive benchmark evaluations show that geneid compares favorably with other existing gene finding tools...
  2. pmc ABS: a database of Annotated regulatory Binding Sites from orthologous promoters
    Enrique Blanco
    Grup de Recerca en Informàtica Biomèdica, Institut Municipal d Investigació Mèdica Universitat Pompeu Fabra Centre de Regulació Genòmica C Doctor Aiguader 80, 08003 Barcelona, Spain
    Nucleic Acids Res 34:D63-7. 2006
    ..0 of ABS includes a customizable generator of artificial datasets based on the known sites contained in the collection and an evaluation tool to aid during the training and the assessment of motif-finding programs...
  3. pmc Multiple non-collinear TF-map alignments of promoter regions
    Enrique Blanco
    Grup d Algorísmica i Genètica, Departament de Llenguatges i Sistemes Informatics, Universitat Politecnica de Catalunya, c Jordi Girona, 1 3, Barcelona, Catalonia, Spain
    BMC Bioinformatics 8:138. 2007
    ....
  4. pmc Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs
    Enrique Blanco
    Departament de Genetica, and Institut de Biomedicina de la Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Catalonia, Spain
    BMC Dev Biol 10:94. 2010
    ..Drosophila imaginal discs, which are the larval primordia of adult cuticular structures, are capable of undergoing regenerative growth after transplantation and in vivo culture into the adult abdomen...
  5. pmc Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila
    Enrique Blanco
    Departament de Genètica and Institut de Biomedicina de la Universitat de Barcelona, Universitat de Barcelona, Barcelona, Catalonia, Spain
    Genome Biol 9:R134. 2008
    ..They bind to specific regions of DNA and direct the post-translational modifications of histones, playing a role in the dynamics of chromatin structure...
  6. pmc Absence of canonical marks of active chromatin in developmentally regulated genes
    Sílvia Pérez-Lluch
    Centre for Genomic Regulation, Barcelona, Spain
    Nat Genet 47:1158-67. 2015
    ..In the latter case, regulation by transcription factors would have a comparatively more important regulatory role than chromatin marks...
  7. pmc CBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomes
    Enrique Blanco
    Departament de Genètica and Institut de Biomedicina IBUB, Universitat de Barcelona, Av, Diagonal 643, 08028, Barcelona, Spain
    BMC Genomics 13:688. 2012
    ....
  8. pmc Use of ChIP-Seq data for the design of a multiple promoter-alignment method
    Ionas Erb
    Bioinformatics and Genomics Program, Centre for Genomic Regulation and UPF, 08003 Barcelona, Spain
    Nucleic Acids Res 40:e52. 2012
    ..Not only has this interesting biological consequences, it also allows us to conclude that any method that is trained on the ortholog data set will result in functionally more informative alignments...
  9. pmc Cabut/dTIEG associates with the transcription factor Yorkie for growth control
    Marina Ruiz-Romero
    Departament de Genetica, Facultat de Biologia and Institut de Biomedicina IBUB de la Universitat de Barcelona, Barcelona, Spain
    EMBO Rep 16:362-9. 2015
    ..Our results imply that Cbt is a novel partner of Yki that is required as a transcriptional co-activator in growth control. ..
  10. pmc Transcription factor map alignment of promoter regions
    Enrique Blanco
    Research Group in Biomedical Informatics, Institut Municipal d Investigació Mèdica Universitat Pompeu Fabra, Barcelona, Catalonia, Spain
    PLoS Comput Biol 2:e49. 2006
    ....
  11. pmc Hnf1alpha (MODY3) controls tissue-specific transcriptional programs and exerts opposed effects on cell growth in pancreatic islets and liver
    Joan Marc Servitja
    Genomic Programming of Beta Cells Laboratory, Institut d Investigacions Biomediques August Pi i Sunyer IDIBAPS, Barcelona, Spain
    Mol Cell Biol 29:2945-59. 2009
    ..Collectively, these findings show that Hnf1alpha governs broad, highly tissue-specific genetic programs in pancreatic islets and liver and reveal key consequences of Hnf1a deficiency relevant to the pathophysiology of monogenic diabetes...
  12. pmc Reconsidering the evolution of eukaryotic selenoproteins: a novel nonmammalian family with scattered phylogenetic distribution
    Sergi Castellano
    Grup de Recerca en Informàtica Biomèdica, Institut Municipal d Investigacio Medica, Universitat Pompeu Fabra, Dr Aiguader 80, 08003 Barcelona, Catalonia, Spain
    EMBO Rep 5:71-7. 2004
    ..Our data indicate a scattered evolutionary distribution of selenoproteins in eukaryotes, and suggest that, contrary to the picture emerging from data available so far, other taxa-specific selenoproteins probably exist...
  13. pmc ORegAnno: an open-access community-driven resource for regulatory annotation
    Obi L Griffith
    Canada s Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC V5Z 4S6, Canada
    Nucleic Acids Res 36:D107-13. 2008
    ..All data are freely available through search pages, XML data dumps or web services at: http://www.oreganno.org...
  14. pmc Transcriptional network controlled by the trithorax-group gene ash2 in Drosophila melanogaster
    Sergi Beltran
    Departament de Genetica, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain
    Proc Natl Acad Sci U S A 100:3293-8. 2003
    ..This work represents the first microarray analysis, to our knowledge, of a trithorax-group gene...