M G Claros

Summary

Country: Spain

Publications

  1. pmc Why assembling plant genome sequences is so challenging
    Manuel Gonzalo Claros
    Department of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain
    Biology (Basel) 1:439-59. 2012
  2. pmc Pyroptosis and adaptive immunity mechanisms are promptly engendered in mesenteric lymph-nodes during pig infections with Salmonella enterica serovar Typhimurium
    Rodrigo Prado Martins
    Grupo de Genómica y Mejora Animal, Departamento de Genetica, Facultad de Veterinaria, Universidad de Cordoba, Campus de Rabanales, Edificio Gregor Mendel C5, 14071, Cordoba, Spain
    Vet Res 44:120. 2013
  3. pmc De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray
    Hicham Benzekri
    IFAPA Centro El Toruño, IFAPA, Consejería de Agricultura y Pesca, 11500 El Puerto de Santa Maria, Cadiz, Spain
    BMC Genomics 15:952. 2014
  4. pmc Reprogramming of gene expression during compression wood formation in pine: coordinated modulation of S-adenosylmethionine, lignin and lignan related genes
    David P Villalobos
    Departamento de Biologia Molecular y Bioquimica, Facultad de Ciencias, Universidad de Malaga, Campus Universitario de Teatinos, 29071, Malaga, Spain
    BMC Plant Biol 12:100. 2012
  5. pmc EuroPineDB: a high-coverage web database for maritime pine transcriptome
    Noé Fernández-Pozo
    Departamento de Biologia Molecular y Bioquimica, Facultad de Ciencias, Campus de Teatinos s n, Universidad de Malaga, 29071 Malaga, Spain
    BMC Genomics 12:366. 2011
  6. pmc SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
    Juan Falgueras
    Departamento de Lenguajes y Ciencias de la Computación, Universidad de Malaga, Malaga, Spain
    BMC Bioinformatics 11:38. 2010
  7. pmc PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data
    Victoria Martin-Requena
    Computer Architecture Department, University of Malaga, Malaga, Spain
    BMC Bioinformatics 10:16. 2009
  8. doi Evidence for an operative glutamine translocator in chloroplasts from maritime pine (Pinus pinaster Ait.) cotyledons
    M G Claros
    Departamento de Biologia Molecular y Bioquimica, Facultad de Ciencias, Universidad de Malaga, Malaga, Spain
    Plant Biol (Stuttg) 12:717-23. 2010
  9. pmc AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences
    Darío Guerrero
    Plataforma Andaluza de Bioinformática Universidad de Málaga, Severo Ochoa, 34, 29590 Malaga, Spain
    Algorithms Mol Biol 5:24. 2010
  10. ncbi Computational method to predict mitochondrially imported proteins and their targeting sequences
    M G Claros
    Laboratoire de Genetique Moleculaire, CNRS URA 1302, Ecole Normale Superieure, Paris, France or
    Eur J Biochem 241:779-86. 1996

Collaborators

  • David P Villalobos
  • Rocio Bautista
  • Noé Fernández-Pozo
  • Francisco R Cantón
  • Hicham Benzekri
  • Rodrigo Prado Martins
  • Darío Guerrero-Fernández
  • Darío Guerrero
  • Juan Falgueras
  • Victoria Martin-Requena
  • Xavier Cousin
  • Sabine Nidelet
  • Manuel Alejandro Merlo
  • Mireia Rovira
  • Laureana Rebordinos
  • Marian Ponce
  • Josep V Planas
  • David Mazurais
  • Diego Crespo
  • Manuel Manchado
  • Paula Armesto
  • Jose Luis Zambonino
  • Marta Gut
  • Carlos Infante
  • Marie Laure Bégout
  • Carmen Aguilar
  • Ana Carvajal
  • James E Graham
  • Juan J Garrido
  • Javier Canales
  • Francisco M Canovas
  • Concepción Avila
  • Ricardo Ordás
  • Pedro Perdiguero
  • Sara M Díaz-Moreno
  • M Angeles Guevara
  • M Teresa Cervera
  • Carmen Collada
  • Alvaro Soto
  • Arantxa Flores-Monterroso
  • Guillermo Pérez-Trabado
  • Antonio J Lara
  • Oswaldo Trelles
  • Antonio Muñoz-Mérida

Detail Information

Publications10

  1. pmc Why assembling plant genome sequences is so challenging
    Manuel Gonzalo Claros
    Department of Molecular Biology and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain
    Biology (Basel) 1:439-59. 2012
    ..As a result of these challenges and confounding factors, the correct assembly and annotation of plant genomes is hindered, genome drafts are produced, and advances in plant genomics are delayed. ..
  2. pmc Pyroptosis and adaptive immunity mechanisms are promptly engendered in mesenteric lymph-nodes during pig infections with Salmonella enterica serovar Typhimurium
    Rodrigo Prado Martins
    Grupo de Genómica y Mejora Animal, Departamento de Genetica, Facultad de Veterinaria, Universidad de Cordoba, Campus de Rabanales, Edificio Gregor Mendel C5, 14071, Cordoba, Spain
    Vet Res 44:120. 2013
    ..Taken together, our results are useful for a better understanding of the critical protective mechanisms against Salmonella that occur in porcine MLN to prevent the spread of infection beyond the intestine...
  3. pmc De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray
    Hicham Benzekri
    IFAPA Centro El Toruño, IFAPA, Consejería de Agricultura y Pesca, 11500 El Puerto de Santa Maria, Cadiz, Spain
    BMC Genomics 15:952. 2014
    ..Moreover, the comparative analysis of transcriptomes will be useful to understand flatfish evolution...
  4. pmc Reprogramming of gene expression during compression wood formation in pine: coordinated modulation of S-adenosylmethionine, lignin and lignan related genes
    David P Villalobos
    Departamento de Biologia Molecular y Bioquimica, Facultad de Ciencias, Universidad de Malaga, Campus Universitario de Teatinos, 29071, Malaga, Spain
    BMC Plant Biol 12:100. 2012
    ....
  5. pmc EuroPineDB: a high-coverage web database for maritime pine transcriptome
    Noé Fernández-Pozo
    Departamento de Biologia Molecular y Bioquimica, Facultad de Ciencias, Campus de Teatinos s n, Universidad de Malaga, 29071 Malaga, Spain
    BMC Genomics 12:366. 2011
    ..Its enormous genome size makes whole-genome sequencing approaches are hard to apply. Therefore, the expressed portion of the genome has to be characterised and the results and annotations have to be stored in dedicated databases...
  6. pmc SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
    Juan Falgueras
    Departamento de Lenguajes y Ciencias de la Computación, Universidad de Malaga, Malaga, Spain
    BMC Bioinformatics 11:38. 2010
    ..This requires increasing sequence quality and reliability in order to avoid database contamination with artefactual sequences. The arrival of pyrosequencing enhances this problem and necessitates customisable pre-processing algorithms...
  7. pmc PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data
    Victoria Martin-Requena
    Computer Architecture Department, University of Malaga, Malaga, Spain
    BMC Bioinformatics 10:16. 2009
    ..An interactive, easy to use application seems therefore necessary to help researchers to extract full information from data and analyse them in a simple, powerful and confident way...
  8. doi Evidence for an operative glutamine translocator in chloroplasts from maritime pine (Pinus pinaster Ait.) cotyledons
    M G Claros
    Departamento de Biologia Molecular y Bioquimica, Facultad de Ciencias, Universidad de Malaga, Malaga, Spain
    Plant Biol (Stuttg) 12:717-23. 2010
    ..As a result, the efficient assimilation of free ammonia produced by photorespiration, nitrate reduction, storage protein mobilisation, phenylpropanoid pathway or S-adenosylmethionine synthesis is guaranteed...
  9. pmc AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences
    Darío Guerrero
    Plataforma Andaluza de Bioinformática Universidad de Málaga, Severo Ochoa, 34, 29590 Malaga, Spain
    Algorithms Mol Biol 5:24. 2010
    ..As a consequence, they must be selected empirically by the researcher. AlignMiner has been developed to fill this gap in bioinformatic analyses...
  10. ncbi Computational method to predict mitochondrially imported proteins and their targeting sequences
    M G Claros
    Laboratoire de Genetique Moleculaire, CNRS URA 1302, Ecole Normale Superieure, Paris, France or
    Eur J Biochem 241:779-86. 1996
    ..As a practical application, the number of unknown yeast open reading frames that might be mitochondrial proteins has been predicted, which revealed that many of them are clustered...