Taewoo Ryu

Summary

Publications

  1. pmc The evolution of ultraconserved elements with different phylogenetic origins
    Taewoo Ryu
    Integrative Systems Biology Lab, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955 6900, Kingdom of Saudi Arabia
    BMC Evol Biol 12:236. 2012
  2. pmc Unexpected complexity of the reef-building coral Acropora millepora transcription factor network
    Taewoo Ryu
    Division of Chemical and Life Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
    BMC Syst Biol 5:58. 2011
  3. pmc Hologenome analysis of two marine sponges with different microbiomes
    Taewoo Ryu
    KAUST Environmental Epigenetic Program KEEP, King Abdullah University of Science and Technology, Thuwal, 23955 6900, Kingdom of Saudi Arabia
    BMC Genomics 17:158. 2016
  4. pmc Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
    Kondethimmanahalli H Chandramouli
    KAUST Environmental Epigenetic Program KEEP, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
    BMC Genomics 16:1063. 2015
  5. pmc SECOM: a novel hash seed and community detection based-approach for genome-scale protein domain identification
    Ming Fan
    Mathematical and Computer Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
    PLoS ONE 7:e39475. 2012
  6. pmc Dynamic epigenetic control of highly conserved noncoding elements
    Loqmane Seridi
    Division of Biological and Environmental Sciences and Engineering, Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
    PLoS ONE 9:e109326. 2014
  7. pmc miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria
    Yi Jin Liew
    Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955 6900, Kingdom of Saudi Arabia
    PLoS ONE 11:e0149080. 2016
  8. pmc The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions
    Charalampos Harris Mavromatis
    Division of Biological and Environmental Sciences and Engineering, Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia Division of Medical Genetics, Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA
    Cell Microbiol 17:730-46. 2015

Collaborators

Detail Information

Publications8

  1. pmc The evolution of ultraconserved elements with different phylogenetic origins
    Taewoo Ryu
    Integrative Systems Biology Lab, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955 6900, Kingdom of Saudi Arabia
    BMC Evol Biol 12:236. 2012
    ..The evolutionary origins and functional roles of these elements in cellular systems, however, have not yet been determined...
  2. pmc Unexpected complexity of the reef-building coral Acropora millepora transcription factor network
    Taewoo Ryu
    Division of Chemical and Life Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
    BMC Syst Biol 5:58. 2011
    ..Like in any other organism, the response of corals to stress is tightly controlled by the coordinated interplay of many transcription factors...
  3. pmc Hologenome analysis of two marine sponges with different microbiomes
    Taewoo Ryu
    KAUST Environmental Epigenetic Program KEEP, King Abdullah University of Science and Technology, Thuwal, 23955 6900, Kingdom of Saudi Arabia
    BMC Genomics 17:158. 2016
    ..Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content...
  4. pmc Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
    Kondethimmanahalli H Chandramouli
    KAUST Environmental Epigenetic Program KEEP, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
    BMC Genomics 16:1063. 2015
    ..We also investigated iTRAQ-based protein expression patterns to reveal the molecular basis of nauplii development, and to gain information on larval survival strategies in the Red Sea marine environment...
  5. pmc SECOM: a novel hash seed and community detection based-approach for genome-scale protein domain identification
    Ming Fan
    Mathematical and Computer Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
    PLoS ONE 7:e39475. 2012
    ..Furthermore, SECOM discovered two novel domains, likely of bacterial origin, that are taxonomically restricted to sea anemone and hydra. SECOM is an open-source program and available at http://sfb.kaust.edu.sa/Pages/Software.aspx...
  6. pmc Dynamic epigenetic control of highly conserved noncoding elements
    Loqmane Seridi
    Division of Biological and Environmental Sciences and Engineering, Division of Applied Mathematics and Computer Sciences, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia
    PLoS ONE 9:e109326. 2014
    ..The molecular functions of these elements have been partially elucidated, but the fundamental reason for their extreme conservation is still unknown...
  7. pmc miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria
    Yi Jin Liew
    Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, 23955 6900, Kingdom of Saudi Arabia
    PLoS ONE 11:e0149080. 2016
    ..Our analysis identified several miRNAs that are conserved amongst demosponges, and revealed that all of the novel miRNAs identified in these two species are specific to the class Demospongiae. ..
  8. pmc The co-transcriptome of uropathogenic Escherichia coli-infected mouse macrophages reveals new insights into host-pathogen interactions
    Charalampos Harris Mavromatis
    Division of Biological and Environmental Sciences and Engineering, Division of Computer, Electrical and Mathematical Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia Division of Medical Genetics, Department of Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA
    Cell Microbiol 17:730-46. 2015
    ....