Yuri B Lebedev

Summary

Country: Russia

Publications

  1. ncbi request reprint Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner
    Yuri B Lebedev
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
    Gene 390:122-9. 2007
  2. ncbi request reprint Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts
    Svetlana V Ustyugova
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16 10 Miklukho Maklaya, 117997, Moscow, Russia
    Genetica 128:261-72. 2006
  3. ncbi request reprint Cell line fingerprinting using retroelement insertion polymorphism
    Svetlana V Ustyugova
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
    Biotechniques 38:561-5. 2005
  4. pmc Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach
    Ilgar Z Mamedov
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences 16 10 Miklukho Maklaya Street, 117997 Moscow, Russia
    Nucleic Acids Res 33:e16. 2005
  5. pmc The evidence for increased L1 activity in the site of human adult brain neurogenesis
    Alexey A Kurnosov
    Laboratory of Comparative and Functional Genomics, Shemyakin Ovchinnikov Institute of Bioorganic Chemistry Russ Acad of Sci, Moscow, Russia
    PLoS ONE 10:e0117854. 2015
  6. pmc Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing
    Ivan V Zvyagin
    Department of Genomics and Postgenomic Technologies, Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow 117997, Russia
    Proc Natl Acad Sci U S A 111:5980-5. 2014
  7. pmc Mother and child T cell receptor repertoires: deep profiling study
    Ekaterina V Putintseva
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, Moscow, Russia
    Front Immunol 4:463. 2013
  8. pmc Quantitative tracking of T cell clones after haematopoietic stem cell transplantation
    Ilgar Z Mamedov
    Shemiakin Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia
    EMBO Mol Med 3:201-7. 2011
  9. pmc Contribution of functional KIR3DL1 to ankylosing spondylitis
    Ivan V Zvyagin
    Shemiakin Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia
    Cell Mol Immunol 7:471-6. 2010
  10. ncbi request reprint Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome
    Ilgar Z Mamedov
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, 16 10 Miklukho Maklaya Street, 117997 Moscow, Russia
    J Gen Virol 85:1485-8. 2004

Collaborators

  • Ilgar Z Mamedov
  • Dmitriy M Chudakov
  • Alexander Y Panchin
  • Yuri V Panchin
  • Ivan V Zvyagin
  • Svetlana V Ustyugova
  • Alexey A Kurnosov
  • Mikhail V Pogorelyy
  • Mikhail Shugay
  • Dmitriy B Staroverov
  • Ekaterina V Putintseva
  • Olga V Britanova
  • Eugene D Sverdlov
  • Konstantin V Khodosevich
  • Anastasia A Minervina
  • Alexander Yu Komkov
  • Vadim I Nazarov
  • Andrey A Shelenkov
  • Ekaterina A Komech
  • Marina E Ivanova
  • Dmitry A Bolotin
  • Ekaterina M Merzlyak
  • Mikhail Maschan
  • Dmitriy A Bolotin
  • Vlasta Bobrynina
  • Maria A Turchaninova
  • Alexei A Kotlobay
  • Anna V Chkalina
  • Evgeni L Nasonov
  • Dmitriy O Korostin
  • Sergey Lukyanov
  • Anna G Bochkova
  • Denis V Rebrikov
  • Anna L Amosova

Detail Information

Publications11

  1. ncbi request reprint Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner
    Yuri B Lebedev
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
    Gene 390:122-9. 2007
    ..We demonstrated that some AluY insertions correlated with decreased content of the corresponding hnRNAs. The effect observed does not depend on sequences of Alu elements and their orientation but is likely to be cell type specific...
  2. ncbi request reprint Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts
    Svetlana V Ustyugova
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16 10 Miklukho Maklaya, 117997, Moscow, Russia
    Genetica 128:261-72. 2006
    ..We demonstrated that some Ta-L1 insertions correlated with decreased content of the corresponding hnRNAs. This effect was characteristic of only nearly full-sized L1s and seemed to be tissue specific...
  3. ncbi request reprint Cell line fingerprinting using retroelement insertion polymorphism
    Svetlana V Ustyugova
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
    Biotechniques 38:561-5. 2005
    ..An estimated probability that two different cell lines possess the same marker genotype is about 10-18. Therefore, the proposed set of markers provides a reliable tool for cell line identification...
  4. pmc Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach
    Ilgar Z Mamedov
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences 16 10 Miklukho Maklaya Street, 117997 Moscow, Russia
    Nucleic Acids Res 33:e16. 2005
    ..The proposed method does not depend on preliminary knowledge of evolutionary history of retroelements and can be applied for identification of insertion/deletion polymorphic markers in genomes of different species...
  5. pmc The evidence for increased L1 activity in the site of human adult brain neurogenesis
    Alexey A Kurnosov
    Laboratory of Comparative and Functional Genomics, Shemyakin Ovchinnikov Institute of Bioorganic Chemistry Russ Acad of Sci, Moscow, Russia
    PLoS ONE 10:e0117854. 2015
    ..Insertions of retroelements and their activity could produce genetically diverse neuronal subsets, which can be involved in hippocampal-dependent learning and memory. ..
  6. pmc Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing
    Ivan V Zvyagin
    Department of Genomics and Postgenomic Technologies, Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow 117997, Russia
    Proc Natl Acad Sci U S A 111:5980-5. 2014
    ..These findings provide a deeper insight into the mechanism of TCR repertoire generation. ..
  7. pmc Mother and child T cell receptor repertoires: deep profiling study
    Ekaterina V Putintseva
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, Moscow, Russia
    Front Immunol 4:463. 2013
    ....
  8. pmc Quantitative tracking of T cell clones after haematopoietic stem cell transplantation
    Ilgar Z Mamedov
    Shemiakin Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia
    EMBO Mol Med 3:201-7. 2011
    ..We show that multiple clones survive the procedure, contribute to the immune response to activated infections, and form a new skewed and stable T cell receptor repertoire...
  9. pmc Contribution of functional KIR3DL1 to ankylosing spondylitis
    Ivan V Zvyagin
    Shemiakin Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia
    Cell Mol Immunol 7:471-6. 2010
    ..Nevertheless, even individuals with a genotype that carried two inhibitory KIR3DL1 alleles expressed at high levels could develop AS...
  10. ncbi request reprint Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome
    Ilgar Z Mamedov
    Shemyakin Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, 16 10 Miklukho Maklaya Street, 117997 Moscow, Russia
    J Gen Virol 85:1485-8. 2004
    ..A number of solo LTRs flanked by unusually long direct repeats were detected in the human genome. These unusual structures might be a product of an alternative virus insertion mechanism...
  11. ncbi request reprint Human trash ESTs--sequences from cDNA collection that are not aligned to genome assembly
    Alexander Y Panchin
    Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia
    J Bioinform Comput Biol 6:759-73. 2008
    ..Here, we attempt to identify the sources of human EST database contaminations. In particular, we discuss systematic contamination of the mammalian EST databases with sequences of plants...