Torsten Rohlfing

Summary

Publications

  1. pmc The INIA19 Template and NeuroMaps Atlas for Primate Brain Image Parcellation and Spatial Normalization
    Torsten Rohlfing
    Neuroscience Program, SRI International Menlo Park, CA, USA
    Front Neuroinform 6:27. 2012
  2. pmc "Nonparametric Local Smoothing" is not image registration
    Torsten Rohlfing
    Neuroscience Program, SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025, USA
    BMC Res Notes 5:610. 2012
  3. doi request reprint Why shared data should not be acknowledged on the author byline
    T Rohlfing
    SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    Neuroimage 59:4189-95. 2012
  4. pmc Image similarity and tissue overlaps as surrogates for image registration accuracy: widely used but unreliable
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA 94025 USA
    IEEE Trans Med Imaging 31:153-63. 2012
  5. pmc Regional brain structural dysmorphology in human immunodeficiency virus infection: effects of acquired immune deficiency syndrome, alcoholism, and age
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, California, USA
    Biol Psychiatry 72:361-70. 2012
  6. pmc Frontostriatal fiber bundle compromise in HIV infection without dementia
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, San Jose, California, USA
    AIDS 23:1977-85. 2009
  7. pmc Subject-matched templates for spatial normalization
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Med Image Comput Comput Assist Interv 12:224-31. 2009
  8. ncbi request reprint Transformation model and constraints cause bias in statistics on deformation fields
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Med Image Comput Comput Assist Interv 9:207-14. 2006
  9. pmc Volumetric cerebral perfusion imaging in healthy adults: regional distribution, laterality, and repeatability of pulsed continuous arterial spin labeling (PCASL)
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Psychiatry Res 182:266-73. 2010
  10. pmc White matter fiber degradation attenuates hemispheric asymmetry when integrating visuomotor information
    Tilman Schulte
    Neuroscience Program, SRI International, Menlo Park, California 94025 3493, USA
    J Neurosci 30:12168-78. 2010

Detail Information

Publications45

  1. pmc The INIA19 Template and NeuroMaps Atlas for Primate Brain Image Parcellation and Spatial Normalization
    Torsten Rohlfing
    Neuroscience Program, SRI International Menlo Park, CA, USA
    Front Neuroinform 6:27. 2012
    ..This article describes the construction of the template using freely available software tools, as well as the template itself, which is being made available to the scientific community (http://nitrc.org/projects/inia19/)...
  2. pmc "Nonparametric Local Smoothing" is not image registration
    Torsten Rohlfing
    Neuroscience Program, SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025, USA
    BMC Res Notes 5:610. 2012
    ....
  3. doi request reprint Why shared data should not be acknowledged on the author byline
    T Rohlfing
    SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    Neuroimage 59:4189-95. 2012
    ....
  4. pmc Image similarity and tissue overlaps as surrogates for image registration accuracy: widely used but unreliable
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA 94025 USA
    IEEE Trans Med Imaging 31:153-63. 2012
    ..We conclude that tissue overlap and image similarity, whether used alone or together, do not provide valid evidence for accurate registrations and should thus not be reported or accepted as such...
  5. pmc Regional brain structural dysmorphology in human immunodeficiency virus infection: effects of acquired immune deficiency syndrome, alcoholism, and age
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, California, USA
    Biol Psychiatry 72:361-70. 2012
    ..Despite considerable prevalence of HIV-alcoholism comorbidity, few studies examined the potentially heightened burden of disease comorbidity...
  6. pmc Frontostriatal fiber bundle compromise in HIV infection without dementia
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, San Jose, California, USA
    AIDS 23:1977-85. 2009
    ....
  7. pmc Subject-matched templates for spatial normalization
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Med Image Comput Comput Assist Interv 12:224-31. 2009
    ..We demonstrate that such an approach is technically feasible and significantly improves spatial normalization accuracy over using a single template...
  8. ncbi request reprint Transformation model and constraints cause bias in statistics on deformation fields
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Med Image Comput Comput Assist Interv 9:207-14. 2006
    ..These findings are not limited to DBM, but also apply to voxel-based morphometry to the extent that it includes a Jacobian-based correction step ("modulation")...
  9. pmc Volumetric cerebral perfusion imaging in healthy adults: regional distribution, laterality, and repeatability of pulsed continuous arterial spin labeling (PCASL)
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Psychiatry Res 182:266-73. 2010
    ..High CBF in the posterior cingulate and posterior and central precuneus cortices in this task-free acquisition suggests high activity in these principal nodes of the "default mode network."..
  10. pmc White matter fiber degradation attenuates hemispheric asymmetry when integrating visuomotor information
    Tilman Schulte
    Neuroscience Program, SRI International, Menlo Park, California 94025 3493, USA
    J Neurosci 30:12168-78. 2010
    ....
  11. pmc The SRI24 multichannel atlas of normal adult human brain structure
    Torsten Rohlfing
    SRI International, Neuroscience Program, Menlo Park, California 94025 3493, USA
    Hum Brain Mapp 31:798-819. 2010
    ..5T data. Furthermore, the SRI24 atlas is as suitable for label propagation as the comparison atlases and detailed enough to allow delineation of anatomical structures for this purpose directly in the atlas...
  12. pmc Independent contributions of cortical gray matter, aging, sex and alcoholism to K-complex amplitude evoked during sleep
    Ian M Colrain
    Human Sleep Research Program, SRI International, Menlo Park, CA 94025, USA
    Sleep 34:787-95. 2011
    ..The study was designed to determine whether these declines are related to the extent of cortical or subcortical shrinkage...
  13. pmc A mechanism of rapidly reversible cerebral ventricular enlargement independent of tissue atrophy
    Natalie M Zahr
    Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, USA
    Neuropsychopharmacology 38:1121-9. 2013
    ..Together, these data support a model of fluid redistribution during acute EtOH intoxication and recovery to account for rapid ventricular volume changes...
  14. pmc Regression models of atlas appearance
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Inf Process Med Imaging 21:151-62. 2009
    ..We conclude that regression appearance models are a promising new technique for image analysis, with one potential application being the representation of a continuum of mutually consistent, age-specific atlases of the human brain...
  15. pmc Sheet-like white matter fiber tracts: representation, clustering, and quantitative analysis
    Mahnaz Maddah
    Neuroscience Program, SRI International, Menlo Park, CA 94025, USA
    Med Image Comput Comput Assist Interv 14:191-9. 2011
    ..Applying the new method to a population study of brain aging on 24 subjects demonstrates the capabilities and strengths of the algorithm in identifying and visualizing spatial patterns of group differences...
  16. pmc In vivo glutamate measured with magnetic resonance spectroscopy: behavioral correlates in aging
    Natalie M Zahr
    Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, USA
    Neurobiol Aging 34:1265-76. 2013
    ..These findings suggest that low brain glutamate levels are related to high blood pressure and that changes in brain glutamate levels might mediate the behavioral changes noted in normal aging...
  17. ncbi request reprint Markerless real-time 3-D target region tracking by motion backprojection from projection images
    Torsten Rohlfing
    Neuroscience Program at SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025 3493, USA
    IEEE Trans Med Imaging 24:1455-68. 2005
    ..We conclude that motion backprojection from 2-D motion tracking is an accurate and efficient method for tracking 3-D target motion, but tracking 2-D motion accurately and robustly remains a challenge...
  18. pmc Accelerated aging of selective brain structures in human immunodeficiency virus infection: a controlled, longitudinal magnetic resonance imaging study
    Adolf Pfefferbaum
    Biosciences Division, Neuroscience Program, SRI International, Menlo Park, CA, USA Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, USA
    Neurobiol Aging 35:1755-68. 2014
    ....
  19. pmc Fiber tract-driven topographical mapping (FTTM) reveals microstructural relevance for interhemispheric visuomotor function in the aging brain
    Tilman Schulte
    SRI International, Neuroscience Program, 333 Ravenswood Ave, Menlo Park, CA 94025, USA
    Neuroimage 77:195-206. 2013
    ..This shift from youthful associations may indicate recruitment of compensatory mechanisms involving medial corpus callosum fibers and subcortical pathways...
  20. pmc Visual search and the aging brain: discerning the effects of age-related brain volume shrinkage on alertness, feature binding, and attentional control
    Eva M Müller-Oehring
    Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, and Neuroscience Program, SRI International, Menlo Park, California 94305 5723, USA
    Neuropsychology 27:48-59. 2013
    ....
  21. pmc Volume reconstruction by inverse interpolation: application to interleaved MR motion correction
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Med Image Comput Comput Assist Interv 11:798-806. 2008
    ..We demonstrate the usefulness of our method by applying it to retrospective motion correction in interleaved MR images...
  22. pmc Rat strain differences in brain structure and neurochemistry in response to binge alcohol
    Natalie M Zahr
    Psychiatry and Behavioral Sciences, Stanford University School of Medicine, 401 Quarry Rd, Stanford, CA, 94305, USA
    Psychopharmacology (Berl) 231:429-45. 2014
    ..g., N-acetylaspartate (NAA) and choline-containing compounds (Cho))...
  23. ncbi request reprint Shape-based averaging
    Torsten Rohlfing
    SRI International, Menlo Park, CA 94025 3493, USA
    IEEE Trans Image Process 16:153-61. 2007
    ..SBA also was more robust for small numbers of atlases and for low atlas resolutions, in particular, when combined with shape-based interpolation. We conclude that SBA improves the contiguity and accuracy of averaged image segmentations...
  24. ncbi request reprint Divergence-based framework for diffusion tensor clustering, interpolation, and regularization
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Inf Process Med Imaging 20:507-18. 2007
    ..e., smooth) noisy tensor data. For boundary-preserving regularization, we also propose a non-linear two-stage smoothing algorithm that can be considered remotely similar to a median filter...
  25. ncbi request reprint Contribution of alcoholism to brain dysmorphology in HIV infection: effects on the ventricles and corpus callosum
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, CA 94025, USA
    Neuroimage 33:239-51. 2006
    ....
  26. pmc Diffusion tensor imaging of deep gray matter brain structures: effects of age and iron concentration
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, United States
    Neurobiol Aging 31:482-93. 2010
    ....
  27. pmc Harmonizing DTI measurements across scanners to examine the development of white matter microstructure in 803 adolescents of the NCANDA study
    Kilian M Pohl
    Center for Health Sciences, SRI International, Menlo Park, CA, United States Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, United States
    Neuroimage 130:194-213. 2016
    ....
  28. pmc Associations between in vivo neuroimaging and postmortem brain cytokine markers in a rodent model of Wernicke's encephalopathy
    Natalie M Zahr
    Psychiatry and Behavioral Sciences, Stanford University School of Medicine, 401 Quarry Rd, Stanford, CA 94305, USA Neuroscience Program, SRI International, Menlo Park, CA 94025, USA Electronic address
    Exp Neurol 261:109-19. 2014
    ....
  29. pmc N-CANDA data integration: anatomy of an asynchronous infrastructure for multi-site, multi-instrument longitudinal data capture
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, California, USA
    J Am Med Inform Assoc 21:758-62. 2014
    ..Thus, the concepts implemented in N-CANDA's data collection system helped reduce project start-up time by several months. ..
  30. pmc Ventricular expansion in wild-type Wistar rats after alcohol exposure by vapor chamber
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, California, USA
    Alcohol Clin Exp Res 32:1459-67. 2008
    ....
  31. pmc Variation in longitudinal trajectories of regional brain volumes of healthy men and women (ages 10 to 85 years) measured with atlas-based parcellation of MRI
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, CA, USA
    Neuroimage 65:176-93. 2013
    ....
  32. pmc Thalamic volume deficit contributes to procedural and explicit memory impairment in HIV infection with primary alcoholism comorbidity
    Rosemary Fama
    Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine MC5723, 401 Quarry Road, Stanford, CA, 94305 5723, USA
    Brain Imaging Behav 8:611-20. 2014
    ....
  33. pmc Imaging neuroinflammation? A perspective from MR spectroscopy
    Natalie M Zahr
    Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine MC5723, Stanford, CA Neuroscience Program, SRI International, Menlo Park, CA
    Brain Pathol 24:654-64. 2014
    ....
  34. pmc Dynamic responses of selective brain white matter fiber tracts to binge alcohol and recovery in the rat
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, CA, United States of America Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, United States of America
    PLoS ONE 10:e0124885. 2015
    ..That a single exposure to binge alcohol can cause substantial transient changes detectable in DTI metrics demonstrates the potential for rapid neuroplasticity...
  35. pmc Developmental change in regional brain structure over 7 months in early adolescence: comparison of approaches for longitudinal atlas-based parcellation
    Edith V Sullivan
    Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA, USA
    Neuroimage 57:214-24. 2011
    ....
  36. ncbi request reprint Progressive attenuation fields: fast 2D-3D image registration without precomputation
    Torsten Rohlfing
    Neuroscience Program, SRI International, Menlo Park, California 94025 3493, USA
    Med Phys 32:2870-80. 2005
    ....
  37. pmc Combining atlas-based parcellation of regional brain data acquired across scanners at 1.5 T and 3.0 T field strengths
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, CA 94025, USA
    Neuroimage 60:940-51. 2012
    ..5 T and 3.0 T field strengths with the application of an appropriate correction procedure...
  38. pmc Degradation of association and projection white matter systems in alcoholism detected with quantitative fiber tracking
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, California, USA
    Biol Psychiatry 65:680-90. 2009
    ..Excessive alcohol use can cause macrostructural tissue shrinkage with regional preference for frontal systems. The extent and locus of alcoholism's effect on white matter microstructure is less known...
  39. pmc MRI estimates of brain iron concentration in normal aging: comparison of field-dependent (FDRI) and phase (SWI) methods
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, USA
    Neuroimage 47:493-500. 2009
    ....
  40. pmc Cerebral blood flow in posterior cortical nodes of the default mode network decreases with task engagement but remains higher than in most brain regions
    Adolf Pfefferbaum
    Neuroscience Program, SRI International, Menlo Park, CA 94025, USA
    Cereb Cortex 21:233-44. 2011
    ..The difference in regional CBF between intrinsic (resting) and evoked (task) activity levels may represent functional readiness or reserve vulnerable to diminution by conditions affecting perfusion...
  41. pmc Brain development in heavy-drinking adolescents
    Lindsay M Squeglia
    From the VA San Diego Healthcare System, La Jolla, Calif the Department of Psychiatry, University of California San Diego, La Jolla the Department of Psychiatry and Behavioral Sciences, Medical University of South Carolina, Charleston the Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford and the Neuroscience Program, SRI International, Menlo Park, Calif
    Am J Psychiatry 172:531-42. 2015
    ....
  42. ncbi request reprint Expectation maximization strategies for multi-atlas multi-label segmentation
    Torsten Rohlfing
    Image Guidance Laboratories, Department of Neurosurgery, Stanford University, Stanford, CA, USA
    Inf Process Med Imaging 18:210-21. 2003
    ..We demonstrate that a segmentation produced by combining multiple individual registration-based segmentations is more accurate for the two EM methods we propose than for simple label averaging...
  43. ncbi request reprint Deformation-based brain morphometry to track the course of alcoholism: differences between intra-subject and inter-subject analysis
    Torsten Rohlfing
    Neuroscience Program, SRI International, 333 Ravenswood Avenue, Menlo Park, CA 94025 3943, USA
    Psychiatry Res 146:157-70. 2006
    ..This discrepancy in results underscores the importance of distinguishing between volume differences and volume changes in morphometric analyses...
  44. ncbi request reprint Unwarping confocal microscopy images of bee brains by nonrigid registration to a magnetic resonance microscopy image
    Torsten Rohlfing
    SRI International, Neuroscience Program, 333 Ravenswood Avenue, Menlo Park, California 94025, USA
    J Biomed Opt 10:024018. 2005
    ..We present results obtained using CM images from the brains of 20 honey bees and a MRM image of an in situ bee brain...