Mario Tyago Murakami

Summary

Publications

  1. pmc Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases
    Priscila O de Giuseppe
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, Sao Paulo, Brazil
    PLoS ONE 7:e44282. 2012
  2. pmc Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber
    Fernando Segato
    Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA
    Biotechnol Biofuels 5:21. 2012
  3. pmc The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis, and structural modeling
    Daniela A Ribeiro
    Center for Molecular Biology and Genetic Engineering CBMEG, State University of Campinas UNICAMP, Candido Rondon Avenue 400, 13083 875 Campinas, SP, Brazil
    BMC Microbiol 11:259. 2011
  4. doi request reprint The repeat domain of the type III effector protein PthA shows a TPR-like structure and undergoes conformational changes upon DNA interaction
    Mario Tyago Murakami
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, 13083 970, Campinas, SP, Brazil
    Proteins 78:3386-95. 2010
  5. doi request reprint Structure and Mechanism of Dimer-Monomer Transition of a Plant Poly(A)-Binding Protein upon RNA Interaction: Insights into Its Poly(A) Tail Assembly
    Mariane Noronha Domingues
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil
    J Mol Biol 427:2491-506. 2015
  6. pmc A redox 2-Cys mechanism regulates the catalytic activity of divergent cyclophilins
    Bruna Medéia Campos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil
    Plant Physiol 162:1311-23. 2013
  7. ncbi request reprint The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 β-xylosidases
    Camila Ramos Santos
    Laboratório Nacional de Biociências LNBio, Centro Nacional de Pesquisa em Energia e Materiais, Rua giuseppe maximo scolfaro, 10000, Campinas SP 13083 970, Brazil
    Acta Crystallogr D Biol Crystallogr 68:1339-45. 2012
  8. doi request reprint Molecular insights into substrate specificity and thermal stability of a bacterial GH5-CBM27 endo-1,4-β-D-mannanase
    Camila Ramos dos Santos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP, Brazil
    J Struct Biol 177:469-76. 2012
  9. pmc Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7
    Letícia Maria Zanphorlin
    Brazilian Bioethanol Science and Technology Laboratory, Campinas, Sao Paulo, Brazil
    Sci Rep 6:23776. 2016
  10. doi request reprint Structural basis for xyloglucan specificity and α-d-Xylp(1 → 6)-D-Glcp recognition at the -1 subsite within the GH5 family
    Camila Ramos dos Santos
    Brazilian Biosciences National Laboratory, National Center of Research in Energy and Materials, Campinas, Sao Paulo 13083 970, Brazil
    Biochemistry 54:1930-42. 2015

Collaborators

  • Dominic W S Wong
  • Igor Polikarpov
  • Camila Ramos dos Santos
  • Mariane Noronha Domingues
  • Letícia Maria Zanphorlin
  • Paulo Sergio Lopes de Oliveira
  • Tatiana de Arruda Campos Brasil de Souza
  • Mauricio Luis Sforça
  • Roberto Ruller
  • Alline Artigiani Lima Tribst
  • Celso Eduardo Benedetti
  • Junio Cota
  • Bruna Medéia Campos
  • Evandro Ares de Araújo
  • Camila Ramos Santos
  • Fernando Segato
  • Priscila O de Giuseppe
  • Daniela A Ribeiro
  • Rodrigo Vargas Honorato
  • Juliana Fattori
  • Elaine Crespim
  • Priscila Oliveira de Giuseppe
  • Celisa Caldana Costa Tonoli
  • Alexandre Cassago
  • Ari Sadanandom
  • Rodrigo Villares Portugal
  • Jack Lee
  • Adriana Santos Soprano
  • Rosa Lorizolla Cordeiro
  • Ana Carolina de Mattos Zeri
  • Marcelo Cristianini
  • Adriana Franco Paes Leme
  • Atílio Tomazini
  • Sara Britt Marie Whittaker
  • Andre Luis Berteli Ambrosio
  • João Alexandre Ribeiro Gonçalvez Barbosa
  • Ana Carolina de Matos Zeri
  • Marco Antonio Seiki Kadowaki
  • Carlos Alberto Perez
  • Fabio M Squina
  • Mariadelourdestm Polizeli
  • Camila R Dos Santos
  • Thiago Augusto Gonçalves
  • Flavio Augusto Vicente Seixas
  • Joice Helena Paiva
  • Andreia Navarro Meza
  • Andreia N Meza
  • Rolf A Prade
  • Andrew J Mort
  • Fabio Marcio Squina
  • Rita de Cássia Garcia Simão
  • Juliana Moço Corrêa
  • Humberto D Muniz Pereira
  • Rolf Alexander Prade
  • Carla Cristina Polo
  • Nadia H Martins
  • Thabata Maria Alvarez
  • André R L Damásio
  • Lucio F C Ferraz
  • Laura M M Ottoboni
  • Luiz E V Del Bem
  • Renato Vicentini

Detail Information

Publications12

  1. pmc Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases
    Priscila O de Giuseppe
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, Sao Paulo, Brazil
    PLoS ONE 7:e44282. 2012
    ..cereus hexameric adenosine phosphorylase (Thr(91)) is responsible for the lack of negative cooperativity of phosphate binding in this enzyme...
  2. pmc Two structurally discrete GH7-cellobiohydrolases compete for the same cellulosic substrate fiber
    Fernando Segato
    Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA
    Biotechnol Biofuels 5:21. 2012
    ..abstract:..
  3. pmc The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis, and structural modeling
    Daniela A Ribeiro
    Center for Molecular Biology and Genetic Engineering CBMEG, State University of Campinas UNICAMP, Candido Rondon Avenue 400, 13083 875 Campinas, SP, Brazil
    BMC Microbiol 11:259. 2011
    ....
  4. doi request reprint The repeat domain of the type III effector protein PthA shows a TPR-like structure and undergoes conformational changes upon DNA interaction
    Mario Tyago Murakami
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, 13083 970, Campinas, SP, Brazil
    Proteins 78:3386-95. 2010
    ..The results point to a model in which the RD2 structure changes its compactness as it embraces the DNA with the polymorphic diresidues facing the interior of the superhelix oriented toward the nucleotide bases...
  5. doi request reprint Structure and Mechanism of Dimer-Monomer Transition of a Plant Poly(A)-Binding Protein upon RNA Interaction: Insights into Its Poly(A) Tail Assembly
    Mariane Noronha Domingues
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil
    J Mol Biol 427:2491-506. 2015
    ....
  6. pmc A redox 2-Cys mechanism regulates the catalytic activity of divergent cyclophilins
    Bruna Medéia Campos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP CP6192, Brazil
    Plant Physiol 162:1311-23. 2013
    ..This suggests a new type of allosteric regulation in divergent cyclophilins, involving disulfide bond formation and a loop-displacement mechanism. ..
  7. ncbi request reprint The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 β-xylosidases
    Camila Ramos Santos
    Laboratório Nacional de Biociências LNBio, Centro Nacional de Pesquisa em Energia e Materiais, Rua giuseppe maximo scolfaro, 10000, Campinas SP 13083 970, Brazil
    Acta Crystallogr D Biol Crystallogr 68:1339-45. 2012
    ..These interactions also maintain the accessory domain tightly linked to the catalytic core, which may be important for enzyme function and stability...
  8. doi request reprint Molecular insights into substrate specificity and thermal stability of a bacterial GH5-CBM27 endo-1,4-β-D-mannanase
    Camila Ramos dos Santos
    Laboratório Nacional de Biociências, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, SP, Brazil
    J Struct Biol 177:469-76. 2012
    ....
  9. pmc Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7
    Letícia Maria Zanphorlin
    Brazilian Bioethanol Science and Technology Laboratory, Campinas, Sao Paulo, Brazil
    Sci Rep 6:23776. 2016
    ..These findings reveal a novel strategy for enzyme cold adaptation and provide a framework for the semi-rational engineering of β-glucosidases aiming at cold industrial processes. ..
  10. doi request reprint Structural basis for xyloglucan specificity and α-d-Xylp(1 → 6)-D-Glcp recognition at the -1 subsite within the GH5 family
    Camila Ramos dos Santos
    Brazilian Biosciences National Laboratory, National Center of Research in Energy and Materials, Campinas, Sao Paulo 13083 970, Brazil
    Biochemistry 54:1930-42. 2015
    ..The stereochemical compatibility of the -1 subsite with a xylosyl moiety was also reported for other structurally nonrelated XEGs belonging to the GH74 family, indicating it to be an essential attribute for this mode of action. ..
  11. pmc Effects of high pressure homogenization on the activity, stability, kinetics and three-dimensional conformation of a glucose oxidase produced by Aspergillus niger
    Alline Artigiani Lima Tribst
    Department of Food Technology DTA, School of Food Engineering FEA, University of Campinas UNICAMP, Campinas, SP, Brazil
    PLoS ONE 9:e103410. 2014
    ..Both fluorescence and circular dichroism revealed conformational changes in the molecular structure of the enzyme that might be associated with the distinct functional and stability behavior of GO. ..
  12. pmc Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris
    Evandro Ares de Araújo
    Instituto de Fisica de Sao Carlos, Universidade de Sao Paulo, 400 Trabalhador Saocarlense, 13566 590 Sao Carlos, SP, Brazil
    Acta Crystallogr Sect F Struct Biol Cryst Commun 69:676-8. 2013
    ..0 and 2.1 Å, respectively. The data were indexed in a hexagonal crystal system with unit-cell parameters a = b = 153.4, c = 84.9 Å. As indicated by molecular-replacement solution, the crystals belonged to space group P6(1)...