Hiroshi Noguchi

Summary

Affiliation: University of Tokyo
Country: Japan

Publications

  1. ncbi request reprint Dynamic modes of microcapsules in steady shear flow: effects of bending and shear elasticities
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 81:056319. 2010
  2. ncbi request reprint Transport coefficients of off-lattice mesoscale-hydrodynamics simulation techniques
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, D 52425 Julich, Germany
    Phys Rev E Stat Nonlin Soft Matter Phys 78:016706. 2008
  3. pmc Construction of Nuclear Envelope Shape by a High-Genus Vesicle with Pore-Size Constraint
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba, Japan Electronic address
    Biophys J 111:824-31. 2016
  4. doi request reprint Morphological changes of amphiphilic molecular assemblies induced by chemical reactions
    Koh M Nakagawa
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Soft Matter 11:1403-11. 2015
  5. doi request reprint Shape transformations of toroidal vesicles
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Soft Matter 11:193-201. 2015
  6. doi request reprint Structure formation in binary mixtures of lipids and detergents: self-assembly and vesicle division
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    J Chem Phys 138:024907. 2013
  7. ncbi request reprint Dynamic modes of red blood cells in oscillatory shear flow
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 81:061920. 2010
  8. ncbi request reprint Anisotropic surface tension of buckled fluid membranes
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 83:061919. 2011
  9. ncbi request reprint Swinging and synchronized rotations of red blood cells in simple shear flow
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 80:021902. 2009
  10. doi request reprint Solvent-free coarse-grained lipid model for large-scale simulations
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    J Chem Phys 134:055101. 2011

Collaborators

Detail Information

Publications26

  1. ncbi request reprint Dynamic modes of microcapsules in steady shear flow: effects of bending and shear elasticities
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 81:056319. 2010
    ..This phase behavior agrees with recent simulation results of microcapsules with low bending elasticity...
  2. ncbi request reprint Transport coefficients of off-lattice mesoscale-hydrodynamics simulation techniques
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, D 52425 Julich, Germany
    Phys Rev E Stat Nonlin Soft Matter Phys 78:016706. 2008
    ..In particular, the viscosity is derived in a general form for all variants of the MPC method. In general, very good agreement between theory and simulations is obtained...
  3. pmc Construction of Nuclear Envelope Shape by a High-Genus Vesicle with Pore-Size Constraint
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba, Japan Electronic address
    Biophys J 111:824-31. 2016
    ..When area-difference elasticity is taken into account, the formation of cylindrical or budded tubules from the stomatocyte and discoidal stomatocyte is found. ..
  4. doi request reprint Morphological changes of amphiphilic molecular assemblies induced by chemical reactions
    Koh M Nakagawa
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Soft Matter 11:1403-11. 2015
    ..It is revealed that the enhancement of this transition is due to embedded hydrophobic particles that reduce the membrane bending rigidity. ..
  5. doi request reprint Shape transformations of toroidal vesicles
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Soft Matter 11:193-201. 2015
    ..Polygonal toroidal vesicles and subsequent budding transitions are also found. The entropy caused by shape fluctuations slightly modifies the stability of the vesicle shapes. ..
  6. doi request reprint Structure formation in binary mixtures of lipids and detergents: self-assembly and vesicle division
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    J Chem Phys 138:024907. 2013
    ..For large spontaneous curvature of the monolayers of the detergents, a pore is often opened, thereby leading to vesicle division or worm-like micelle formation...
  7. ncbi request reprint Dynamic modes of red blood cells in oscillatory shear flow
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 81:061920. 2010
    ..The measurement of these oscillatory modes is a promising tool for quantifying the viscoelasticity of RBCs, synthetic capsules, and lipid vesicles...
  8. ncbi request reprint Anisotropic surface tension of buckled fluid membranes
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 83:061919. 2011
    ..This anisotropic tension can be used to measure the membrane bending rigidity. It is also found that phase synchronization occurs between multilayered buckled membranes...
  9. ncbi request reprint Swinging and synchronized rotations of red blood cells in simple shear flow
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 80:021902. 2009
    ..These dynamics are robust to the modification of the potential of the RBC shape and membrane rotation. Our results agree well with recent experiments...
  10. doi request reprint Solvent-free coarse-grained lipid model for large-scale simulations
    Hiroshi Noguchi
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    J Chem Phys 134:055101. 2011
    ..The stability of the bilayer membrane is investigated via droplet-vesicle transition. The rupture of the bilayer and worm-like micelle formation can be induced by an increase in the spontaneous curvature of the monolayer membrane...
  11. ncbi request reprint Dynamics of fluid vesicles in shear flow: effect of membrane viscosity and thermal fluctuations
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, Germany
    Phys Rev E Stat Nonlin Soft Matter Phys 72:011901. 2005
    ..Thermal fluctuations induce intermittent tumbling and smooth out the transitions. This effect can be understood from a simplified stochastic model...
  12. ncbi request reprint Meshless membrane model based on the moving least-squares method
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    Phys Rev E Stat Nonlin Soft Matter Phys 73:021903. 2006
    ..The finite-size effects of nearly planar membranes are investigated. This model is well suited to study the membrane dynamics with topological changes...
  13. pmc Flow-induced clustering and alignment of vesicles and red blood cells in microcapillaries
    J Liam McWhirter
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    Proc Natl Acad Sci U S A 106:6039-43. 2009
    ..The deformation-mediated clustering and the arrangements of RBCs and microcapsules are relevant for many potential applications in physics, biology, and medicine, such as blood diagnosis and cell sorting in microfluidic devices...
  14. ncbi request reprint Swinging and tumbling of fluid vesicles in shear flow
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    Phys Rev Lett 98:128103. 2007
    ..We predict the dynamic phase diagram as a function of the shear rate, the viscosities of the membrane and the internal fluid, and the reduced vesicle volume. Our results agree well with recent experiments...
  15. ncbi request reprint Dynamics of vesicle self-assembly and dissolution
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    J Chem Phys 125:164908. 2006
    ..Hydrodynamic interactions are found to speed up the dynamics in both cases. Furthermore, hydrodynamics makes vesicle more spherical in the membrane-closure process...
  16. pmc Shape transitions of fluid vesicles and red blood cells in capillary flows
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    Proc Natl Acad Sci U S A 102:14159-64. 2005
    ..Slipper-like shapes of the RBC model are observed around the transition velocities. Our results are in good agreement with experiments on RBCs...
  17. ncbi request reprint Fluid vesicles with viscous membranes in shear flow
    Hiroshi Noguchi
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    Phys Rev Lett 93:258102. 2004
    ..Depending on the reduced volume and membrane viscosity, shear can induce both discocyte-to-prolate and prolate-to-discocyte transformations. This behavior can be understood from a simplified model...
  18. ncbi request reprint Dynamical regimes and hydrodynamic lift of viscous vesicles under shear
    Sebastian Messlinger
    Institut fur Festkorperforschung, Forschungszentrum Julich, D 52425 Julich, Germany
    Phys Rev E Stat Nonlin Soft Matter Phys 80:011901. 2009
    ..8Rp< approximately ycm< approximately 3Rp with vesicle radius Rp. The boundary-integral calculation indicates that the lift force decays asymptotically as 1/[ycm ln(ycm)] far from the wall...
  19. ncbi request reprint Morphological variation of a lipid vesicle confined in a spherical vesicle
    Ai Sakashita
    Department of Physics, Ochanomizu University, 2 1 1 Otsuka, Bunkyo, Tokyo 112 8610, Japan and Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E Stat Nonlin Soft Matter Phys 89:040701. 2014
    ..The simulations reproduced the experimental results very well and some of the shape transitions can be understood by a simple theoretical model for axisymmetric shapes. ..
  20. doi request reprint Quantum sieving effect of three-dimensional Cu-based organic framework for H2 and D2
    Daisuke Noguchi
    Department of Chemistry, Graduate School of Science, Chiba University, 1 33 Yayoi, Inage, Chiba, 263 8522, Japan
    J Am Chem Soc 130:6367-72. 2008
    ..6 to 5.8. The possibility of the quantum molecular sieving effect for H 2 and D 2 adsorption on [Cu 3(benzene-1,3,5-tricarboxylate) 2(H 2O) 3] n of three-dimensional pore networks was also shown at 77 K...
  21. doi request reprint Multiscale modeling of blood flow: from single cells to blood rheology
    Dmitry A Fedosov
    Theoretical Soft Matter and Biophysics, Institute of Complex Systems and Institute for Advanced Simulation, Forschungszentrum Julich, 52425, Julich, Germany
    Biomech Model Mechanobiol 13:239-58. 2014
    ..Comparisons of the simulation predictions with existing experimental results are made whenever possible, and generally very satisfactory agreement is obtained. ..
  22. doi request reprint Structure formation of surfactant membranes under shear flow
    Hayato Shiba
    Institute for Solid State Physics, University of Tokyo, Chiba 277 8581, Japan
    J Chem Phys 139:014702. 2013
    ..Structural evolution in time exhibits a moderate dependence on the initial condition. ..
  23. pmc A structure-based mechanism for benzalacetone synthase from Rheum palmatum
    Hiroyuki Morita
    Graduate School of Pharmaceutical Sciences, University of Tokyo, 7 3 1 Hongo, Bunkyo ku, Tokyo 113 0033, Japan
    Proc Natl Acad Sci U S A 107:669-73. 2010
    ..These findings provided a structural basis for the functional diversity of the type III PKS enzymes...
  24. doi request reprint Monte Carlo study of the frame, fluctuation and internal tensions of fluctuating membranes with fixed area
    Hayato Shiba
    Institute for Solid State Physics, University of Tokyo, Chiba 277 8581, Japan
    Soft Matter 12:2373-80. 2016
    ..Our results appear to be valid in the thermodynamic limit and are robust to changing the ensemble in which the membrane area is controlled. ..
  25. ncbi request reprint Relevance of angular momentum conservation in mesoscale hydrodynamics simulations
    Ingo O Götze
    Institut fur Festkorperforschung, Forschungszentrum Julich, 52425 Julich, Germany
    Phys Rev E Stat Nonlin Soft Matter Phys 76:046705. 2007
    ..These results quantitatively agree with the theoretical predictions based on the macroscopic stress tensor...
  26. ncbi request reprint Nonuniqueness of local stress of three-body potentials in molecular simulations
    Koh M Nakagawa
    Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277 8581, Japan
    Phys Rev E 94:053304. 2016
    ..We compare the force decompositions by stress-distribution magnitude and discuss their difference in the stress profile of a bilayer membrane by using coarse-grained and atomistic molecular dynamics simulations...