Kiyoko F Aoki-Kinoshita

Summary

Affiliation: Soka University
Country: Japan

Publications

  1. ncbi request reprint Bioinformatics approaches in glycomics and drug discovery
    Kiyoko F Aoki-Kinoshita
    Soka University, Faculty of Engineering, Department of Bioinformatics, 1 236 Tangi cho, Hachioji shi, Tokyo 192 8577, Japan
    Curr Opin Mol Ther 8:514-20. 2006
  2. pmc The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 1:8. 2010
  3. doi request reprint Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database
    Yukie Akune
    Department of Chemistry and Biomolecular Sciences, Faculty of Science and Engineering, Macquarie University, Balaclava Road, North Ryde, NSW, 2109, Australia Department of Bioinformatics, Graduate School of Engineering, Soka University, 1 236, Tangi, Hachioji, 192 8577, Tokyo, Japan
    Carbohydr Res 431:56-63. 2016
  4. doi request reprint Development and Application of an Algorithm to Compute Weighted Multiple Glycan Alignments
    Masae Hosoda
    Department of Bioinformatics, Graduate School of Engineering, Soka University, Tokyo, 192 8577, Japan
    Bioinformatics . 2017
  5. doi request reprint Glycomic analysis using KEGG GLYCAN
    Kiyoko F Aoki-Kinoshita
    Department of Bioinformatics, Faculty of Engineering, Soka University, 1 236 Tangi machi, Hachioji, Tokyo, 192 8577, Japan
    Methods Mol Biol 1273:97-107. 2015
  6. pmc GlycoRDF: an ontology to standardize glycomics data in RDF
    René Ranzinger
    Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, Faculty of Engineering, Soka University, Tokyo, Japan, Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, Institute of Veterinary Physiology and Biochemistry, Justus Liebig University Giessen, Giessen, Germany, Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, N D Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and Laboratory of Glyco organic Chemistry, The Noguchi Institute, Tokyo, Japan
    Bioinformatics 31:919-25. 2015
  7. pmc UniCarbKB: building a knowledge platform for glycoproteomics
    Matthew P Campbell
    Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Swiss Prot group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Department of Bioinformatics, Faculty of Engineering, Soka University, 1 236 Tangi machi, Hachioji, Tokyo, Japan and Section of Biology, Faculty of Sciences, University of Geneva, Switzerland
    Nucleic Acids Res 42:D215-21. 2014

Collaborators

  • Hisashi Narimatsu
  • Shujiro Okuda
  • Thomas Lütteke
  • Elisabeth Gasteiger
  • Frederique Lisacek
  • René Ranzinger
  • Yukie Akune
  • Matthew P Campbell
  • Masae Hosoda
  • Nicolle H Packer
  • Toshiaki Katayama
  • Jodie L Abrahams
  • Jingyu Zhang
  • Chi Hung Lin
  • Julien Mariethoz
  • Robyn Peterson
  • Edward A Kawas
  • Mitsuteru Nakao
  • Kazuharu Arakawa
  • Toshiyuki Tashiro
  • Arnaud Kerhornou
  • Eri Kibukawa
  • Akira R Kinjo
  • Alex Gutteridge
  • Shuichi Kawashima
  • Hong Woo Chun
  • Jan Aerts
  • Kiyoshi Asai
  • Yasunori Yamamoto
  • Oswaldo Trelles
  • Jose M Fernandez
  • Jan C Bryne
  • Yoshinobu Kano
  • Keiichiro Ono
  • Bruno Aranda
  • Evangelos Pafilis
  • Heikki Lehvaslaiho
  • Lord Hendrix Barboza
  • Shinobu Okamoto
  • Stuart Owen
  • Daron M Standley
  • Richard Holland
  • Raoul Jp Bonnal
  • Yasumasa Shigemoto
  • Hiroyuki Nakamura
  • Andreas Groscurth
  • Toshihisa Takagi
  • Atsuko Yamaguchi
  • Matthew Pocock
  • Thomas M Oinn
  • Mark Schreiber
  • Tatsuya Nishizawa
  • Yasukazu Nakamura
  • Florian Reisinger
  • Akira Funahashi
  • Mark D Wilkinson
  • Hilmar Lapp
  • Naohisa Goto
  • Chikashi Nobata
  • Paul Mk Gordon
  • Martin Senger
  • Michael Kuhn
  • Pjotr Prins
  • WILLIAM YORK
  • Richard Bruskiewich
  • Tamotsu Noguchi
  • Hideaki Sugawara
  • Lukasz Salwinski
  • Christian M Zmasek
  • Rutger A Vos

Detail Information

Publications7

  1. ncbi request reprint Bioinformatics approaches in glycomics and drug discovery
    Kiyoko F Aoki-Kinoshita
    Soka University, Faculty of Engineering, Department of Bioinformatics, 1 236 Tangi cho, Hachioji shi, Tokyo 192 8577, Japan
    Curr Opin Mol Ther 8:514-20. 2006
    ....
  2. pmc The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 1:8. 2010
    ....
  3. doi request reprint Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database
    Yukie Akune
    Department of Chemistry and Biomolecular Sciences, Faculty of Science and Engineering, Macquarie University, Balaclava Road, North Ryde, NSW, 2109, Australia Department of Bioinformatics, Graduate School of Engineering, Soka University, 1 236, Tangi, Hachioji, 192 8577, Tokyo, Japan
    Carbohydr Res 431:56-63. 2016
    ..org), a database which stores experimentally described glycan structures reported in the literature, and demonstrate that UniCorn can be used to aid in the assignment of ambiguous structures whilst also serving as a discovery database. ..
  4. doi request reprint Development and Application of an Algorithm to Compute Weighted Multiple Glycan Alignments
    Masae Hosoda
    Department of Bioinformatics, Graduate School of Engineering, Soka University, Tokyo, 192 8577, Japan
    Bioinformatics . 2017
    ..Thus, we have developed the MCAW (Multiple Carbohydrate Alignment with Weights) tool that can align multiple glycan structures, to aid in the understanding of their function as binding recognition molecules...
  5. doi request reprint Glycomic analysis using KEGG GLYCAN
    Kiyoko F Aoki-Kinoshita
    Department of Bioinformatics, Faculty of Engineering, Soka University, 1 236 Tangi machi, Hachioji, Tokyo, 192 8577, Japan
    Methods Mol Biol 1273:97-107. 2015
    ..A number of analytical tools are also available, including the composite structure map (CSM), KegDraw, KCam, and GECS. These databases and tools will be described along with simple examples of their usage. ..
  6. pmc GlycoRDF: an ontology to standardize glycomics data in RDF
    René Ranzinger
    Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, Faculty of Engineering, Soka University, Tokyo, Japan, Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, Institute of Veterinary Physiology and Biochemistry, Justus Liebig University Giessen, Giessen, Germany, Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, N D Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and Laboratory of Glyco organic Chemistry, The Noguchi Institute, Tokyo, Japan
    Bioinformatics 31:919-25. 2015
    ..Unfortunately, there is no common standard in the representation of the stored information or a common machine-readable interface allowing bioinformatics groups to easily extract and cross-reference the stored information...
  7. pmc UniCarbKB: building a knowledge platform for glycoproteomics
    Matthew P Campbell
    Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Swiss Prot group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Department of Bioinformatics, Faculty of Engineering, Soka University, 1 236 Tangi machi, Hachioji, Tokyo, Japan and Section of Biology, Faculty of Sciences, University of Geneva, Switzerland
    Nucleic Acids Res 42:D215-21. 2014
    ..Here, we introduce a refactored database, supported by substantial new curated data collections and intuitive user-interfaces that improve database searching. ..