Kiyoko F Aoki-Kinoshita
Affiliation: Soka University
- Bioinformatics approaches in glycomics and drug discoveryKiyoko F Aoki-Kinoshita
Soka University, Faculty of Engineering, Department of Bioinformatics, 1 236 Tangi cho, Hachioji shi, Tokyo 192 8577, Japan
Curr Opin Mol Ther 8:514-20. 2006....
- The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*Toshiaki Katayama
Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
J Biomed Semantics 1:8. 2010....
- Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure databaseYukie Akune
Department of Chemistry and Biomolecular Sciences, Faculty of Science and Engineering, Macquarie University, Balaclava Road, North Ryde, NSW, 2109, Australia Department of Bioinformatics, Graduate School of Engineering, Soka University, 1 236, Tangi, Hachioji, 192 8577, Tokyo, Japan
Carbohydr Res 431:56-63. 2016..org), a database which stores experimentally described glycan structures reported in the literature, and demonstrate that UniCorn can be used to aid in the assignment of ambiguous structures whilst also serving as a discovery database. ..
- Development and Application of an Algorithm to Compute Weighted Multiple Glycan AlignmentsMasae Hosoda
Department of Bioinformatics, Graduate School of Engineering, Soka University, Tokyo, 192 8577, Japan
Bioinformatics . 2017..Thus, we have developed the MCAW (Multiple Carbohydrate Alignment with Weights) tool that can align multiple glycan structures, to aid in the understanding of their function as binding recognition molecules...
- Glycomic analysis using KEGG GLYCANKiyoko F Aoki-Kinoshita
Department of Bioinformatics, Faculty of Engineering, Soka University, 1 236 Tangi machi, Hachioji, Tokyo, 192 8577, Japan
Methods Mol Biol 1273:97-107. 2015..A number of analytical tools are also available, including the composite structure map (CSM), KegDraw, KCam, and GECS. These databases and tools will be described along with simple examples of their usage. ..
- GlycoRDF: an ontology to standardize glycomics data in RDFRené Ranzinger
Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, Faculty of Engineering, Soka University, Tokyo, Japan, Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, Institute of Veterinary Physiology and Biochemistry, Justus Liebig University Giessen, Giessen, Germany, Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, N D Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and Laboratory of Glyco organic Chemistry, The Noguchi Institute, Tokyo, Japan
Bioinformatics 31:919-25. 2015..Unfortunately, there is no common standard in the representation of the stored information or a common machine-readable interface allowing bioinformatics groups to easily extract and cross-reference the stored information...
- UniCarbKB: building a knowledge platform for glycoproteomicsMatthew P Campbell
Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Swiss Prot group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Department of Bioinformatics, Faculty of Engineering, Soka University, 1 236 Tangi machi, Hachioji, Tokyo, Japan and Section of Biology, Faculty of Sciences, University of Geneva, Switzerland
Nucleic Acids Res 42:D215-21. 2014..Here, we introduce a refactored database, supported by substantial new curated data collections and intuitive user-interfaces that improve database searching. ..