Mukesh Bansal

Summary

Affiliation: Telethon Institute of Genetics and Medicine
Country: Italy

Publications

  1. ncbi request reprint Discovering drug mode of action using reverse-engineered gene networks
    Mukesh Bansal
    Mukesh Bansal is PhD Student at Telethon Institute of Genetics and Medicine TIGEM, Via P Castellino 111, Naples 80131, Italy
    Conf Proc IEEE Eng Med Biol Soc 5:4739-42. 2005
  2. ncbi request reprint Inference of gene networks from temporal gene expression profiles
    M Bansal
    Telethon Institute of Genetics and Medicine, Via P Castellino 111, Naples 80131, Italy
    IET Syst Biol 1:306-12. 2007
  3. pmc Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering
    Giusy Della Gatta
    Telethon Institute of Genetics and Medicine, 80131 Naples, Italy
    Genome Res 18:939-48. 2008
  4. pmc Computational framework for the prediction of transcription factor binding sites by multiple data integration
    Alberto Ambesi-Impiombato
    TIGEM, Telethon Institute of Genetics and Medicine, Naples, Italy
    BMC Neurosci 7:S8. 2006
  5. doi request reprint A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches
    Irene Cantone
    Telethon Institute of Genetics and Medicine, Naples 80131, Italy
    Cell 137:172-81. 2009
  6. ncbi request reprint Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
    Mukesh Bansal
    Telethon Institute of Genetics and Medicine, Via P Castellino 111, 80131 Naples, Italy
    Bioinformatics 22:815-22. 2006
  7. pmc How to infer gene networks from expression profiles
    Mukesh Bansal
    Telethon Institute of Genetics and Medicine, Via P Castellino, Naples, Italy
    Mol Syst Biol 3:78. 2007
  8. ncbi request reprint Linear matrix inequalities approach to reconstruction of biological networks
    C Cosentino
    School of Computer and Biomedical Engineering, Universià degli Studi Magna Grxcia di Catanzaro, Viale Europa, Campus di Germaneto, Catanzaro 88100, Italy
    IET Syst Biol 1:164-73. 2007

Collaborators

Detail Information

Publications8

  1. ncbi request reprint Discovering drug mode of action using reverse-engineered gene networks
    Mukesh Bansal
    Mukesh Bansal is PhD Student at Telethon Institute of Genetics and Medicine TIGEM, Via P Castellino 111, Naples 80131, Italy
    Conf Proc IEEE Eng Med Biol Soc 5:4739-42. 2005
    ..We show that the algorithm can correctly identify the known drug targets and associated pathways...
  2. ncbi request reprint Inference of gene networks from temporal gene expression profiles
    M Bansal
    Telethon Institute of Genetics and Medicine, Via P Castellino 111, Naples 80131, Italy
    IET Syst Biol 1:306-12. 2007
    ..This approach can infer regulatory interactions even when only a small number of measurements is available...
  3. pmc Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering
    Giusy Della Gatta
    Telethon Institute of Genetics and Medicine, 80131 Naples, Italy
    Genome Res 18:939-48. 2008
    ..The integrated experimental and computational approach described here is readily applicable to other transcription factors in mammalian systems and is complementary to genome-wide identification of transcription-factor binding sites...
  4. pmc Computational framework for the prediction of transcription factor binding sites by multiple data integration
    Alberto Ambesi-Impiombato
    TIGEM, Telethon Institute of Genetics and Medicine, Naples, Italy
    BMC Neurosci 7:S8. 2006
    ....
  5. doi request reprint A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches
    Irene Cantone
    Telethon Institute of Genetics and Medicine, Naples 80131, Italy
    Cell 137:172-81. 2009
    ..A semiquantitative model was able to capture and predict the behavior of the network. Reverse engineering based on differential equations and Bayesian networks correctly inferred regulatory interactions from the experimental data...
  6. ncbi request reprint Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
    Mukesh Bansal
    Telethon Institute of Genetics and Medicine, Via P Castellino 111, 80131 Naples, Italy
    Bioinformatics 22:815-22. 2006
    ..We applied this algorithm to computer simulated data and to experimental data on a nine gene network in Escherichia coli...
  7. pmc How to infer gene networks from expression profiles
    Mukesh Bansal
    Telethon Institute of Genetics and Medicine, Via P Castellino, Naples, Italy
    Mol Syst Biol 3:78. 2007
    ....
  8. ncbi request reprint Linear matrix inequalities approach to reconstruction of biological networks
    C Cosentino
    School of Computer and Biomedical Engineering, Universià degli Studi Magna Grxcia di Catanzaro, Viale Europa, Campus di Germaneto, Catanzaro 88100, Italy
    IET Syst Biol 1:164-73. 2007
    ..A further validation is performed through an in silico biological experiment, exploiting the well-assessed cell-cycle model of fission yeast developed by Novak and Tyson...