- mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycleNicola Soranzo
SISSA, Via Beirut 4, 34014 Trieste, Italy
BMC Syst Biol 3:18. 2009..In yeast, genome-wide periodic patterns associated with energy-metabolic oscillations have been shown recently for both short (approx. 40 min) and long (approx. 300 min) periods...
- ERNEST: a toolbox for chemical reaction network theoryNicola Soranzo
SISSA, 34151 Trieste, Italy
Bioinformatics 25:2853-4. 2009..The results obtained are independent of the rate constants of the reactions, and can be used for model discrimination...
- Discerning static and causal interactions in genome-wide reverse engineering problemsMattia Zampieri
SISSA ISAS, International School for Advanced Studies, Via Beirut 2 4, 34014 Trieste, Italy
Bioinformatics 24:1510-5. 2008..The aim is to infer gene-gene interactions in an increasingly sophisticated and reliable way through the continuous improvement of reverse engineering algorithms exploiting microarray data...
- Decompositions of large-scale biological systems based on dynamical propertiesNicola Soranzo
CRS4 Bioinformatica, Loc Piscina Manna, 09010 PULA CA, Italy
Bioinformatics 28:76-83. 2012..Given a large-scale biological network represented as an influence graph, in this article we investigate possible decompositions of the network aimed at highlighting specific dynamical properties...