Robert Hoehndorf

Summary

Publications

  1. pmc Evaluation of research in biomedical ontologies
    Robert Hoehndorf
    Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK
    Brief Bioinform 14:696-712. 2013
  2. pmc Representing physiological processes and their participants with PhysioMaps
    Daniel L Cook
    Biomedical and Health Informatics, Univ, of Washington, USA
    J Biomed Semantics 4:S2. 2013
  3. pmc Applying the functional abnormality ontology pattern to anatomical functions
    Robert Hoehndorf
    Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany
    J Biomed Semantics 1:4. 2010
  4. pmc The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions
    Bernard de Bono
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
    BMC Res Notes 4:313. 2011
  5. pmc The ontology of biological sequences
    Robert Hoehndorf
    Research Group Ontologies in Medicine, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Haertelstrasse 16 18, 04107 Leipzig, Germany
    BMC Bioinformatics 10:377. 2009
  6. pmc BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology
    Robert Hoehndorf
    Department of Computer Science, Faculty of Mathematics and Computer Science, University of Leipzig, Johannisgasse 26, 04103 Leipzig, Germany
    BMC Bioinformatics 10:S5. 2009
  7. pmc Mouse model phenotypes provide information about human drug targets
    Robert Hoehndorf
    Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth SY23 2AX, Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada and Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK
    Bioinformatics 30:719-25. 2014
  8. ncbi request reprint A top-level ontology of functions and its application in the Open Biomedical Ontologies
    Patryk Burek
    Department of Computer Science, Faculty of Mathematics and Computer Science, University of Leipzig, Augustusplatz 10 11, 04109 Leipzig
    Bioinformatics 22:e66-73. 2006
  9. pmc OBML - Ontologies in Biomedicine and Life Sciences
    Heinrich Herre
    Institute for Medical Informatics, Statistics and Epidemiology IMISE, University of Leipzig, Haertelstrasse 16 18, 04107 Leipzig, Germany
    J Biomed Semantics 2:I1. 2011
  10. doi request reprint Best behaviour? Ontologies and the formal description of animal behaviour
    Georgios V Gkoutos
    Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth, SY23 2AX, UK
    Mamm Genome 26:540-7. 2015

Collaborators

Detail Information

Publications13

  1. pmc Evaluation of research in biomedical ontologies
    Robert Hoehndorf
    Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, SY23 3DB, UK
    Brief Bioinform 14:696-712. 2013
    ..The objective, quantifiable comparison of research results based on scientific applications opens up the possibility for systematically improving the utility of ontologies in biomedical research. ..
  2. pmc Representing physiological processes and their participants with PhysioMaps
    Daniel L Cook
    Biomedical and Health Informatics, Univ, of Washington, USA
    J Biomed Semantics 4:S2. 2013
    ..Unfortunately, current resources-databases, simulation models, and knowledge bases, for example-are only occasionally and idiosyncratically explicit about the semantics of the biological entities and processes that they describe...
  3. pmc Applying the functional abnormality ontology pattern to anatomical functions
    Robert Hoehndorf
    Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany
    J Biomed Semantics 1:4. 2010
    ..abstract:..
  4. pmc The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions
    Bernard de Bono
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
    BMC Res Notes 4:313. 2011
    ..abstract:..
  5. pmc The ontology of biological sequences
    Robert Hoehndorf
    Research Group Ontologies in Medicine, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Haertelstrasse 16 18, 04107 Leipzig, Germany
    BMC Bioinformatics 10:377. 2009
    ....
  6. pmc BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology
    Robert Hoehndorf
    Department of Computer Science, Faculty of Mathematics and Computer Science, University of Leipzig, Johannisgasse 26, 04103 Leipzig, Germany
    BMC Bioinformatics 10:S5. 2009
    ..The combination of a collaborative web-based platform with logic-based approaches and Semantic Web technology can be used to address some of these challenges and concerns...
  7. pmc Mouse model phenotypes provide information about human drug targets
    Robert Hoehndorf
    Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth SY23 2AX, Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada and Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK
    Bioinformatics 30:719-25. 2014
    ..One set of resources that has been relatively neglected for drug repurposing is animal model phenotype...
  8. ncbi request reprint A top-level ontology of functions and its application in the Open Biomedical Ontologies
    Patryk Burek
    Department of Computer Science, Faculty of Mathematics and Computer Science, University of Leipzig, Augustusplatz 10 11, 04109 Leipzig
    Bioinformatics 22:e66-73. 2006
    ..Using the existing biomedical ontologies it has been impossible to capture the complexity of the community's knowledge about biological functions...
  9. pmc OBML - Ontologies in Biomedicine and Life Sciences
    Heinrich Herre
    Institute for Medical Informatics, Statistics and Epidemiology IMISE, University of Leipzig, Haertelstrasse 16 18, 04107 Leipzig, Germany
    J Biomed Semantics 2:I1. 2011
    ..The next event emphasizes the special topic of the ontology of phenotypes, in Berlin, Germany on October 6-7, 2011...
  10. doi request reprint Best behaviour? Ontologies and the formal description of animal behaviour
    Georgios V Gkoutos
    Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth, SY23 2AX, UK
    Mamm Genome 26:540-7. 2015
    ..In this commentary, we discuss some of the fundamental problems in designing and using behaviour ontologies, and present some of the best developed tools in this domain. ..
  11. pmc Towards improving phenotype representation in OWL
    Frank Loebe
    Department of Computer Science, University of Leipzig, 04103 Leipzig, Germany
    J Biomed Semantics 3:S5. 2012
    ..EQ-based definitions have been developed for many phenotype ontologies, including the Human and Mammalian Phenotype ontologies...
  12. pmc Statistical tests for associations between two directed acyclic graphs
    Robert Hoehndorf
    Research Group Ontologies in Medicine, Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany
    PLoS ONE 5:e10996. 2010
    ..Through a manual and an automatic evaluation, we show that our tests discover biologically relevant relations. The suite of statistical tests we develop for this purpose is implemented and freely available for download...
  13. doi request reprint Analyzing gene expression data in mice with the Neuro Behavior Ontology
    Robert Hoehndorf
    Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth, SY23 2AX, UK
    Mamm Genome 25:32-40. 2014
    ....