Boris Macek

Summary

Country: Germany

Publications

  1. pmc The neuropeptide complement of the marine annelid Platynereis dumerilii
    Markus Conzelmann
    Max Planck Institute for Developmental Biology, Spemannstrasse 35, 72076, Tubingen, Germany
    BMC Genomics 14:906. 2013
  2. doi request reprint Site-specific analysis of bacterial phosphoproteomes
    Boris Macek
    Proteome Center Tuebingen, University of Tuebingen, Germany
    Proteomics 11:3002-11. 2011
  3. pmc Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments
    Karsten Krug
    Proteome Center Tuebingen, University of Tuebingen, 72076 Tuebingen, Germany
    Mol Cell Proteomics 12:3420-30. 2013
  4. doi request reprint Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium
    Nelson C Soares
    Proteome Center Tuebingen, University of Tuebingen, Germany
    J Proteome Res 12:2611-21. 2013
  5. doi request reprint Mass spectrometry at the interface of proteomics and genomics
    Karsten Krug
    Proteome Center Tuebingen, Interdepartmental Institute for Cell Biology, University of Tuebingen, Auf der Morgenstelle 15, 72076 Tuebingen, Germany
    Mol Biosyst 7:284-91. 2011
  6. doi request reprint Construction and assessment of individualized proteogenomic databases for large-scale analysis of nonsynonymous single nucleotide variants
    Karsten Krug
    Proteome Center Tuebingen, University of Tuebingen, Germany
    Proteomics 14:2699-708. 2014
  7. pmc Quantitative phosphoproteome analysis of Bacillus subtilis reveals novel substrates of the kinase PrkC and phosphatase PrpC
    Vaishnavi Ravikumar
    From the Proteome Center Tuebingen, Interfaculty Institute for Cell Biology, University of Tuebingen, Germany
    Mol Cell Proteomics 13:1965-78. 2014
  8. doi request reprint Proteomics reveals evidence of cross-talk between protein modifications in bacteria: focus on acetylation and phosphorylation
    Boumediene Soufi
    Proteome Center Tuebingen, University of Tuebingen, Germany
    Curr Opin Microbiol 15:357-63. 2012
  9. doi request reprint Resources for Assignment of Phosphorylation Sites on Peptides and Proteins
    Vaishnavi Ravikumar
    Proteome Center Tuebingen, Interfaculty Institute for Cell Biology, University of Tuebingen, Auf der Morgenstelle 15, 72076, Tubingen, Germany
    Methods Mol Biol 1355:293-306. 2016
  10. pmc Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast)
    Alejandro Carpy
    From the Proteome Center Tuebingen, University of Tuebingen, Tuebingen 72076, Germany
    Mol Cell Proteomics 13:1925-36. 2014

Collaborators

  • Ivan Mijakovic
  • Silke Hauf
  • Lei Shi
  • Iain M Hagan
  • Alfred Nordheim
  • Angelika Hausser
  • Carsten Jers
  • Karsten Krug
  • Alejandro Carpy
  • Boumediene Soufi
  • Vaishnavi Ravikumar
  • Nelson C Soares
  • Mirita Franz-Wachtel
  • Sasa Popic
  • Markus Conzelmann
  • Avinash Patel
  • Ye Dee Tay
  • Christoph Taumer
  • Abderahmane Derouiche
  • Ahasanul Kobir
  • Charlotte Cousin
  • Sabine Graf
  • Andre Koch
  • Katarina Matić
  • Gaspar Jekely
  • Philipp Spät
  • Elizabeth A Williams
  • Gesa Behrends
  • Stephan A Eisler
  • Silke Wahl
  • Klaus Pfizenmaier
  • Sven Nahnsen

Detail Information

Publications14

  1. pmc The neuropeptide complement of the marine annelid Platynereis dumerilii
    Markus Conzelmann
    Max Planck Institute for Developmental Biology, Spemannstrasse 35, 72076, Tubingen, Germany
    BMC Genomics 14:906. 2013
    ..Despite these advances, comprehensive peptidome resources have yet to be reported...
  2. doi request reprint Site-specific analysis of bacterial phosphoproteomes
    Boris Macek
    Proteome Center Tuebingen, University of Tuebingen, Germany
    Proteomics 11:3002-11. 2011
    ....
  3. pmc Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments
    Karsten Krug
    Proteome Center Tuebingen, University of Tuebingen, 72076 Tuebingen, Germany
    Mol Cell Proteomics 12:3420-30. 2013
    ....
  4. doi request reprint Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium
    Nelson C Soares
    Proteome Center Tuebingen, University of Tuebingen, Germany
    J Proteome Res 12:2611-21. 2013
    ..Interestingly, the phosphoproteome analysis showed a global increase of protein phosphorylation levels in the late stationary phase, pointing to a likely role of this modification in later phases of growth...
  5. doi request reprint Mass spectrometry at the interface of proteomics and genomics
    Karsten Krug
    Proteome Center Tuebingen, Interdepartmental Institute for Cell Biology, University of Tuebingen, Auf der Morgenstelle 15, 72076 Tuebingen, Germany
    Mol Biosyst 7:284-91. 2011
    ..Here we provide an overview of the field and argue that the latest mass spectrometry technologies that enable high mass accuracy at high acquisition rates will prove to be especially well suited for proteogenomics applications...
  6. doi request reprint Construction and assessment of individualized proteogenomic databases for large-scale analysis of nonsynonymous single nucleotide variants
    Karsten Krug
    Proteome Center Tuebingen, University of Tuebingen, Germany
    Proteomics 14:2699-708. 2014
    ..We conclude that prediction of reading frame and, if applicable, SNV effect result in comprehensive yet compact databases necessary to retain sensitivity in large-scale analysis of nsSNVs called from transcriptomics data. ..
  7. pmc Quantitative phosphoproteome analysis of Bacillus subtilis reveals novel substrates of the kinase PrkC and phosphatase PrpC
    Vaishnavi Ravikumar
    From the Proteome Center Tuebingen, Interfaculty Institute for Cell Biology, University of Tuebingen, Germany
    Mol Cell Proteomics 13:1965-78. 2014
    ..Our results present the most detailed phosphoproteomic analysis of B. subtilis growth to date and provide the first global in vivo screen of PrkC and PrpC substrates. ..
  8. doi request reprint Proteomics reveals evidence of cross-talk between protein modifications in bacteria: focus on acetylation and phosphorylation
    Boumediene Soufi
    Proteome Center Tuebingen, University of Tuebingen, Germany
    Curr Opin Microbiol 15:357-63. 2012
    ..In this review, we provide an overview of the large-scale studies involving protein phosphorylation and acetylation in bacteria and discuss some of the current examples of cross-talk between these and other bacterial modifications...
  9. doi request reprint Resources for Assignment of Phosphorylation Sites on Peptides and Proteins
    Vaishnavi Ravikumar
    Proteome Center Tuebingen, Interfaculty Institute for Cell Biology, University of Tuebingen, Auf der Morgenstelle 15, 72076, Tubingen, Germany
    Methods Mol Biol 1355:293-306. 2016
    ....
  10. pmc Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast)
    Alejandro Carpy
    From the Proteome Center Tuebingen, University of Tuebingen, Tuebingen 72076, Germany
    Mol Cell Proteomics 13:1925-36. 2014
    ..Accordingly, we observe that phosphate transporters and phosphate-metabolizing enzymes are phosphorylated and therefore likely to be regulated in mitosis. ..
  11. doi request reprint Stable isotope labeling by amino acids applied to bacterial cell culture
    Boumediene Soufi
    Proteome Center Tuebingen, University of Tuebingen, Auf der Morgenstelle 15, Tuebingen, 72076, Germany
    Methods Mol Biol 1188:9-22. 2014
    ....
  12. pmc Nic1 inactivation enables stable isotope labeling with 13C615N4-arginine in Schizosaccharomyces pombe
    Alejandro Carpy
    From the Proteome Center Tuebingen, University of Tuebingen, Tuebingen, 72076, Germany
    Mol Cell Proteomics 14:243-50. 2015
    ..pombe. Finally, we employed Arg-10 in a triple-SILAC experiment to perform quantitative comparison of G1 + S, M, and G2 cell cycle phases in S. pombe...
  13. doi request reprint Global analysis of bacterial membrane proteins and their modifications
    Boumediene Soufi
    Proteome Center Tuebingen, Interfaculty Institute for Cell Biology, University of Tuebingen, Auf der Morgenstelle 15, 72076 Tuebingen, Germany Electronic address
    Int J Med Microbiol 305:203-8. 2015
    ....
  14. pmc Global detection of protein kinase D-dependent phosphorylation events in nocodazole-treated human cells
    Mirita Franz-Wachtel
    Proteome Center Tuebingen, University of Tuebingen, Tuebingen, Germany
    Mol Cell Proteomics 11:160-70. 2012
    ..This study presents the first global detection of PKD1-dependent phosphorylation events and provides a wealth of information for functional follow-up of PKD1 activity upon disruption of the Golgi network in human cells...