S Dusko Ehrlich

Summary

Affiliation: Institut National de la Recherche Agronomique
Country: France

Publications

  1. doi request reprint The human gut microbiome impacts health and disease
    Stanislav Dusko Ehrlich
    Metagenopolis, INRA, 78350 Jouy en Josas, France Electronic address
    C R Biol 339:319-23. 2016
  2. pmc Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
    Mathieu Almeida
    Institut National de la Recherche Agronomique, UMR 1319 Micalis, 78352 Jouy en Josas, France
    BMC Genomics 15:1101. 2014
  3. pmc Activation of mRNA translation by phage protein and low temperature: the case of Lactococcus lactis abortive infection system AbiD1
    Elena Bidnenko
    Laboratoire de Genetique Microbienne, INRA, 78352 Jouy en Josas, France
    BMC Mol Biol 10:4. 2009
  4. pmc Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract
    Pierre Nicolas
    INRA, Mathématique Informatique et Génome, UR1077, 78350 Jouy en Josas, France
    BMC Evol Biol 7:141. 2007
  5. doi request reprint [Metagenomics of the intestinal microbiota: potential applications]
    S Dusko Ehrlich
    Institut National de la Recherche Agronomique, MetaHIT coordinator, Microbiology and the Food Chain Division, Jouy en Josas, France
    Gastroenterol Clin Biol 34:S23-8. 2010
  6. pmc Quality control of microbiota metagenomics by k-mer analysis
    Florian Plaza Onate
    INRA, Institut National de la Recherche Agronomique, US1367 Metagenopolis, 78350, Jouy en Josas, France
    BMC Genomics 16:183. 2015
  7. doi request reprint Richness of human gut microbiome correlates with metabolic markers
    Emmanuelle Le Chatelier
    INRA, Institut National de la Recherche Agronomique, US1367 Metagenopolis, 78350 Jouy en Josas, France
    Nature 500:541-6. 2013
  8. doi request reprint Quality control of microbiota metagenomics by k-mer analysis
    Florian Plaza Onate
    INRA, Institut National de la Recherche Agronomique, US1367 Metagenopolis, 78350, Jouy en Josas, France
    BMC Genomics 16:1406. 2015

Collaborators

  • Catherine Juste
  • Michiel Kleerebezem
  • Peer Bork
  • Chaysavanh Manichanh
  • Christine Delorme
  • Francisco Guarner
  • Francesc Casellas
  • Maria Rescigno
  • Karine Clement
  • Takuji Yamada
  • Jun Wang
  • Willem M de Vos
  • Yan Zhou
  • Jean Frederic Colombel
  • Niels Grarup
  • Muriel Derrien
  • Torben Jørgensen
  • Nicolas Pons
  • Jean Michel Batto
  • Florian Plaza Onate
  • Sean Kennedy
  • Joel Dore
  • Florence Levenez
  • Mathieu Almeida
  • Pierre Renault
  • Maarten van de Guchte
  • Emmanuelle Maguin
  • Doriane Gouas
  • Martin Larsen
  • Jehane Fadlallah
  • Cyrielle Fougeroux
  • Guy Gorochov
  • Simon Rasmussen
  • Pierre Leonard
  • Emmanuelle Le Chatelier
  • Marion Leclerc
  • Manimozhiyan Arumugam
  • Eric Guedon
  • Encarna Varela
  • Torben Hansen
  • Marcelo Bertalan
  • Hervé Blottiere
  • Severine Layec
  • Gérard Denariaz
  • Trine Nielsen
  • Jan Knol
  • Florence Haimet
  • Sebastian Tims
  • Keith Turner
  • Antonella Cultrone
  • Nicolas Sanchez
  • Junhua Li
  • Christian Brechot
  • Rozenn Dervyn
  • Karsten Kristiansen
  • Jean Weissenbach
  • Thomas Sicheritz-Ponten
  • Julian Parkhill
  • Raish Oozeer
  • Maria Antolin
  • Thomas Bruls
  • Alexandre Jamet
  • François Artiguenave
  • Søren Brunak
  • Oluf Pedersen
  • Eric Pelletier
  • Jeroen Raes
  • Junjie Qin
  • S Dusko Ehrlich
  • Elena Bidnenko
  • Pierre Nicolas
  • Agnès Hébert
  • Mihai Pop
  • Anne Laure Abraham
  • Francoise Irlinger
  • Marie Christine Montel
  • Christophe Monnet
  • Valentin Loux
  • Celine Delbes
  • Shinichi Sunagawa
  • Henrik Bjørn Nielsen
  • Gaetana Vandemeulebrouck
  • Patrick Veiga
  • Falk Hildebrand
  • Christine M'rini
  • Alexandre Mérieux
  • Jean Daniel Zucker
  • Johan E T van Hylckama Vlieg
  • Denis LePaslier
  • Antonio Torrejon

Detail Information

Publications8

  1. doi request reprint The human gut microbiome impacts health and disease
    Stanislav Dusko Ehrlich
    Metagenopolis, INRA, 78350 Jouy en Josas, France Electronic address
    C R Biol 339:319-23. 2016
    ..This lays ground for developing new approaches to better restore and even preserve the health by modulation of the altered microbiome, which contributes to promote or aggravate a disease. ..
  2. pmc Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
    Mathieu Almeida
    Institut National de la Recherche Agronomique, UMR 1319 Micalis, 78352 Jouy en Josas, France
    BMC Genomics 15:1101. 2014
    ..Such analyses, however, critically depend on the availability of appropriate reference genome databases against which the sequencing reads can be aligned...
  3. pmc Activation of mRNA translation by phage protein and low temperature: the case of Lactococcus lactis abortive infection system AbiD1
    Elena Bidnenko
    Laboratoire de Genetique Microbienne, INRA, 78352 Jouy en Josas, France
    BMC Mol Biol 10:4. 2009
    ..We previously showed that development of AbiD1 abortive infection against phage bIL66 depends on orf1, which is expressed in mid-infection. However, molecular basis for this activation remains unclear...
  4. pmc Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract
    Pierre Nicolas
    INRA, Mathématique Informatique et Génome, UR1077, 78350 Jouy en Josas, France
    BMC Evol Biol 7:141. 2007
    ..bulgaricus), is ambiguous due to contradictory phenotypical and 16S rRNA based classifications...
  5. doi request reprint [Metagenomics of the intestinal microbiota: potential applications]
    S Dusko Ehrlich
    Institut National de la Recherche Agronomique, MetaHIT coordinator, Microbiology and the Food Chain Division, Jouy en Josas, France
    Gastroenterol Clin Biol 34:S23-8. 2010
    ..These should lead to the speedy development of diagnostic and prognostic tools and open avenues to reasoned approaches to the modulation of the individual's microbiota in order to optimize health and well-being...
  6. pmc Quality control of microbiota metagenomics by k-mer analysis
    Florian Plaza Onate
    INRA, Institut National de la Recherche Agronomique, US1367 Metagenopolis, 78350, Jouy en Josas, France
    BMC Genomics 16:183. 2015
    ..Here we demonstrate that the distribution of overlapping k-mers of metagenome sequence data predicts sequence quality as defined by gene distribution and efficiency of sequence mapping to a reference gene catalogue...
  7. doi request reprint Richness of human gut microbiome correlates with metabolic markers
    Emmanuelle Le Chatelier
    INRA, Institut National de la Recherche Agronomique, US1367 Metagenopolis, 78350 Jouy en Josas, France
    Nature 500:541-6. 2013
    ..Our classifications based on variation in the gut microbiome identify subsets of individuals in the general white adult population who may be at increased risk of progressing to adiposity-associated co-morbidities. ..
  8. doi request reprint Quality control of microbiota metagenomics by k-mer analysis
    Florian Plaza Onate
    INRA, Institut National de la Recherche Agronomique, US1367 Metagenopolis, 78350, Jouy en Josas, France
    BMC Genomics 16:1406. 2015
    ..Here we demonstrate that the distribution of overlapping k-mers of metagenome sequence data predicts sequence quality as defined by gene distribution and efficiency of sequence mapping to a reference gene catalogue...