Jérôme Fuchs

Summary

Country: France

Publications

  1. doi Rapid diversification of falcons (Aves: Falconidae) due to expansion of open habitats in the Late Miocene
    Jérôme Fuchs
    Department of Ornithology and Mammalogy, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, United States UMR7205, Institut de Systématique, Evolution, Biodiversité, CNRS MNHN UPMC EPHE, Departement Systematique et Evolution, Museum national d histoire naturelle, 57 rue Cuvier, Case Postale 51, F 75231 Paris Cedex 05, France UMS MNHN CNRS 2700, Outils et Méthodes de la Systématique Intégrative OMSI, Museum national d histoire naturelle, 57 rue Cuvier, F 75231 Paris Cedex 05, France Electronic address
    Mol Phylogenet Evol 82:166-82. 2015
  2. doi Biogeography and diversification dynamics of the African woodpeckers
    Jérôme Fuchs
    UMR7205 Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE, Sorbonne Universités, Museum national d histoire naturelle, CP 51, 57 rue Cuvier, F 75231 Paris Cedex 05, France DST NRF Centre of Excellence at the Percy FitzPatrick Institute, University of Cape Town, Rondebosch, 7701, South Africa Electronic address
    Mol Phylogenet Evol . 2017
  3. doi A new classification of the Pied Woodpeckers assemblage (Dendropicini, Picidae) based on a comprehensive multi-locus phylogeny
    Jérôme Fuchs
    UMR 7205 Institut de Systématique, Evolution, Biodiversité, CNRS, MNHN, UPMC, EPHE, Sorbonne Universités, Departement Systematique et Evolution, Museum national d histoire naturelle, CP 51, 57 rue Cuvier, F 75231 Paris Cedex 05, France UMS MNHN CNRS 2700, Outils et Méthodes de la Systématique Intégrative OMSI, Museum national d histoire naturelle, 57 rue Cuvier, F 75231 Paris Cedex 05, France Electronic address
    Mol Phylogenet Evol 88:28-37. 2015
  4. doi Concordant genetic structure in two species of woodpecker distributed across the primary West African biogeographic barriers
    Jérôme Fuchs
    UMR7205 Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE, Museum national d histoire naturelle, Sorbonne Universités, CP 51, 57 rue Cuvier, F 75231 Paris Cedex 05, France UMS MNHN CNRS 2700 Outils et Méthodes de la Systématique Intégrative OMSI, Museum national d histoire naturelle, 57 rue Cuvier, F 75231 Paris Cedex 05, France Museum of Vertebrate Zoology and Department of Integrative Biology, 3101 Valley Life Science Building, University of California, Berkeley, CA 94720 3160, USA DST NRF Centre of Excellence at the Percy FitzPatrick Institute, University of Cape Town, Rondebosch, 7701 Cape Town, South Africa Electronic address
    Mol Phylogenet Evol 88:64-74. 2015
  5. doi A multi-locus phylogeny suggests an ancient hybridization event between Campephilus and melanerpine woodpeckers (Aves: Picidae)
    Jérôme Fuchs
    UMR7205, Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 67:578-88. 2013
  6. ncbi The African warbler genus Hyliota as a lost lineage in the Oscine songbird tree: molecular support for an African origin of the Passerida
    Jérôme Fuchs
    UMR5202, Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 39:186-97. 2006
  7. ncbi Complex biogeographic history of the cuckoo-shrikes and allies (Passeriformes: Campephagidae) revealed by mitochondrial and nuclear sequence data
    Jérôme Fuchs
    Departement Systematique et Evolution, UMR5202, Origine, Structure et Evolution de la Biodiversité, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 44:138-53. 2007
  8. ncbi Phylogenetic relationships of the African bush-shrikes and helmet-shrikes (Passeriformes: Malaconotidae)
    Jérôme Fuchs
    FRE 2695 Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 33:428-39. 2004
  9. doi A new Indo-Malayan member of the Stenostiridae (Aves: Passeriformes) revealed by multilocus sequence data: biogeographical implications for a morphologically diverse clade of flycatchers
    Jérôme Fuchs
    Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720 3160, USA
    Mol Phylogenet Evol 53:384-93. 2009
  10. doi Molecular phylogeny of African bush-shrikes and allies: tracing the biogeographic history of an explosive radiation of corvoid birds
    Jérôme Fuchs
    Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720 3160, USA
    Mol Phylogenet Evol 64:93-105. 2012

Collaborators

Detail Information

Publications18

  1. doi Rapid diversification of falcons (Aves: Falconidae) due to expansion of open habitats in the Late Miocene
    Jérôme Fuchs
    Department of Ornithology and Mammalogy, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, United States UMR7205, Institut de Systématique, Evolution, Biodiversité, CNRS MNHN UPMC EPHE, Departement Systematique et Evolution, Museum national d histoire naturelle, 57 rue Cuvier, Case Postale 51, F 75231 Paris Cedex 05, France UMS MNHN CNRS 2700, Outils et Méthodes de la Systématique Intégrative OMSI, Museum national d histoire naturelle, 57 rue Cuvier, F 75231 Paris Cedex 05, France Electronic address
    Mol Phylogenet Evol 82:166-82. 2015
    ..Concomitantly, Falco lineages that are distributed primarily in grassland or savannah habitats, as opposed to woodlands, and exhibit migratory, as opposed to sedentary, behavior experienced a higher diversification rate. ..
  2. doi Biogeography and diversification dynamics of the African woodpeckers
    Jérôme Fuchs
    UMR7205 Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE, Sorbonne Universités, Museum national d histoire naturelle, CP 51, 57 rue Cuvier, F 75231 Paris Cedex 05, France DST NRF Centre of Excellence at the Percy FitzPatrick Institute, University of Cape Town, Rondebosch, 7701, South Africa Electronic address
    Mol Phylogenet Evol . 2017
    ....
  3. doi A new classification of the Pied Woodpeckers assemblage (Dendropicini, Picidae) based on a comprehensive multi-locus phylogeny
    Jérôme Fuchs
    UMR 7205 Institut de Systématique, Evolution, Biodiversité, CNRS, MNHN, UPMC, EPHE, Sorbonne Universités, Departement Systematique et Evolution, Museum national d histoire naturelle, CP 51, 57 rue Cuvier, F 75231 Paris Cedex 05, France UMS MNHN CNRS 2700, Outils et Méthodes de la Systématique Intégrative OMSI, Museum national d histoire naturelle, 57 rue Cuvier, F 75231 Paris Cedex 05, France Electronic address
    Mol Phylogenet Evol 88:28-37. 2015
    ..Based on our phylogenetic results, we propose a new classification of the Dendropicini that recognizes nine genera. ..
  4. doi Concordant genetic structure in two species of woodpecker distributed across the primary West African biogeographic barriers
    Jérôme Fuchs
    UMR7205 Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE, Museum national d histoire naturelle, Sorbonne Universités, CP 51, 57 rue Cuvier, F 75231 Paris Cedex 05, France UMS MNHN CNRS 2700 Outils et Méthodes de la Systématique Intégrative OMSI, Museum national d histoire naturelle, 57 rue Cuvier, F 75231 Paris Cedex 05, France Museum of Vertebrate Zoology and Department of Integrative Biology, 3101 Valley Life Science Building, University of California, Berkeley, CA 94720 3160, USA DST NRF Centre of Excellence at the Percy FitzPatrick Institute, University of Cape Town, Rondebosch, 7701 Cape Town, South Africa Electronic address
    Mol Phylogenet Evol 88:64-74. 2015
    ..5 myr BP. No genetic structure was recovered among sampled populations in either the Upper or the Lower Guinea Forest Block for both species, despite the considerable geographic area covered. ..
  5. doi A multi-locus phylogeny suggests an ancient hybridization event between Campephilus and melanerpine woodpeckers (Aves: Picidae)
    Jérôme Fuchs
    UMR7205, Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 67:578-88. 2013
    ..Yet, further work with a denser sampling of loci is necessary to evaluate the extant of the Sphyrapicus/Melanerpes lineage nuclear genome that introgressed into the Campephilus genome...
  6. ncbi The African warbler genus Hyliota as a lost lineage in the Oscine songbird tree: molecular support for an African origin of the Passerida
    Jérôme Fuchs
    UMR5202, Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 39:186-97. 2006
    ..Our results, which also include analyses of relationships among other of other atypical songbird genera, lend support to an African origin of the Passerida songbird radiation...
  7. ncbi Complex biogeographic history of the cuckoo-shrikes and allies (Passeriformes: Campephagidae) revealed by mitochondrial and nuclear sequence data
    Jérôme Fuchs
    Departement Systematique et Evolution, UMR5202, Origine, Structure et Evolution de la Biodiversité, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 44:138-53. 2007
    ..The African stock of cuckoo-shrikes is likely the result of three independent trans-oceanic dispersals from Australasia...
  8. ncbi Phylogenetic relationships of the African bush-shrikes and helmet-shrikes (Passeriformes: Malaconotidae)
    Jérôme Fuchs
    FRE 2695 Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 33:428-39. 2004
    ..Monophyly of the genus Chlorophoneus was never recovered, a result that is consistent with morphological data...
  9. doi A new Indo-Malayan member of the Stenostiridae (Aves: Passeriformes) revealed by multilocus sequence data: biogeographical implications for a morphologically diverse clade of flycatchers
    Jérôme Fuchs
    Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720 3160, USA
    Mol Phylogenet Evol 53:384-93. 2009
    ..Given that the Stenostiridae assemblage has been consistently recovered by independent studies, we clarify its taxonomic validity under the rules of the International Code of Zoological Nomenclature...
  10. doi Molecular phylogeny of African bush-shrikes and allies: tracing the biogeographic history of an explosive radiation of corvoid birds
    Jérôme Fuchs
    Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720 3160, USA
    Mol Phylogenet Evol 64:93-105. 2012
    ..7 mya, shedding new light on the origins of the Afrotropical avifauna...
  11. pmc Tracing the colonization history of the Indian Ocean scops-owls (Strigiformes: Otus) with further insight into the spatio-temporal origin of the Malagasy avifauna
    Jérôme Fuchs
    UMR5202, Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    BMC Evol Biol 8:197. 2008
    ..We also compare the pattern and timing of colonization of the Indian Ocean islands by scops-owls with divergence times already proposed for other bird taxa...
  12. doi Molecular support for a rapid cladogenesis of the woodpecker clade Malarpicini, with further insights into the genus Picus (Piciformes: Picinae)
    Jérôme Fuchs
    UMR5202 Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 48:34-46. 2008
    ..We attribute this pattern of incongruent indels, together with short internodes in the tree, to incomplete lineage sorting...
  13. ncbi Evolutionary history and biogeography of the drongos (Dicruridae), a tropical Old World clade of corvoid passerines
    Eric Pasquet
    UMR5202 Origine, Structure et Evolution de la Biodiversité, Departement Systematique et Evolution, Museum national d histoire naturelle, 55 rue Buffon, 75005 Paris, France
    Mol Phylogenet Evol 45:158-67. 2007
    ..At 5Myr, Principe and Indian Ocean Islands have been colonized from an African ancestor; the most recent colonization event concerned Anjouan by an immigrating population from Madagascar...
  14. doi The complex phylogeography of the Indo-Malayan Alophoixus bulbuls with the description of a putative new ring species complex
    Jérôme Fuchs
    Departement Systematique et Evolution, UMR7205 Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE, Sorbonne Universités, Museum national d histoire naturelle, CP 51, 57 rue Cuvier, F 75231, Paris Cedex 05, France
    Mol Ecol 24:5460-74. 2015
    ..To our knowledge, the Alophoixus bulbuls represent the first case of a putative broken ring species complex in Indo-Malaya. We also discuss the implications of our results on our understanding of the biogeography in Indo-Malaya. ..
  15. pmc Diversification across an altitudinal gradient in the Tiny Greenbul (Phyllastrephus debilis) from the Eastern Arc Mountains of Africa
    Jérôme Fuchs
    Museum of Vertebrate Zoology and Department of Integrative Biology, 3101 Valley Life Science Building, University of California, Berkeley, CA 94720 3160, USA
    BMC Evol Biol 11:117. 2011
    ....
  16. doi Complete mitochondrial genomes of the white-browed piculet (Sasia ochracea, Picidae) and pale-billed woodpecker (Campephilus guatemalensis, Picidae)
    Jérôme Fuchs
    a Département Systématique et Evolution, Museum national d histoire naturelle, UMR7205 Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE, Sorbonne Universités, Paris, France, and
    Mitochondrial DNA A DNA Mapp Seq Anal 27:3640-1. 2016
    ....
  17. doi Pliocene diversification within the South American Forest falcons (Falconidae: Micrastur)
    Jérôme Fuchs
    Department of Ornithology and Mammalogy, California Academy of Science, 55 Music Concourse Drive, San Francisco, CA 94118, USA
    Mol Phylogenet Evol 60:398-407. 2011
    ..Hence our data allow us to formerly reject the classical Pleistocene refuge for Micrastur, Our divergence time estimates are younger that dates for the Miocene marine incursions, the riverine barrier and the Andean uplift hypotheses...
  18. pmc Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample
    Zachary R Hanna
    California Academy of Sciences, San Francisco, California, USA Department of Integrative Biology and Museum of Vertebrate Zoology, University of California Berkeley, Berkeley, California, USA
    Genome Announc 3:. 2015
    ..The genome is 2,152 bp in length and is most similar (30 to 44.5% amino acid identity) to the genome sequences of other single-stranded DNA (ssDNA) circular viruses belonging to the gemycircularvirus group. ..