Frédéric Delsuc

Summary

Country: France

Publications

  1. pmc Heterotachy and long-branch attraction in phylogenetics
    Hervé Philippe
    Canadian Institute for Advanced Research, Centre Robert Cedergren, Departement de Biochimie, Universite de Montreal, Succursale Centre Ville, Montreal, Quebec H3C3J7, Canada
    BMC Evol Biol 5:50. 2005
  2. pmc OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics
    Vincent Ranwez
    Universite Montpellier 2, CC064, Place Eugene Bataillon, 34 095 Montpellier Cedex 05, France
    BMC Evol Biol 7:241. 2007
  3. pmc The evolution of armadillos, anteaters and sloths depicted by nuclear and mitochondrial phylogenies: implications for the status of the enigmatic fossil Eurotamandua
    F Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Proc Biol Sci 268:1605-15. 2001
  4. pmc Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    BMC Evol Biol 4:11. 2004
  5. ncbi Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34 095 Montpellier Cedex 05, France
    J Mol Evol 57:S201-13. 2003
  6. ncbi [Molecular dating in the genomic era]
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Phylogénie et Paléobiologie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34095 Montpellier Cedex 05, France
    Med Sci (Paris) 22:374-80. 2006
  7. ncbi Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Mol Biol Evol 19:1656-71. 2002
  8. doi Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals
    Jonathan Romiguier
    CNRS, Universite Montpellier, Institut des Sciences de l Evolution, Montpellier, France
    Mol Biol Evol 30:2134-44. 2013
  9. doi Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)
    Fidel Botero-Castro
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    Mol Phylogenet Evol 69:728-39. 2013
  10. ncbi Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Mol Phylogenet Evol 28:261-75. 2003

Detail Information

Publications27

  1. pmc Heterotachy and long-branch attraction in phylogenetics
    Hervé Philippe
    Canadian Institute for Advanced Research, Centre Robert Cedergren, Departement de Biochimie, Universite de Montreal, Succursale Centre Ville, Montreal, Quebec H3C3J7, Canada
    BMC Evol Biol 5:50. 2005
    ....
  2. pmc OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics
    Vincent Ranwez
    Universite Montpellier 2, CC064, Place Eugene Bataillon, 34 095 Montpellier Cedex 05, France
    BMC Evol Biol 7:241. 2007
    ..Genomic data now provide the opportunity to select new markers that are potentially relevant for further resolving branches of the mammalian phylogenetic tree at various taxonomic levels...
  3. pmc The evolution of armadillos, anteaters and sloths depicted by nuclear and mitochondrial phylogenies: implications for the status of the enigmatic fossil Eurotamandua
    F Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Proc Biol Sci 268:1605-15. 2001
    ..They also question the placement of the purported fossil anteater (Eurotamandua) from the Middle Eocene period of Europe with the Vermilingua and instead suggest the independent and convergent evolution of this enigmatic taxon...
  4. pmc Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    BMC Evol Biol 4:11. 2004
    ....
  5. ncbi Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34 095 Montpellier Cedex 05, France
    J Mol Evol 57:S201-13. 2003
    ..Global clocks, local clocks, and quartet dating analyses suggested a Late Cretaceous origin of the crown placental clades followed by a Tertiary radiation of some placental orders like rodents...
  6. ncbi [Molecular dating in the genomic era]
    Emmanuel J P Douzery
    Laboratoire de Paléontologie, Phylogénie et Paléobiologie CC064, Institut des Sciences de l Evolution UMR 5554 CNRS, Universite Montpellier II, Place E Bataillon, 34095 Montpellier Cedex 05, France
    Med Sci (Paris) 22:374-80. 2006
    ..Among mammals, the initial diversification of major placental groups may have taken place around 100 Mya, well before the Cretaceous/Tertiary boundary marking the extinction of dinosaurs...
  7. ncbi Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Mol Biol Evol 19:1656-71. 2002
    ..By resampling taxa within Xenarthra, the conservative Shimodaira-Hasegawa likelihood-based test of alternative topologies was shown to be sensitive to both character and taxon sampling...
  8. doi Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals
    Jonathan Romiguier
    CNRS, Universite Montpellier, Institut des Sciences de l Evolution, Montpellier, France
    Mol Biol Evol 30:2134-44. 2013
    ..We argue that the GC content-because it is a reliable indicator of the long-term recombination rate-is an informative criterion that could help in identifying the most reliable molecular markers for species tree inference. ..
  9. doi Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)
    Fidel Botero-Castro
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    Mol Phylogenet Evol 69:728-39. 2013
    ..Our results illustrate the potential of the NGS mitogenomic approach for resolving the evolutionary history of phyllostomid bats based on a denser species sampling. ..
  10. ncbi Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes
    Frédéric Delsuc
    Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, Montpellier, France
    Mol Phylogenet Evol 28:261-75. 2003
    ..However, low statistical support values associated with almost equal distributions of apomorphies among alternatives suggested that two parallel events of rapid speciation occurred within these two armadillo subfamilies...
  11. doi Molecular phylogenetics unveils the ancient evolutionary origins of the enigmatic fairy armadillos
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier II, Place Eugene Bataillon, Montpellier, France
    Mol Phylogenet Evol 62:673-80. 2012
    ..Their phylogenetic distinctiveness and rarity in the wild argue in favor of high conservation priority...
  12. doi OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals
    Emmanuel J P Douzery
    Institut des Sciences de l Evolution de Montpellier ISE M, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    Mol Biol Evol 31:1923-8. 2014
    ..OrthoMaM is available for browsing, query and complete or filtered downloads at http://www.orthomam.univ-montp2.fr/. ..
  13. doi Fossil rhabdoviral sequences integrated into arthropod genomes: ontogeny, evolution, and potential functionality
    Philippe Fort
    Centre de Recherche de Biochimie Macromoleculaire, UMR 5237, CNRS, Universités Montpellier 2 et 1, Montpellier, France
    Mol Biol Evol 29:381-90. 2012
    ..They also suggest that like retroviruses, integrated rhabdoviral sequences may participate actively in the evolution of their hosts...
  14. pmc MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons
    Vincent Ranwez
    Institut des Sciences de l Evolution, UMR5554 CNRS, Universite Montpellier II, Montpellier, France
    PLoS ONE 6:e22594. 2011
    ..MACSE is distributed as an open-source java file executable with freely available source code and can be used via a web interface at: http://mbb.univ-montp2.fr/macse...
  15. doi Additional molecular support for the new chordate phylogeny
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR5554 CNRS, Universite Montpellier II, CC064, Place Eugene Bataillon, Montpellier Cedex 5, France
    Genesis 46:592-604. 2008
    ..The implications of these phylogenetic results for interpreting chordate evolution are discussed in light of recent advances from evolutionary developmental biology and genomics...
  16. pmc The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?
    Emmanuel J P Douzery
    Department of Paleontology, Phylogeny, and Paleobiology, Institut des Sciences de l Evolution Unité Mixte de Recherche 5554, Centre National de la Recherche Scientifique, Universite Montpellier II, Montpellier Cedex 5, France
    Proc Natl Acad Sci U S A 101:15386-91. 2004
    ....
  17. pmc An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models
    Georgia Tsagkogeorga
    Universite Montpellier 2, Institut des Sciences de l Evolution UMR 5554, CC064, Place Eugene Bataillon, 34095 Montpellier Cedex 05, France
    BMC Evol Biol 9:187. 2009
    ..Nonetheless, substantial uncertainty remains about the phylogenetic relationships and taxonomic status of key groups such as the Aplousobranchia, Appendicularia, and Thaliacea...
  18. doi The phylogenetic affinities of the extinct glyptodonts
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554, CNRS, IRD, EPHE, Universite de Montpellier, Montpellier, France Electronic address
    Curr Biol 26:R155-6. 2016
    ..Our results highlight the derived nature of the glyptodont morphotype, one aspect of which is a spectacular increase in body size until their extinction at the end of the last ice age. ..
  19. pmc PhyloExplorer: a web server to validate, explore and query phylogenetic trees
    Vincent Ranwez
    Institut des Sciences de l Evolution ISEM, UMR 5554 CNRS, Universite Montpellier II, Place E, Bataillon 34095 Montpellier Cedex 05, France
    BMC Evol Biol 9:108. 2009
    ..Moreover, although several databases of phylogenetic trees exist, there is currently no easy way to find trees that are both relevant and complementary to a given collection of trees...
  20. doi Thrice better than once: quality control guidelines to validate new mitogenomes
    Fidel Botero-Castro
    a Université Montpellier 2, CNRS and IRD, Institut des Sciences de l Evolution UMR 5554, Montpellier, France
    Mitochondrial DNA 27:449-54. 2016
    ....
  21. doi Convergence of gut microbiomes in myrmecophagous mammals
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR 5554 CNRS IRD, Universite Montpellier 2, Montpellier, France Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, 80309, USA BioFrontiers Institute, University of Colorado, Boulder, CO, 80309, USA
    Mol Ecol 23:1301-17. 2014
    ..This study sets the scene for future metagenomic studies aiming at evaluating potential convergence in functional gene content in the microbiomes of specialized mammalian myrmecophages...
  22. pmc Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
    Ylenia Chiari
    Institut des Sciences de l Evolution, UMR5554 CNRS IRD, Universite Montpellier 2, Montpellier, France
    BMC Biol 10:65. 2012
    ..Genome-scale data have been shown to be useful in resolving other debated phylogenies, but no such adequate dataset is yet available for amniotes...
  23. doi Diversification of Wolbachia endosymbiont in the Culex pipiens mosquito
    Celestine M Atyame
    Institut des Sciences de l Evolution, CNRS, UMR5554, Universite Montpellier 2, Place Eugene Bataillon, Montpellier, France
    Mol Biol Evol 28:2761-72. 2011
    ..In addition, multiple signatures of recombination were found in most wPip genomic regions, leading us to conclude that the mosaic nature of wPip genomes may play a key role in their evolution...
  24. doi Estimating maximum likelihood phylogenies with PhyML
    Stephane Guindon
    Laboratoire d Informatique, de Robotique et de Microélectronique de Montpellier LIRMM, UMR 5506 CNRS, Universite Montpellier II, Montpellier, France
    Methods Mol Biol 537:113-37. 2009
    ..We illustrate the strengths and pitfalls of this program through the analysis of a real data set. PhyML v3.0 is available from (http://atgc_montpellier.fr/phyml/)...
  25. pmc Evolution of proteasome regulators in eukaryotes
    Philippe Fort
    CNRS, CRBM, UMR5237, Montpellier, France Université de Montpellier, France
    Genome Biol Evol 7:1363-79. 2015
    ..The paramount conservation of PA700 composition in all eukaryotes and the dynamic evolution of PA200, PA28, and PI31 are discussed in the light of current knowledge on their physiological roles. ..
  26. pmc Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans
    Gillian C Gibb
    Institut des Sciences de l Evolution, UMR 5554, CNRS, IRD, EPHE, Universite de Montpellier, Montpellier, France Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand
    Mol Biol Evol 33:621-42. 2016
    ..Biogeographic reconstructions identified the tropical rainforest biome of Amazonia and the Guiana Shield as the cradle of xenarthran evolutionary history with subsequent dispersions into more open and dry habitats. ..
  27. doi Naked but not Hairless: the pitfalls of analyses of molecular adaptation based on few genome sequence comparisons
    Frédéric Delsuc
    Institut des Sciences de l Evolution, UMR5554, CNRS, IRD, Universite de Montpellier, France
    Genome Biol Evol 7:768-74. 2015
    ....