Jonathan A Eisen

Summary

Publications

  1. pmc New evolutionary frontiers from unusual virus genomes
    Christopher Desjardins
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20854, USA
    Genome Biol 6:212. 2005
  2. pmc Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements
    Martin Wu
    The Institute for Genomic Research, Rockville, Maryland, USA
    PLoS Biol 2:E69. 2004
  3. pmc Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters
    Dongying Wu
    The Institute for Genomic Research, Rockville, Maryland, USA
    PLoS Biol 4:e188. 2006
  4. pmc Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes
    Rekha Seshadri
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Proc Natl Acad Sci U S A 101:5646-51. 2004
  5. pmc Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
    Martin Wu
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Genet 1:e65. 2005
  6. ncbi request reprint Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
    Rekha Seshadri
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 307:105-8. 2005
  7. pmc Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
    Jonathan A Eisen
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Biol 4:e286. 2006
  8. pmc Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
    Kevin Penn
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Appl Environ Microbiol 72:1680-3. 2006
  9. pmc Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
    Robert S Coyne
    J Craig Venter Institute formerly The Institute for Genomic Research, 9704 Medical Center Dr, Rockville, MD, USA
    BMC Genomics 9:562. 2008
  10. ncbi request reprint Environmental genome shotgun sequencing of the Sargasso Sea
    J Craig Venter
    Institute for Biological Energy Alternatives, 1901 Research Boulevard, Rockville, MD 20850, USA
    Science 304:66-74. 2004

Detail Information

Publications17

  1. pmc New evolutionary frontiers from unusual virus genomes
    Christopher Desjardins
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20854, USA
    Genome Biol 6:212. 2005
    ..These and other unusual features challenge the way we view the evolution and definition of viruses...
  2. pmc Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements
    Martin Wu
    The Institute for Genomic Research, Rockville, Maryland, USA
    PLoS Biol 2:E69. 2004
    ..With the availability of the complete genomes of both species and excellent genetic tools for the host, the wMel-D. melanogaster symbiosis is now an ideal system for studying the biology and evolution of Wolbachia infections...
  3. pmc Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters
    Dongying Wu
    The Institute for Genomic Research, Rockville, Maryland, USA
    PLoS Biol 4:e188. 2006
    ..coagulata and other sharpshooters serve as vectors of transmission...
  4. pmc Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes
    Rekha Seshadri
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Proc Natl Acad Sci U S A 101:5646-51. 2004
    ....
  5. pmc Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901
    Martin Wu
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Genet 1:e65. 2005
    ....
  6. ncbi request reprint Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
    Rekha Seshadri
    Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Science 307:105-8. 2005
    ..Genome analysis provides insights into the organism's complex nutrient requirements and suggests that an ancestor was a nitrogen-fixing autotroph...
  7. pmc Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
    Jonathan A Eisen
    The Institute for Genomic Research, Rockville, Maryland, United States of America
    PLoS Biol 4:e286. 2006
    ..thermophila an ideal model for functional genomic studies to address biological, biomedical, and biotechnological questions of fundamental importance...
  8. pmc Characterization of bacterial communities associated with deep-sea corals on Gulf of Alaska seamounts
    Kevin Penn
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Appl Environ Microbiol 72:1680-3. 2006
    ..More sampling is needed to understand the basis and significance of this variation...
  9. pmc Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
    Robert S Coyne
    J Craig Venter Institute formerly The Institute for Genomic Research, 9704 Medical Center Dr, Rockville, MD, USA
    BMC Genomics 9:562. 2008
    ....
  10. ncbi request reprint Environmental genome shotgun sequencing of the Sargasso Sea
    J Craig Venter
    Institute for Biological Energy Alternatives, 1901 Research Boulevard, Rockville, MD 20850, USA
    Science 304:66-74. 2004
    ..2 million previously unknown genes represented in these samples, including more than 782 new rhodopsin-like photoreceptors. Variation in species present and stoichiometry suggests substantial oceanic microbial diversity...
  11. pmc Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath)
    Naomi Ward
    The Institute for Genomic Research, Rockville, Maryland, USA
    PLoS Biol 2:e303. 2004
    ..We have gained evidence for greater metabolic flexibility than was previously known, and for genetic components that may have biotechnological potential...
  12. pmc Comparative genomics of emerging human ehrlichiosis agents
    Julie C Dunning Hotopp
    The Institute for Genomic Research, Rockville, Maryland, USA
    PLoS Genet 2:e21. 2006
    ..These discoveries provide significant insights into the biology of these obligate intracellular pathogens...
  13. ncbi request reprint Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales
    Jonathan H Badger
    The Institute for Genomic Research, Rockville, MD 20850, USA
    Int J Syst Evol Microbiol 55:1021-6. 2005
    ..The possible reasons why the 16S rRNA gene sequence gives conflicting results in this case are also discussed...
  14. ncbi request reprint The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
    John F Heidelberg
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
    Nat Biotechnol 22:554-9. 2004
    ....
  15. ncbi request reprint Phylogenomics: intersection of evolution and genomics
    Jonathan A Eisen
    Institute for Genomic Research, Rockville, MD 20850, USA
    Science 300:1706-7. 2003
    ..Much has been gained from genomic and evolutionary studies of species. Combining the perspectives of these different approaches suggests that an integrated phylogenomic approach will be beneficial...
  16. pmc Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83
    Karen E Nelson
    The Institute for Genomic Research, Rockville, Maryland 20850, USA
    J Bacteriol 185:5591-601. 2003
    ..gingivalis can metabolize a range of amino acids and generate a number of metabolic end products that are toxic to the human host or human gingival tissue and contribute to the development of periodontal disease...
  17. ncbi request reprint The age of the Arabidopsis thaliana genome duplication
    Maria D Ermolaeva
    The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
    Plant Mol Biol 51:859-66. 2003
    ..In each case, our estimate places the age of the genome duplication as significantly younger than previously reported...