- Genomic characterization of Campylobacter jejuni strain M1Carsten Friis
Department of Systems Biology, The Technical University of Denmark, Lyngby, Denmark
PLoS ONE 5:e12253. 2010..Trees based on 16S rRNA sequences and on the total gene families in each genome are presented. The findings are discussed in the background of the proven virulence potential of M1...
- An environmental signature for 323 microbial genomes based on codon adaptation indicesHanni Willenbrock
Center for Biological Sequence Analysis, BioCentrum DTU, The Technical University of Denmark, DK 2800 Lyngby, Denmark
Genome Biol 7:R114. 2006..Here, we evaluate and compare two very different methods for estimating CAI values, one corresponding to translational codon usage bias and the second obtained mathematically by searching for the most dominant codon bias...
- Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomesRolf S Kaas
DTU Food, The Technical University of Denmark, Kgs Lyngby, Denmark
BMC Genomics 13:577. 2012..This knowledge will be useful for creating better phylogenies, for determination of molecular clocks and for improved typing techniques...