Ping An He

Summary

Affiliation: Zhejiang Sci-Tech University
Country: China

Publications

  1. pmc Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position
    Qi Dai
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou, 310018, China
    BMC Bioinformatics 14:152. 2013
  2. doi request reprint A 3D graphical representation of protein sequences based on the Gray code
    Ping An He
    College of Science, Zhejiang Sci Tech University, Hangzhou 310018, PR China
    J Theor Biol 304:81-7. 2012
  3. doi request reprint The graphical representation of protein sequences based on the physicochemical properties and its applications
    Ping An He
    Department of Mathematics, College of Science, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    J Comput Chem 31:2136-42. 2010
  4. doi request reprint A new graphical representation of similarity/dissimilarity studies of protein sequences
    P He
    College of Science, Zhejiang Sci Tech University, Hangzhou, China
    SAR QSAR Environ Res 21:571-80. 2010
  5. doi request reprint Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation
    Yu Hua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    J Comput Chem 31:1045-52. 2010
  6. ncbi request reprint Expression of open reading frames in silkworm pupal cDNA library
    Yao Zhou Zhang
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, China
    Appl Biochem Biotechnol 136:327-43. 2007
  7. doi request reprint Analysis of similarity/dissimilarity of protein sequences
    Yu Hua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    Proteins 73:864-71. 2008
  8. doi request reprint Analysis of similarity/dissimilarity of DNA sequences based on a class of 2D graphical representation
    Yu Hua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    J Comput Chem 29:1632-9. 2008
  9. doi request reprint A multiple information fusion method for predicting subcellular locations of two different types of bacterial protein simultaneously
    Jing Chen
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, China
    Biosystems 139:37-45. 2016
  10. ncbi request reprint Oligonucleotide profiling for discriminating bacteria in bacterial communities
    Ping An He
    College of Science, Zhejiang Sci Tech University, Hangzhou, PR China
    Comb Chem High Throughput Screen 10:247-55. 2007

Detail Information

Publications15

  1. pmc Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position
    Qi Dai
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou, 310018, China
    BMC Bioinformatics 14:152. 2013
    ..It is necessary to extract some appropriate position-based features of the secondary structural elements for prediction task...
  2. doi request reprint A 3D graphical representation of protein sequences based on the Gray code
    Ping An He
    College of Science, Zhejiang Sci Tech University, Hangzhou 310018, PR China
    J Theor Biol 304:81-7. 2012
    ..With the correlation and significance analysis, the comparisons of both our results and results of other graphical representation with the ClustalW's results can show the utility of our approach...
  3. doi request reprint The graphical representation of protein sequences based on the physicochemical properties and its applications
    Ping An He
    Department of Mathematics, College of Science, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    J Comput Chem 31:2136-42. 2010
    ..And, the examination of the similarity among sequences of the ND5 proteins of nine species shows the utility of our approach...
  4. doi request reprint A new graphical representation of similarity/dissimilarity studies of protein sequences
    P He
    College of Science, Zhejiang Sci Tech University, Hangzhou, China
    SAR QSAR Environ Res 21:571-80. 2010
    ..A numerical characterisation has been developed as a descriptor to compare protein sequences. Finally, an example is given in which the dehydrogenase subunit 5 (ND5) protein sequences of nine species are compared...
  5. doi request reprint Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation
    Yu Hua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    J Comput Chem 31:1045-52. 2010
    ..The results demonstrate the approach is convenient, fast, and efficient...
  6. ncbi request reprint Expression of open reading frames in silkworm pupal cDNA library
    Yao Zhou Zhang
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, China
    Appl Biochem Biotechnol 136:327-43. 2007
    ..Finally, the composition of nucleotides in promoter region for all ESTs was surveyed. The results imply that the TTTTA box may possess some functions in regulating transcription and expression of some genes...
  7. doi request reprint Analysis of similarity/dissimilarity of protein sequences
    Yu Hua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    Proteins 73:864-71. 2008
    ..Then, we introduce and compare two numerical characterizations of protein graphs as descriptors to analyze the nine ND5 proteins. The approach is simple, convenient, and fast...
  8. doi request reprint Analysis of similarity/dissimilarity of DNA sequences based on a class of 2D graphical representation
    Yu Hua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China
    J Comput Chem 29:1632-9. 2008
    ....
  9. doi request reprint A multiple information fusion method for predicting subcellular locations of two different types of bacterial protein simultaneously
    Jing Chen
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, China
    Biosystems 139:37-45. 2016
    ..32% and 93.06% for Gpos and Gneg. From both the rationality of testing procedure and the success rates of test results, the current method can improve the prediction quality of protein subcellular localization. ..
  10. ncbi request reprint Oligonucleotide profiling for discriminating bacteria in bacterial communities
    Ping An He
    College of Science, Zhejiang Sci Tech University, Hangzhou, PR China
    Comb Chem High Throughput Screen 10:247-55. 2007
    ..A new method to discriminate the origins of orphan DNA sequences was proposed, and the origins of 17 uncultured bacterium sequences from a bacterial community in the human gut were postulated and discussed...
  11. pmc Phylogenetic analysis of H7N9 avian influenza virus based on a novel mathematical descriptor
    Yusheng Bai
    School of Science, Zhejiang Sci Tech University, Hangzhou 310018, China
    Biomed Res Int 2014:519787. 2014
    ..Furthermore, two samples collected from environment in Nanjing and Zhejiang and one sample collected from chicken are the sources of H7N9 influenza virus that infected human in China. ..
  12. doi request reprint A novel descriptor of protein sequences and its application
    Yuhua Yao
    College of Life Sciences, Zhejiang Sci Tech University, Hangzhou 310018, People s Republic of China Electronic address
    J Theor Biol 347:109-17. 2014
    ..Finally, we take the nine ND5 (NADH dehydrogenase subunit 5) proteins for example and illustrate the effectiveness of our approach. ..
  13. pmc Novel numerical characterization of protein sequences based on individual amino acid and its application
    Yan Ping Zhang
    Department of Mathematics, School of Science, Hebei University of Engineering, Handan 056038, China
    Biomed Res Int 2015:909567. 2015
    ..The results show that the method is simple and effective. ..
  14. pmc Complete sequence and organization of Antheraea pernyi nucleopolyhedrovirus, a dr-rich baculovirus
    Zuo Ming Nie
    Institute of Biochemistry, Zhejiang Sci Tech University, Hangzhou, PR China
    BMC Genomics 8:248. 2007
    ..However, there is no report of the Antheraea pernyi nucleopolyhedrovirus (AnpeNPV) genome...
  15. pmc Identification and characteristics of microRNAs from Bombyx mori
    Ping An He
    Institute of Biochemistry, Zhejiang Sci Tech University, Hangzhou 310018, PR China
    BMC Genomics 9:248. 2008
    ..Of the 355 Arthropod miRNAs that have been identified, only 21 are B. mori miRNAs that were predicted computationally; of these, only let-7 has been confirmed by Northern blotting...