Yang Cao

Summary

Affiliation: South China Agricultural University
Country: China

Publications

  1. pmc MET is required for the maximal action of 20-hydroxyecdysone during Bombyx metamorphosis
    Enen Guo
    Key Laboratory of Insect Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    PLoS ONE 7:e53256. 2012
  2. pmc Functional divergence among silkworm antimicrobial peptide paralogs by the activities of recombinant proteins and the induced expression profiles
    Wanying Yang
    Laboratory of Insect Molecular Biology and Biotechnology, Guangdong Provincial Key Laboratory of Agro animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou, China
    PLoS ONE 6:e18109. 2011
  3. pmc Systematic cloning and analysis of autophagy-related genes from the silkworm Bombyx mori
    Xuan Zhang
    Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei Anhui 230027, PR China
    BMC Mol Biol 10:50. 2009
  4. pmc Genome-wide regulation of innate immunity by juvenile hormone and 20-hydroxyecdysone in the Bombyx fat body
    Ling Tian
    Key Laboratory of Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
    BMC Genomics 11:549. 2010
  5. doi request reprint Developmental regulation of glycolysis by 20-hydroxyecdysone and juvenile hormone in fat body tissues of the silkworm, Bombyx mori
    Ling Tian
    Key Laboratory of Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    J Mol Cell Biol 2:255-63. 2010
  6. pmc Gloverins of the silkworm Bombyx mori: structural and binding properties and activities
    Hui Yu Yi
    Laboratory of Insect Molecular Biology and Biotechnology, Guangdong Provincial Key Laboratory of Agro animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou 510642, China
    Insect Biochem Mol Biol 43:612-25. 2013
  7. doi request reprint RASP: rapid modeling of protein side chain conformations
    Zhichao Miao
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
    Bioinformatics 27:3117-22. 2011
  8. pmc NCACO-score: an effective main-chain dependent scoring function for structure modeling
    Liqing Tian
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    BMC Bioinformatics 12:208. 2011
  9. doi request reprint Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation
    Yang Cao
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    Bioinformatics 27:785-90. 2011
  10. pmc Molecular and functional characterization of a c-type lysozyme from the Asian corn borer, Ostrinia furnacalis
    Wen Xian Wang
    Department of Entomology, College of Natural Resource and Environment, South China Agricultural University, Guangzhou, 510642, PR China
    J Insect Sci 9:17. 2009

Collaborators

Detail Information

Publications18

  1. pmc MET is required for the maximal action of 20-hydroxyecdysone during Bombyx metamorphosis
    Enen Guo
    Key Laboratory of Insect Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    PLoS ONE 7:e53256. 2012
    ..In conclusion, the 20E induction of MET is required for the maximal action of 20E during Bombyx metamorphosis...
  2. pmc Functional divergence among silkworm antimicrobial peptide paralogs by the activities of recombinant proteins and the induced expression profiles
    Wanying Yang
    Laboratory of Insect Molecular Biology and Biotechnology, Guangdong Provincial Key Laboratory of Agro animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou, China
    PLoS ONE 6:e18109. 2011
    ....
  3. pmc Systematic cloning and analysis of autophagy-related genes from the silkworm Bombyx mori
    Xuan Zhang
    Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei Anhui 230027, PR China
    BMC Mol Biol 10:50. 2009
    ..However, this pathway in the insect model organism, the silkworm Bombyx mori, remains poorly investigated...
  4. pmc Genome-wide regulation of innate immunity by juvenile hormone and 20-hydroxyecdysone in the Bombyx fat body
    Ling Tian
    Key Laboratory of Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
    BMC Genomics 11:549. 2010
    ..Fat body produces humoral response molecules and hence is considered as the major organ involved in innate immunity...
  5. doi request reprint Developmental regulation of glycolysis by 20-hydroxyecdysone and juvenile hormone in fat body tissues of the silkworm, Bombyx mori
    Ling Tian
    Key Laboratory of Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    J Mol Cell Biol 2:255-63. 2010
    ..Taken together, we conclude that 20E acts as a general blocker for glycolysis in the Bombyx fat body during molting and pupation, whereas the physiological role of JH is contrast with 20E during molting...
  6. pmc Gloverins of the silkworm Bombyx mori: structural and binding properties and activities
    Hui Yu Yi
    Laboratory of Insect Molecular Biology and Biotechnology, Guangdong Provincial Key Laboratory of Agro animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou 510642, China
    Insect Biochem Mol Biol 43:612-25. 2013
    ..0) were active against E. coli mutant strains containing rough LPS but inactive against E. coli with smooth LPS. Our results suggest that binding to rough LPS is the prerequisite for the activity of BmGlvs against E. coli...
  7. doi request reprint RASP: rapid modeling of protein side chain conformations
    Zhichao Miao
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
    Bioinformatics 27:3117-22. 2011
    ..However, these recent efforts to enhance the quality of predicted side chains have been accompanied by a significant increase of computational cost...
  8. pmc NCACO-score: an effective main-chain dependent scoring function for structure modeling
    Liqing Tian
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    BMC Bioinformatics 12:208. 2011
    ..Despite these efforts, development of an effective scoring function that can achieve both good accuracy and fast speed still presents a grand challenge...
  9. doi request reprint Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation
    Yang Cao
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    Bioinformatics 27:785-90. 2011
    ..However, in the tightly packed environments of protein interiors, these methods will inherently lead to atomic clashes and hinder the prediction accuracy...
  10. pmc Molecular and functional characterization of a c-type lysozyme from the Asian corn borer, Ostrinia furnacalis
    Wen Xian Wang
    Department of Entomology, College of Natural Resource and Environment, South China Agricultural University, Guangzhou, 510642, PR China
    J Insect Sci 9:17. 2009
    ....
  11. ncbi request reprint Drosophila myosin-XX functions as an actin-binding protein to facilitate the interaction between Zyx102 and actin
    Yang Cao
    Group of Cell Motility and Muscle Contraction, National Laboratory of Integrated Management of Insect Pests and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
    Biochemistry 53:350-60. 2014
    ..These results suggest that DmMyo20 functions as a scaffold protein, but not as a molecular motor, in a signaling pathway controlling cell differentiation. ..
  12. ncbi request reprint Functional divergence of six isoforms of antifungal peptide Drosomycin in Drosophila melanogaster
    Wan Ying Yang
    Department of Sericulture Science, College of Animal Science, South China Agricultural University, 510642, Guangzhou, PR China
    Gene 379:26-32. 2006
    ..In addition, two inserted residues (RV) in Drs-lI may affect the dimensional structure and resulted in a functional change. These results may explain the evolution of the Drosomycin multigene family and its functional divergence...
  13. pmc Rapid estimation of binding activity of influenza virus hemagglutinin to human and avian receptors
    Yang Cao
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    PLoS ONE 6:e18664. 2011
    ..The new computational method could provide an urgently needed tool for rapid and large-scale analysis of HA receptor specificities for global influenza surveillance...
  14. pmc Incorporation of local structural preference potential improves fold recognition
    Yun Hu
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    PLoS ONE 6:e17215. 2011
    ....
  15. pmc Calmodulin bound to the first IQ motif is responsible for calcium-dependent regulation of myosin 5a
    Zekuan Lu
    Group of Cell Motility and Muscle Contraction, National Laboratory of Integrated Management of Insect Pests and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
    J Biol Chem 287:16530-40. 2012
    ..We propose that Ca(2+) induces a conformational change of the C-lobe of CaM in IQ1 and prevents interaction between the head and the tail, thus activating motor function...
  16. doi request reprint Modeling of protein side-chain conformations with RASP
    Zhichao Miao
    Key Lab of Protein and Peptide Pharmaceuticals, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
    Methods Mol Biol 1137:43-53. 2014
    ..Then details on how to use RASP programs to predict protein side-chain conformations are elaborated. Finally, it describes case studies for structure refinement in homology modeling and residue substitution. ..
  17. pmc A U1-U2 snRNP interaction network during intron definition
    Wei Shao
    Key Laboratory of Insect Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    Mol Cell Biol 32:470-8. 2012
    ....
  18. pmc Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution
    Xiangjun Du
    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
    Genome Res 18:178-87. 2008
    ..Therefore, our study demonstrates that nucleotide co-occurrence networks represent a powerful method for tracking influenza A virus evolution and that cooperative genomic interaction is a major force underlying influenza virus evolution...