Sanwen Huang

Summary

Affiliation: Chinese Academy of Agricultural Sciences
Country: China

Publications

  1. doi request reprint The genome of the cucumber, Cucumis sativus L
    Sanwen Huang
    Key Laboratory of Horticultural Crops Genetic Improvement of Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Nat Genet 41:1275-81. 2009
  2. pmc Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
    Pablo F Cavagnaro
    Horticulture Department, University of Wisconsin, Madison, WI 53706, USA
    BMC Genomics 11:569. 2010
  3. pmc Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    Shaogui Guo
    1National Engineering Research Center for Vegetables, Beijing 100097, China
    BMC Genomics 11:384. 2010
  4. doi request reprint Fine mapping of the Ph-3 gene conferring resistance to late blight (Phytophthora infestans) in tomato
    Chunzhi Zhang
    The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Zhongguancunnandajie 12, Beijing, 100081, People s Republic of China
    Theor Appl Genet 126:2643-53. 2013
  5. doi request reprint Localization of a new gene for bitterness in cucumber
    Shengping Zhang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China
    J Hered 104:134-9. 2013
  6. doi request reprint Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster
    Houxiang Kang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Theor Appl Genet 122:795-803. 2011
  7. pmc Genome-wide analysis of WRKY gene family in Cucumis sativus
    Jian Ling
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081 China
    BMC Genomics 12:471. 2011
  8. pmc Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber
    Zhonghua Zhang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China
    Plant Cell 27:1595-604. 2015
  9. doi request reprint A major quantitative trait locus conferring subgynoecy in cucumber
    Fengjiao Bu
    Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Sino Dutch Joint Lab of Horticultural Genomics, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
    Theor Appl Genet 129:97-104. 2016
  10. pmc Genetic diversity and population structure of cucumber (Cucumis sativus L.)
    Jing Lv
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 7:e46919. 2012

Collaborators

Detail Information

Publications20

  1. doi request reprint The genome of the cucumber, Cucumis sativus L
    Sanwen Huang
    Key Laboratory of Horticultural Crops Genetic Improvement of Ministry of Agriculture, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Nat Genet 41:1275-81. 2009
    ..We also identify 686 gene clusters related to phloem function. The cucumber genome provides a valuable resource for developing elite cultivars and for studying the evolution and function of the plant vascular system...
  2. pmc Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
    Pablo F Cavagnaro
    Horticulture Department, University of Wisconsin, Madison, WI 53706, USA
    BMC Genomics 11:569. 2010
    ..Similar analyses were performed in genomic and EST data from seven other plant species, and the results were compared with those of cucumber...
  3. pmc Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    Shaogui Guo
    1National Engineering Research Center for Vegetables, Beijing 100097, China
    BMC Genomics 11:384. 2010
    ....
  4. doi request reprint Fine mapping of the Ph-3 gene conferring resistance to late blight (Phytophthora infestans) in tomato
    Chunzhi Zhang
    The Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Zhongguancunnandajie 12, Beijing, 100081, People s Republic of China
    Theor Appl Genet 126:2643-53. 2013
    ..Furthermore, this RGA family was also found in the potato genome, but the number of the RGAs was higher than in tomato. ..
  5. doi request reprint Localization of a new gene for bitterness in cucumber
    Shengping Zhang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 10081, China
    J Hered 104:134-9. 2013
    ..94 Kb with 160 predicted genes and 1528.23 Kb with 198 predicted genes, respectively. Among 160 predicted genes for bi-1, there is a terpene synthase gene named Csa008595, which was speculated as the candidate gene of bi-1...
  6. doi request reprint Fine genetic mapping localizes cucumber scab resistance gene Ccu into an R gene cluster
    Houxiang Kang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
    Theor Appl Genet 122:795-803. 2011
    ..Comparative DNA analysis of this cucumber Ccu gene region with a melon (C. melo) bacterial artificial chromosome (BAC) clone revealed a high degree of micro-synteny and conservation of the RGA tandem repeats in this region...
  7. pmc Genome-wide analysis of WRKY gene family in Cucumis sativus
    Jian Ling
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing, 100081 China
    BMC Genomics 12:471. 2011
    ....
  8. pmc Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber
    Zhonghua Zhang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China
    Plant Cell 27:1595-604. 2015
    ..The SV set provides a snapshot of structural variations in plants and will serve as an important resource for exploring genes underlying key traits and for facilitating practical breeding in cucumber. ..
  9. doi request reprint A major quantitative trait locus conferring subgynoecy in cucumber
    Fengjiao Bu
    Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Sino Dutch Joint Lab of Horticultural Genomics, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
    Theor Appl Genet 129:97-104. 2016
    ..1 was further delimited to a genomic region of 799 kb. The genetic basis of subgynoecy revealed here shall shed light on the development of elite cultivars with high yield potential...
  10. pmc Genetic diversity and population structure of cucumber (Cucumis sativus L.)
    Jing Lv
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 7:e46919. 2012
    ..Insight into the genetic structure of cucumber will help developing appropriate conservation strategies and provides a basis for population-level genome sequencing in cucumber...
  11. doi request reprint The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
    Shaogui Guo
    National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops North China, Beijing, China
    Nat Genet 45:51-8. 2013
    ....
  12. doi request reprint An ACCUMULATION AND REPLICATION OF CHLOROPLASTS 5 gene mutation confers light green peel in cucumber
    Qian Zhou
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino Dutch Joint Laboratory of Horticultural Genomics, Beijing, 100081, China
    J Integr Plant Biol 57:936-42. 2015
    ..This study provides a new allele for cucumber breeding for light green fruits and additional resource for the study of chloroplast development...
  13. doi request reprint A Rare SNP Identified a TCP Transcription Factor Essential for Tendril Development in Cucumber
    Shenhao Wang
    Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Sino Dutch Joint Lab of Horticultural Genomics, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518124, China
    Mol Plant 8:1795-808. 2015
    ..Analyses of transcriptomes from near-isogenic lines identified downstream genes required for the tendril's capability to sense and climb a support. This study provides an example to explore rare functional variants in plant genomes. ..
  14. pmc An integrated genetic and cytogenetic map of the cucumber genome
    Yi Ren
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Sino Dutch Joint Lab of Horticultural Genomics, Opening Lab of Genetic Improvement of Agricultural Crops of Ministry of Agriculture, Beijing, China
    PLoS ONE 4:e5795. 2009
    ..This map will facilitate whole genome sequencing, positional cloning, and molecular breeding in cucumber, and enable the integration of knowledge of gene and trait in cucurbits...
  15. doi request reprint QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber
    Hongfeng Lu
    Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of Ministry of Agriculture, Sino Dutch Joint Lab of Horticultural Genomics, Institute of Vegetables and Flowers, CAAS, Beijing, 100081, China
    Theor Appl Genet 127:1491-9. 2014
    ..Data presented here provide support for Csa1G651710 as a possible candidate gene for early flowering in the cucumber line Muromskij...
  16. doi request reprint The genome of the mesopolyploid crop species Brassica rapa
    Xiaowu Wang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences IVF, CAAS, Beijing, China
    Nat Genet 43:1035-9. 2011
    ..The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops...
  17. pmc RNA-Seq improves annotation of protein-coding genes in the cucumber genome
    Zhen Li
    College of Life Sciences, Beijing Normal University, 19 Xinjiekouwai Street, Beijing, 100875, China
    BMC Genomics 12:540. 2011
    ..We applied the new pipeline to the reassembled cucumber genome and included a comparison between our predicted protein-coding gene sets and a published set...
  18. doi request reprint Genomic analyses provide insights into the history of tomato breeding
    Tao Lin
    1 Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino Dutch Joint Laboratory of Horticultural Genomics, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China 2 Agricultural Genome Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
    Nat Genet 46:1220-6. 2014
    ..This study outlines the accomplishments as well as the costs of historical selection and provides molecular insights toward further improvement. ..
  19. doi request reprint Plant science. Biosynthesis, regulation, and domestication of bitterness in cucumber
    Yi Shang
    Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino Dutch Joint Laboratory of Horticultural Genomics, Beijing 100081, China Agricultural Genomic Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518124, China
    Science 346:1084-8. 2014
    ..Traces in genomic signatures indicated that selection imposed on Bt during domestication led to derivation of nonbitter cucurbits from their bitter ancestors. ..
  20. pmc Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus
    Kui Lin
    Laboratory of Computational Molecular Biology, College of Life Sciences, Beijing Normal University, Beijing, China
    PLoS Genet 10:e1004078. 2014
    ..This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya. ..