Marinko V Sarunic

Summary

Affiliation: Simon Fraser University
Country: Canada

Publications

  1. doi request reprint Longitudinal study of retinal degeneration in a rat using spectral domain optical coherence tomography
    Marinko V Sarunic
    School of Engineering Science, Simon Fraser University, BC, Canada
    Opt Express 18:23435-41. 2010
  2. pmc Lens-based wavefront sensorless adaptive optics swept source OCT
    Yifan Jian
    School of Engineering Science, Simon Fraser University, Burnaby, BC, Canada
    Sci Rep 6:27620. 2016
  3. pmc Functional Assessment of Cardiac Responses of Adult Zebrafish (Danio rerio) to Acute and Chronic Temperature Change Using High-Resolution Echocardiography
    Ling Lee
    Molecular Cardiac Physiology Group, Department of Biomedical Physiology and Kinesiology, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
    PLoS ONE 11:e0145163. 2016
  4. pmc Aortic and Cardiac Structure and Function Using High-Resolution Echocardiography and Optical Coherence Tomography in a Mouse Model of Marfan Syndrome
    Ling Lee
    Child and Family Research Institute, Department of Cardiovascular Sciences, Vancouver, BC, Canada
    PLoS ONE 11:e0164778. 2016
  5. pmc Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging
    Michelle Cua
    School of Engineering Science, Simon Fraser University, Burnaby, BC V5A 1S6 Canada
    Sci Rep 6:32223. 2016
  6. doi request reprint Retinal angiography with real-time speckle variance optical coherence tomography
    Jing Xu
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, Canada
    Br J Ophthalmol 99:1315-9. 2015
  7. doi request reprint Comparative analysis of repeatability of manual and automated choroidal thickness measurements in nonneovascular age-related macular degeneration
    Sieun Lee
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, Canada
    Invest Ophthalmol Vis Sci 54:2864-71. 2013
  8. doi request reprint Segmentation of intra-retinal layers from optical coherence tomography images using an active contour approach
    Azadeh Yazdanpanah
    School of Engineering Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada
    IEEE Trans Med Imaging 30:484-96. 2011
  9. doi request reprint Rapid volumetric OCT image acquisition using compressive sampling
    Evgeniy Lebed
    School of Engineering Science, Simon Fraser University, Canada
    Opt Express 18:21003-12. 2010
  10. doi request reprint Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework
    Sieun Lee
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada
    Med Image Anal 35:570-581. 2017

Collaborators

  • Glen F Tibbits
  • Evgeniy Lebed
  • Robert J Zawadzki
  • Farzin Forooghian
  • Eli Gibson
  • Azadeh Yazdanpanah
  • Dao Yi Yu
  • Andy Bo Wu
  • Jian Li
  • Ghassan Hamarneh
  • Michelle Cua
  • Yifan Jian
  • Sieun Lee
  • Mirza Faisal Beg
  • Ling Lee
  • Eric Lin
  • Mei Young
  • Sujin Lee
  • Xiaoye Sheng
  • Paul J Mackenzie
  • Myeong Jin Ju
  • Stefano Bonora
  • Pablo F Barcelona
  • Jing Xu
  • Weiguang Ding
  • Mirza F Beg
  • Kevin S K Wong
  • Alain Trouve
  • Karteek Popuri
  • Nicolas Charon
  • Benjamin Charlier
  • George G S Sandor
  • Daniel J Wahl
  • Mitra Esfandiarei
  • Jason Z Cui
  • Yuan Zhao
  • Morgan Heisler
  • Nicolas Cuenca
  • Nicholas Sitaras
  • Alba Galan
  • H Uri Saragovi
  • Sean Jmaeff
  • Dongkai Miao
  • Gema Esquiva
  • CORNELIUS VAN BREEMEN
  • Kaveh Rayani
  • Christine E Genge
  • Winsey Audrey Chui
  • Przemyslaw Sapieha
  • Michael Haoying Xu
  • Calvin Craig
  • Sherry Han
  • Paul Mackenzie
  • Andrew Merkur
  • Andrew Kirker
  • Marcel Lamothe
  • David Albiani
  • Zaid Mammo
  • Chandrakumar Balaratnasingam
  • Leif Hove-Madsen
  • Sherry X Han
  • Mahmoud Rateb
  • Amanda Ribeiro
  • Ashley Ko
  • Kaivon Pakzad-Vaezi
  • Kevin Wong
  • Nader Fallah
  • Andrew B Merkur
  • David A Albiani
  • Andrew W Kirker

Detail Information

Publications23

  1. doi request reprint Longitudinal study of retinal degeneration in a rat using spectral domain optical coherence tomography
    Marinko V Sarunic
    School of Engineering Science, Simon Fraser University, BC, Canada
    Opt Express 18:23435-41. 2010
    ..The computational tools complement OCT retinal volumetric acquisition, resulting in a powerful tool for vision scientists working with rodents...
  2. pmc Lens-based wavefront sensorless adaptive optics swept source OCT
    Yifan Jian
    School of Engineering Science, Simon Fraser University, Burnaby, BC, Canada
    Sci Rep 6:27620. 2016
    ..In order to demonstrate the system functionality and clinical utility, we present images of the photoreceptor cone mosaic and other retinal layers acquired in vivo from research subjects. ..
  3. pmc Functional Assessment of Cardiac Responses of Adult Zebrafish (Danio rerio) to Acute and Chronic Temperature Change Using High-Resolution Echocardiography
    Ling Lee
    Molecular Cardiac Physiology Group, Department of Biomedical Physiology and Kinesiology, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
    PLoS ONE 11:e0145163. 2016
    ..The decreased early peak (E) velocity and early peak velocity / atrial peak velocity (E/A) ratio in the CA group are likely associated with increased reliance on atrial contraction for ventricular filling. ..
  4. pmc Aortic and Cardiac Structure and Function Using High-Resolution Echocardiography and Optical Coherence Tomography in a Mouse Model of Marfan Syndrome
    Ling Lee
    Child and Family Research Institute, Department of Cardiovascular Sciences, Vancouver, BC, Canada
    PLoS ONE 11:e0164778. 2016
    ....
  5. pmc Coherence-Gated Sensorless Adaptive Optics Multiphoton Retinal Imaging
    Michelle Cua
    School of Engineering Science, Simon Fraser University, Burnaby, BC V5A 1S6 Canada
    Sci Rep 6:32223. 2016
    ..This configuration has significant potential for reducing the laser power required for adaptive optics multiphoton imaging, and for facilitating integration with existing systems. ..
  6. doi request reprint Retinal angiography with real-time speckle variance optical coherence tomography
    Jing Xu
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, Canada
    Br J Ophthalmol 99:1315-9. 2015
    ..Therefore svOCT may have clinical and research applications for the management of retinal microvascular diseases, which are a major cause of visual morbidity worldwide. ..
  7. doi request reprint Comparative analysis of repeatability of manual and automated choroidal thickness measurements in nonneovascular age-related macular degeneration
    Sieun Lee
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, Canada
    Invest Ophthalmol Vis Sci 54:2864-71. 2013
    ....
  8. doi request reprint Segmentation of intra-retinal layers from optical coherence tomography images using an active contour approach
    Azadeh Yazdanpanah
    School of Engineering Science, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada
    IEEE Trans Med Imaging 30:484-96. 2011
    ..84 over all segmented retinal layers, and of 0.94 for the combined nerve fiber layer, ganglion cell layer, and inner plexiform layer which are the critical layers for glaucomatous degeneration...
  9. doi request reprint Rapid volumetric OCT image acquisition using compressive sampling
    Evgeniy Lebed
    School of Engineering Science, Simon Fraser University, Canada
    Opt Express 18:21003-12. 2010
    ..The potential outcome of this work is a significant reduction in OCT image acquisition time, with possible extensions to speeding up acquisition in other imaging modalities such as ultrasound and MRI...
  10. doi request reprint Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework
    Sieun Lee
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada
    Med Image Anal 35:570-581. 2017
    ..Additionally, a regularized linear discriminant analysis classifier was used to automatically classify glaucoma, glaucoma-suspect, and control cases based on RNFL fshape metrics...
  11. doi request reprint Retinal optical coherence tomography at 1 μm with dynamic focus control and axial motion tracking
    Michelle Cua
    Simon Fraser University, Department of Engineering Science, 8888 University Drive, Burnaby, British Columbia V5A1S6, Canada
    J Biomed Opt 21:26007. 2016
    ..Using this system, we show high-resolution images of the retina and optic nerve head, from which we extracted clinically relevant parameters such as the nerve fiber layer thickness and lamina cribrosa microarchitecture...
  12. pmc Construction and use of a zebrafish heart voltage and calcium optical mapping system, with integrated electrocardiogram and programmable electrical stimulation
    Eric Lin
    Molecular Cardiac Physiology Group, Biomedical Physiology and Kinesiology, Simon Fraser University, Burnaby, Canada
    Am J Physiol Regul Integr Comp Physiol 308:R755-68. 2015
    ..Laboratory procedures necessary for zebrafish heart isolation, cannulation, and loading are also presented. ..
  13. doi request reprint Morphological phenotyping of mouse hearts using optical coherence tomography
    Michelle Cua
    Simon Fraser University, Faculty of Applied Science, School of Engineering Science, 8888 University Drive, Burnaby, BC V5A 1S6, Canada
    J Biomed Opt 19:116007. 2014
    ..Finally, we applied the entire acquisition and processing pipeline in a preliminary study comparing the cardiac morphology of wild-type mice and a transgenic mouse model of MFS...
  14. doi request reprint Comparison of the clinical disc margin seen in stereo disc photographs with neural canal opening seen in optical coherence tomography images
    Mei Young
    School of Engineering Science, Simon Fraser University Department of Ophthalmology and Visual Sciences, University of British Columbia, BC, Canada
    J Glaucoma 23:360-7. 2014
    ..To compare neural canal opening (NCO) with the clinical optic disc margin (DM) seen and to investigate the planarity of the NCO in normal human optic nerve heads (ONH)...
  15. doi request reprint Optic nerve head and peripapillary morphometrics in myopic glaucoma
    Sieun Lee
    School of Engineering Science, Simon Fraser University, Burnaby, British Columbia, Canada
    Invest Ophthalmol Vis Sci 55:4378-93. 2014
    ..To investigate morphological characteristics of optic nerve head and peripapillary region with myopia and glaucoma...
  16. doi request reprint Quantitative evaluation of transform domains for compressive sampling-based recovery of sparsely sampled volumetric OCT images
    Andy Bo Wu
    School of Engineering Science, Simon Fraser University, Burnaby, BC, Canada
    IEEE Trans Biomed Eng 60:470-8. 2013
    ..We observed that fast Fourier transformation and wavelet both are capable of reconstructing OCT image volumes for the orthogonal sparse sampling masks used in this report, but with different merits...
  17. doi request reprint Graphics processing unit accelerated optical coherence tomography processing at megahertz axial scan rate and high resolution video rate volumetric rendering
    Yifan Jian
    Simon Fraser University, School of Engineering Science, Burnaby, BC V5A 1S6, Canada
    J Biomed Opt 18:26002. 2013
    ....
  18. doi request reprint Rapid radial optical coherence tomography image acquisition
    Evgeniy Lebed
    School of Engineering Science, Simon Fraser University, 8888 University Drive, Burnaby, British Columbia V5A 1S6, Canada
    J Biomed Opt 18:036004. 2013
    ..The potential outcome of this work could lead to significant reductions in OCT volume acquisition time in clinical practice...
  19. doi request reprint Performance and scalability of Fourier domain optical coherence tomography acceleration using graphics processing units
    Jian Li
    School of Engineering Sciences, Simon Fraser University, V5A 1S6 Burnaby, BC, Canada
    Appl Opt 50:1832-8. 2011
    ..Finally, we discuss how the performance trends of GPU-based accelerators compare to the expected future requirements of FD-OCT data rates...
  20. doi request reprint p75NTR and Its Ligand ProNGF Activate Paracrine Mechanisms Etiological to the Vascular, Inflammatory, and Neurodegenerative Pathologies of Diabetic Retinopathy
    Pablo F Barcelona
    Lady Davis Institute Jewish General Hospital, Center for Translational Research, McGill University, Montreal, Quebec H3T 1E2, Canada, Department of Pharmacology and Therapeutics, McGill University, Montreal, Quebec H3G 1Y6, Canada
    J Neurosci 36:8826-41. 2016
    ..Thus, our study documents novel disease mechanisms and validates druggable targets for diabetic retinopathy...
  21. pmc Adaptive optics optical coherence tomography for in vivo mouse retinal imaging
    Yifan Jian
    Simon Fraser University, Engineering Science, Burnaby, British Columbia V5A 1S6, Canada
    J Biomed Opt 18:56007. 2013
    ..Performance of the adaptive optics (AO) system for correcting residual wavefront aberration in the mice eyes is presented. Results of AO FD-OCT images of mouse retina acquired in vivo with and without AO correction are shown as well...
  22. pmc Optical mapping of the electrical activity of isolated adult zebrafish hearts: acute effects of temperature
    Eric Lin
    Molecular Cardiac Physiology Group, Biomedical Physiology and Kinesiology, Simon Fraser University, Burnaby, Canada
    Am J Physiol Regul Integr Comp Physiol 306:R823-36. 2014
    ....
  23. doi request reprint Optic nerve head registration via hemispherical surface and volume registration
    Eli Gibson
    School of Engineering Science, Simon Fraser University, Burnaby, BC V5A1S6, Canada
    IEEE Trans Biomed Eng 57:2592-5. 2010
    ..An application of this coordinate system to construct an average ONH shape across an illustrative dataset is demonstrated, and the impact of template selection is assessed...