Daniel G Pinheiro

Summary

Country: Brazil

Publications

  1. pmc High-throughput sequencing of black pepper root transcriptome
    Sheila M C Gordo
    Genetics and Molecular Biology Laboratory, COASTAL STUDIES INSTITUTE, Bragança Campus, Universidade Federal do Para, PA, Brazil
    BMC Plant Biol 12:168. 2012
  2. pmc Computational framework to support integration of biomolecular and clinical data within a translational approach
    Newton Shydeo Brandão Miyoshi
    Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Languages of Ribeirão Preto, University of Sao Paulo, Sao Paulo, Brazil
    BMC Bioinformatics 14:180. 2013
  3. pmc A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling
    Daniel G Pinheiro
    Departamento de Genetica, Faculdade de Medicina de Ribeirao Preto, Universidade de Sao Paulo, Ribeirao Preto, SP, Brazil
    BMC Bioinformatics 10:170. 2009
  4. pmc Transcriptional profiling reveals intrinsic mRNA alterations in multipotent mesenchymal stromal cells isolated from bone marrow of newly-diagnosed type 1 diabetes patients
    Kalil A de Lima
    Center for Cell Based Research, Regional Blood Center of Ribeirão Preto, Ribeirao Preto Medical, University of Sao Paulo, Ribeirao Preto, Brazil
    Stem Cell Res Ther 7:92. 2016
  5. doi request reprint Bone marrow mesenchymal stromal cells isolated from multiple sclerosis patients have distinct gene expression profile and decreased suppressive function compared with healthy counterparts
    Gislane L V de Oliveira
    Center for Cell Based Research, Regional Blood Center of Ribeirão Preto, Ribeirao Preto Medical School, University of Sao Paulo USP, Ribeirao Preto, Sao Paulo, Brazil
    Cell Transplant 24:151-65. 2015
  6. ncbi request reprint Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences
    Elisa N Ferreira
    Laboratory of Molecular Biology and Genomics, Ludwig Institute for Cancer Research, Sao Paulo, SP, Brazil
    Genet Mol Res 3:493-511. 2004
  7. pmc Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries
    Nelson J F Silveira
    Instituto de Pesquisa e Desenvolvimento, Universidade do Vale do Paraiba, UNIVAP, Sao Jose dos Campos, SP, Brazil
    BMC Med Genomics 1:56. 2008
  8. doi request reprint Altered expression of degranulation-related genes in CD8+ T cells in human T lymphotropic virus type I infection
    Tathiane M Malta
    National Institute of Science and Technology in Stem Cell and Cell Therapy, Center for Cell Therapy and Regional Blood Center, Blood Center of Ribeirão Preto, Ribeirao Preto, Sao Paulo, Brazil
    AIDS Res Hum Retroviruses 29:826-36. 2013
  9. pmc The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome
    Francis M F Nunes
    Departamento de Genetica, Laboratório de Genética Molecular e Bioinformática, Faculdade de Medicina de Ribeirao Preto, Universidade de Sao Paulo, Av Bandeirantes 3900, 14040 900 Ribeirão Preto, SP, Brazil
    BMC Genomics 5:84. 2004

Collaborators

  • Dimas T Covas
  • Andrew J G Simpson
  • Silvia R Rogatto
  • Sueli M Oba-Shinjo
  • Elisa N Ferreira
  • Israel T Silva
  • Pedro A F Galante
  • Marcia M G Bitondi
  • Valeria Valente
  • Rafaela M Maia
  • Adriana M Nascimento
  • Gislane L V de Oliveira
  • Wilson A Silva
  • Kalil A de Lima
  • Kelen C R Malmegrim
  • Belinda P Simões
  • Wilson Araujo Silva
  • Rodrigo A Panepucci
  • Tathiane M Malta
  • Newton Shydeo Brandão Miyoshi
  • Sheila M C Gordo
  • Nelson J F Silveira
  • Francis M F Nunes
  • Maria C Oliveira
  • Juliana N U Yaochite
  • Júlia T C de Azevedo
  • Julio C Voltarelli
  • Carlos E B Couri
  • Eduardo A Donadi
  • Amanda M Colombini
  • Kalil W A de Lima
  • Maria C de Oliveira
  • Patrícia V B Palma
  • Doralina G Brum
  • Yuetsu Tanaka
  • Joaquim Cezar Felipe
  • Mariana T Pinto
  • Simone Kashima
  • Anemarie R D Santos
  • Osvaldo M Takayanagui
  • Simone M Rodrigues
  • Rommel T J Ramos
  • Artur Silva
  • Marli C Poltronieri
  • Sylvain Darnet
  • Edith C O Moreira
  • Horacio Schneider
  • Oriel F de Lemos
  • Iracilda Sampaio
  • Israel Tojal da Silva
  • Francisco G Nobrega
  • Patricia Severino
  • Eloiza H Tajara
  • Carlos A de B Pereira
  • Rodrigo V Rodrigues
  • Marcelo S Lauretto
  • Leonardo Varuzza
  • Ariane Machado-Lima
  • Alex F Carvalho
  • Foued S Espindola
  • Enilza M Espreafico
  • Maria F R Silva
  • Marco A Zago
  • Waleska K Martins
  • Marco A V Cunha
  • Maria C R Costa
  • Klaus Hartfelder
  • Maria L Paco-Larson
  • Ricardo G P Ramos
  • Nadia Monesi
  • Zila L P Simoes
  • Ademilson E E Soares
  • Pablo M V Peixoto
  • Emmanuel Dias-Neto
  • Daniela D Araujo
  • Luis F L Reis
  • Sandro J Souza
  • Josane F Sousa

Detail Information

Publications9

  1. pmc High-throughput sequencing of black pepper root transcriptome
    Sheila M C Gordo
    Genetics and Molecular Biology Laboratory, COASTAL STUDIES INSTITUTE, Bragança Campus, Universidade Federal do Para, PA, Brazil
    BMC Plant Biol 12:168. 2012
    ..Genetic and molecular data for this species, though, are limited. In this paper, RNA-Seq technology has been employed, for the first time, to describe the root transcriptome of black pepper...
  2. pmc Computational framework to support integration of biomolecular and clinical data within a translational approach
    Newton Shydeo Brandão Miyoshi
    Department of Computing and Mathematics, Faculty of Philosophy, Sciences and Languages of Ribeirão Preto, University of Sao Paulo, Sao Paulo, Brazil
    BMC Bioinformatics 14:180. 2013
    ....
  3. pmc A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling
    Daniel G Pinheiro
    Departamento de Genetica, Faculdade de Medicina de Ribeirao Preto, Universidade de Sao Paulo, Ribeirao Preto, SP, Brazil
    BMC Bioinformatics 10:170. 2009
    ..This is made through a series of evaluations based on a defined rule set. S3T allows the identification/selection of tags, considered more reliable for further gene expression analysis...
  4. pmc Transcriptional profiling reveals intrinsic mRNA alterations in multipotent mesenchymal stromal cells isolated from bone marrow of newly-diagnosed type 1 diabetes patients
    Kalil A de Lima
    Center for Cell Based Research, Regional Blood Center of Ribeirão Preto, Ribeirao Preto Medical, University of Sao Paulo, Ribeirao Preto, Brazil
    Stem Cell Res Ther 7:92. 2016
    ..Thus, studies that investigate biological characteristics of MSCs isolated from T1D patients are essential to guide future clinical applications...
  5. doi request reprint Bone marrow mesenchymal stromal cells isolated from multiple sclerosis patients have distinct gene expression profile and decreased suppressive function compared with healthy counterparts
    Gislane L V de Oliveira
    Center for Cell Based Research, Regional Blood Center of Ribeirão Preto, Ribeirao Preto Medical School, University of Sao Paulo USP, Ribeirao Preto, Sao Paulo, Brazil
    Cell Transplant 24:151-65. 2015
    ..We also demonstrated that treatment of MS patients with AHSCT does not reverse the transcriptional and functional alterations observed in patient MSCs. ..
  6. ncbi request reprint Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences
    Elisa N Ferreira
    Laboratory of Molecular Biology and Genomics, Ludwig Institute for Cancer Research, Sao Paulo, SP, Brazil
    Genet Mol Res 3:493-511. 2004
    ..In silico expression analysis suggests that some of these transcripts are expressed at low levels and in a restricted set of tissues...
  7. pmc Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries
    Nelson J F Silveira
    Instituto de Pesquisa e Desenvolvimento, Universidade do Vale do Paraiba, UNIVAP, Sao Jose dos Campos, SP, Brazil
    BMC Med Genomics 1:56. 2008
    ..Despite extensive research, no molecular markers are currently available for diagnostic or prognostic purposes...
  8. doi request reprint Altered expression of degranulation-related genes in CD8+ T cells in human T lymphotropic virus type I infection
    Tathiane M Malta
    National Institute of Science and Technology in Stem Cell and Cell Therapy, Center for Cell Therapy and Regional Blood Center, Blood Center of Ribeirão Preto, Ribeirao Preto, Sao Paulo, Brazil
    AIDS Res Hum Retroviruses 29:826-36. 2013
    ..These results should be further tested with biological functional assays to increase our understanding on the role of these molecules in the development of HTLV-1-related diseases...
  9. pmc The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome
    Francis M F Nunes
    Departamento de Genetica, Laboratório de Genética Molecular e Bioinformática, Faculdade de Medicina de Ribeirao Preto, Universidade de Sao Paulo, Av Bandeirantes 3900, 14040 900 Ribeirão Preto, SP, Brazil
    BMC Genomics 5:84. 2004
    ..Towards this end, we employed the Open Reading frame ESTs (ORESTES) strategy to generate profiles for the life cycle of Apis mellifera workers...