Mauro Delorenzi

Summary

Affiliation: The Walter and Eliza Hall Institute of Medical Research
Country: Australia

Publications

  1. ncbi request reprint An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
    Mauro Delorenzi
    Genetics and Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria 3050, Australia
    Bioinformatics 18:617-25. 2002
  2. ncbi request reprint A subset of Plasmodium falciparum SERA genes are expressed and appear to play an important role in the erythrocytic cycle
    Susanne K Miller
    Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria 3050, Australia
    J Biol Chem 277:47524-32. 2002
  3. ncbi request reprint Enzymic, phylogenetic, and structural characterization of the unusual papain-like protease domain of Plasmodium falciparum SERA5
    Anthony N Hodder
    The Walter and Eliza Hall Institute of Medical Research, Melbourne, 1G Royal Parade, Parkville, Victoria 3050, Australia
    J Biol Chem 278:48169-77. 2003
  4. pmc Genes for glycosylphosphatidylinositol toxin biosynthesis in Plasmodium falciparum
    Mauro Delorenzi
    The Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria 3050, Australia
    Infect Immun 70:4510-22. 2002
  5. pmc MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data
    Christoph D Schmid
    Swiss Institute of Bioinformatics SIB, Lausanne, Switzerland
    Nucleic Acids Res 35:W201-5. 2007
  6. doi request reprint MAMOT: hidden Markov modeling tool
    Frederic Schutz
    Swiss Institute of Bioinformatics and Bioinformatics Core Facility of the NCCR Molecular Oncology, CH 1015 Lausanne, Switzerland
    Bioinformatics 24:1399-400. 2008
  7. ncbi request reprint The serine repeat antigen (SERA) gene family phylogeny in Plasmodium: the impact of GC content and reconciliation of gene and species trees
    Richard Bourgon
    Department of Statistics, University of California, Berkeley, USA
    Mol Biol Evol 21:2161-71. 2004
  8. pmc HTPSELEX--a database of high-throughput SELEX libraries for transcription factor binding sites
    Vidhya Jagannathan
    Swiss Institute for Experimental Cancer Research and Swiss Institute of Bioinformatics, Ch des Boveresses 155, CH 1066 Epalinges, Switzerland
    Nucleic Acids Res 34:D90-4. 2006
  9. pmc Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
    Alexandre Kuhn
    Swiss Institute of Bioinformatics SIB, CH 1015 Lausanne, Switzerland
    BMC Bioinformatics 9:26. 2008
  10. pmc An atlas of human gene expression from massively parallel signature sequencing (MPSS)
    C Victor Jongeneel
    Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
    Genome Res 15:1007-14. 2005

Collaborators

Detail Information

Publications10

  1. ncbi request reprint An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
    Mauro Delorenzi
    Genetics and Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria 3050, Australia
    Bioinformatics 18:617-25. 2002
    ..The performance of the two approaches is tested for Coiled-Coil Domains (CCDs). The prediction of CCDs is used frequently, and its optimization seems worthwhile...
  2. ncbi request reprint A subset of Plasmodium falciparum SERA genes are expressed and appear to play an important role in the erythrocytic cycle
    Susanne K Miller
    Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria 3050, Australia
    J Biol Chem 277:47524-32. 2002
    ..The inability to disrupt SERA4, -5, and -6 is consistent with their apparent dominant expression and implies an important role for these genes in maintenance of the erythrocytic cycle...
  3. ncbi request reprint Enzymic, phylogenetic, and structural characterization of the unusual papain-like protease domain of Plasmodium falciparum SERA5
    Anthony N Hodder
    The Walter and Eliza Hall Institute of Medical Research, Melbourne, 1G Royal Parade, Parkville, Victoria 3050, Australia
    J Biol Chem 278:48169-77. 2003
    ..This study provides impetus for the examination of SERA5 as a target for antimalarial drug design...
  4. pmc Genes for glycosylphosphatidylinositol toxin biosynthesis in Plasmodium falciparum
    Mauro Delorenzi
    The Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria 3050, Australia
    Infect Immun 70:4510-22. 2002
    ..The biosynthetic pathway of the malaria parasite GPI offers potential targets for drug development and may be useful for studying parasite cell biology and the molecular basis for the pathophysiology of parasitic diseases...
  5. pmc MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data
    Christoph D Schmid
    Swiss Institute of Bioinformatics SIB, Lausanne, Switzerland
    Nucleic Acids Res 35:W201-5. 2007
    ..The program written in C++ can be freely downloaded from ftp://ftp.epd.unil.ch/pub/software/unix/madap. The MADAP web server can be accessed at http://www.isrec.isb-sib.ch/madap/...
  6. doi request reprint MAMOT: hidden Markov modeling tool
    Frederic Schutz
    Swiss Institute of Bioinformatics and Bioinformatics Core Facility of the NCCR Molecular Oncology, CH 1015 Lausanne, Switzerland
    Bioinformatics 24:1399-400. 2008
    ..A wealth of useful features include the use of pseudocounts, state tying and fixing of selected parameters in learning, and the inclusion of prior probabilities in decoding...
  7. ncbi request reprint The serine repeat antigen (SERA) gene family phylogeny in Plasmodium: the impact of GC content and reconciliation of gene and species trees
    Richard Bourgon
    Department of Statistics, University of California, Berkeley, USA
    Mol Biol Evol 21:2161-71. 2004
    ..Parsimony of reconciliation and a second criterion--implied mutational pattern at two key active sites in the SERA proteins-were also seen to be useful supplements to standard "bootstrap" analysis for inferred topologies...
  8. pmc HTPSELEX--a database of high-throughput SELEX libraries for transcription factor binding sites
    Vidhya Jagannathan
    Swiss Institute for Experimental Cancer Research and Swiss Institute of Bioinformatics, Ch des Boveresses 155, CH 1066 Epalinges, Switzerland
    Nucleic Acids Res 34:D90-4. 2006
    ..HTPSELEX is available from ftp://ftp.isrec.isb-sib.ch/pub/databases/htpselex/ and http://www.isrec.isb-sib.ch/htpselex...
  9. pmc Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
    Alexandre Kuhn
    Swiss Institute of Bioinformatics SIB, CH 1015 Lausanne, Switzerland
    BMC Bioinformatics 9:26. 2008
    ..e. flat file databases. This common flat database format thus provides a simple and robust solution to flexibly integrate various sources of information and a basis for the combined analysis of heterogeneous gene expression profiles...
  10. pmc An atlas of human gene expression from massively parallel signature sequencing (MPSS)
    C Victor Jongeneel
    Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
    Genome Res 15:1007-14. 2005
    ..The data are available on the Web at http://mpss.licr.org and http://sgb.lynxgen.com...