Yuan Yuan

Summary

Affiliation: La Trobe University
Country: Australia

Publications

  1. pmc Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series
    Yuan Yuan
    Key Laboratory for Computational Biology, CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, China
    BMC Bioinformatics 12:347. 2011
  2. pmc Widespread splicing changes in human brain development and aging
    Pavel Mazin
    Key laboratory of Computational Biology, CAS MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China
    Mol Syst Biol 9:633. 2013
  3. pmc Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques
    Xiling Liu
    Key laboratory of Computational Biology, CAS MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, 200031 Shanghai, China
    Genome Res 22:611-22. 2012
  4. pmc Accelerated aging-related transcriptome changes in the female prefrontal cortex
    Yuan Yuan
    Key Laboratory for Computational Biology, CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, China
    Aging Cell 11:894-901. 2012
  5. doi Robust alternative minimization for matrix completion
    Xiaoqiang Lu
    Center for Optical Imagery Analysis and Learning, State Key Laboratory of Transient Optics and Photonics, Xi an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi an, China
    IEEE Trans Syst Man Cybern B Cybern 42:939-49. 2012
  6. doi Differential Natural Selection of Human Zinc Transporter Genes between African and Non-African Populations
    Chao Zhang
    Chinese Academy of Sciences CAS Key Laboratory of Computational Biology, Max Planck Independent Research Group on Population Genomics, CAS MPG Partner Institute for Computational Biology PICB, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
    Sci Rep 5:9658. 2015
  7. doi Signature of positive selection of PTK6 gene in East Asian populations: a cross talk for Helicobacter pylori invasion and gastric cancer endemicity
    Pankaj Jha
    Chinese Academy of Sciences CAS Key Laboratory of Computational Biology, Max Planck Independent Research Group on Population Genomics, CAS MPG Partner Institute for Computational Biology PICB, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
    Mol Genet Genomics 290:1741-52. 2015
  8. pmc Analysis of genome-wide RNA-sequencing data suggests age of the CEPH/Utah (CEU) lymphoblastoid cell lines systematically biases gene expression profiles
    Yuan Yuan
    Chinese Academy of Sciences CAS Key Laboratory of Computational Biology, Max Planck Independent Research Group on Population Genomics, CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
    Sci Rep 5:7960. 2015
  9. doi Identification of well-differentiated gene expressions between Han Chinese and Japanese using genome-wide microarray data analysis
    Yuan Yuan
    Max Planck Independent Research Group on Population Genomics, Chinese Academy of Sciences and Max Planck Society CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    J Med Genet 50:534-42. 2013
  10. doi Biologically inspired features for scene classification in video surveillance
    Kaiqi Huang
    National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing 100080, China
    IEEE Trans Syst Man Cybern B Cybern 41:307-13. 2011

Collaborators

Detail Information

Publications11

  1. pmc Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series
    Yuan Yuan
    Key Laboratory for Computational Biology, CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, China
    BMC Bioinformatics 12:347. 2011
    ..While many powerful computation tools for time series alignment have been developed, they do not provide significance estimates for time shift measurements...
  2. pmc Widespread splicing changes in human brain development and aging
    Pavel Mazin
    Key laboratory of Computational Biology, CAS MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China
    Mol Syst Biol 9:633. 2013
    ..More than 60% of all splicing changes represented a single splicing pattern reflecting preferential inclusion of gene segments potentially targeting transcripts for nonsense-mediated decay in infants and elderly...
  3. pmc Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques
    Xiling Liu
    Key laboratory of Computational Biology, CAS MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, 200031 Shanghai, China
    Genome Res 22:611-22. 2012
    ..Evolutionarily, this change may have taken place after the split of the human and the Neanderthal lineages...
  4. pmc Accelerated aging-related transcriptome changes in the female prefrontal cortex
    Yuan Yuan
    Key Laboratory for Computational Biology, CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, China
    Aging Cell 11:894-901. 2012
    ..Accelerated aging-related changes in the female SFG transcriptome may provide a link between a higher stress exposure or sensitivity in women and the higher prevalence of AD...
  5. doi Robust alternative minimization for matrix completion
    Xiaoqiang Lu
    Center for Optical Imagery Analysis and Learning, State Key Laboratory of Transient Optics and Photonics, Xi an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi an, China
    IEEE Trans Syst Man Cybern B Cybern 42:939-49. 2012
    ..Moreover, the applications of the RAM algorithm to low-rank image recovery demonstrated that it achieves satisfactory performance...
  6. doi Differential Natural Selection of Human Zinc Transporter Genes between African and Non-African Populations
    Chao Zhang
    Chinese Academy of Sciences CAS Key Laboratory of Computational Biology, Max Planck Independent Research Group on Population Genomics, CAS MPG Partner Institute for Computational Biology PICB, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
    Sci Rep 5:9658. 2015
    ....
  7. doi Signature of positive selection of PTK6 gene in East Asian populations: a cross talk for Helicobacter pylori invasion and gastric cancer endemicity
    Pankaj Jha
    Chinese Academy of Sciences CAS Key Laboratory of Computational Biology, Max Planck Independent Research Group on Population Genomics, CAS MPG Partner Institute for Computational Biology PICB, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
    Mol Genet Genomics 290:1741-52. 2015
    ..pylori invasion in human 50,000 years ago. Establishment of cross talk between PTK6 and CagA by functional studies may further elucidate the underlying biology of H. pylori-mediated gastric cancer. ..
  8. pmc Analysis of genome-wide RNA-sequencing data suggests age of the CEPH/Utah (CEU) lymphoblastoid cell lines systematically biases gene expression profiles
    Yuan Yuan
    Chinese Academy of Sciences CAS Key Laboratory of Computational Biology, Max Planck Independent Research Group on Population Genomics, CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China
    Sci Rep 5:7960. 2015
    ..We suggested the results be carefully explained when CEU LCLs are used for transcriptomic data analysis in future studies. ..
  9. doi Identification of well-differentiated gene expressions between Han Chinese and Japanese using genome-wide microarray data analysis
    Yuan Yuan
    Max Planck Independent Research Group on Population Genomics, Chinese Academy of Sciences and Max Planck Society CAS MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
    J Med Genet 50:534-42. 2013
    ..Several previous studies have examined and compared variations in gene expression between continental populations. However, differences in gene expression variation between closely related populations have not been studied yet...
  10. doi Biologically inspired features for scene classification in video surveillance
    Kaiqi Huang
    National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing 100080, China
    IEEE Trans Syst Man Cybern B Cybern 41:307-13. 2011
    ..Furthermore, occlusion and disorder problems in scene classification in video surveillance are also first studied in this paper...
  11. doi L1-norm-based 2DPCA
    Xuelong Li
    State Key Laboratory of Transient Optics and Photonics, Xi an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi an, China
    IEEE Trans Syst Man Cybern B Cybern 40:1170-5. 2010
    ..Traditional L2-norm-based least squares criterion is sensitive to outliers, while the newly proposed L1-norm 2DPCA is robust. Experimental results demonstrate its advantages...